BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07760.1
Length=2562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925145 jgi|Araly1|925145|scaffold_200706.1 1413 0.0
Ahg892706 jgi|Araly1|892706|Al_scaffold_0006_702 966 0.0
Ahg892707 jgi|Araly1|892707|Al_scaffold_0006_703 939 0.0
> Ahg925145 jgi|Araly1|925145|scaffold_200706.1
Length=2323
Score = 1413 bits (765), Expect = 0.0
Identities = 1144/1321 (87%), Gaps = 50/1321 (4%)
Strand=Plus/Plus
Query 1267 AAT-ACATTGAAGGACTTCATTTCCATTGCTGAGACTGAAGTGAAAACCGTATTGAGTCT 1325
||| ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 1004 AATGACATTGAAGGACTTCATTTCCATTGCTGAGACTCAAGTGGCAACTGTATTGAGTCT 1063
Query 1326 TTACTCTGTCGTGGGAAAAAATGCTGTTGCACTTGTCAACTATTTTGGCGAGGATCCTAA 1385
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1064 TTACTCTGTCGTGGGAAAAAATGCTGCTGCACTTGCCATCTATTTTGGCGAGGATCCTAA 1123
Query 1386 ATGGTGTCCATTTGAACAAGTTACTGCGACCCTCCTTCACTTTATAAGGTTGTTTGAGAA 1445
| ||||||||||||||||||||| ||||||| || |||||||||| |||||| ||||
Sbjct 1124 CCGTTGTCCATTTGAACAAGTTACTAAGACCCTCTTTGACTTTATAAGATTGTTTAAGAA 1183
Query 1446 AGCACACGAAGAGAATGTCAAGAAAGCTGACTTGGAGAAGAAGAAAGCCGCTAACGAAAC 1505
|||||| ||||||||||||| | |||| ||||||||||||| |||||||||||| |||||
Sbjct 1184 AGCACATGAAGAGAATGTCAGGCAAGCGGACTTGGAGAAGAGGAAAGCCGCTAAGGAAAC 1243
Query 1506 GGAAATGAAGCATGTGGTTCATAA-TAGCTGGCTC-AACAACTTAAATATTAGAGCATCC 1563
| ||||||||||||| | | || || | ||| |||| ||| | | | |||
Sbjct 1244 GAAAATGAAGCATGT-G---A-AAGGAG-TCACTCTCACAA--GAAA-AGTGGTTCAT-A 1293
Query 1564 ACA--TTGATCGACCAGAGGAGAGCCTTTAACACTATG--ATTATGCTTCAGAAAGTAGA 1619
| | |||||||||| ||||||||||||||||| || | |||||||||| ||||||| |
Sbjct 1294 ATAGCTTGATCGACCTGAGGAGAGCCTTTAACA-TA-GAAATTATGCTTCGGAAAGTAAA 1351
Query 1620 GATGCCGCTGCCTGATATGATGGCTGCAGTTCTAGGAATGGATGAGTCTGTACTAGATGT 1679
|||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |
Sbjct 1352 GATGCCGCTGCCTGATATAATGGCTGCACTTCTAGCAATGGATGAGTCTGTACTAGATAT 1411
Query 1680 TGATCAAATAGAGAATCTTATAAGGTTTTGCCCAACAAAGGAGGAGATGAAGCTTCTTAA 1739
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 1412 TGATCAAATAGAGAATCTTATAAGGTTTTGCCCAACAAAGGTGGAGATGGAGCTTCTTGA 1471
Query 1740 GAACTATACTGGTGACAAGGCAACCTTGGGAAAGTGTGAGCAGTACTTCCTAGAGCTAAT 1799
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1472 GAGCTATACTGGTGACAAGGCAACCTTGGGAAAGTGTGACCAGTACTTCCTAGAGCTTAT 1531
Query 1800 GAAGGTTCCAGGAGTAGAATCGAAGCTGAGAGTGTTTTCCTTCAAGATTCATTTCGGTAC 1859
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1532 GAAGGTTCCAGGAGTAGAATCGAAGCTGAGAGTGTTTTCCTTCAAGATTCAATTCGGCAC 1591
Query 1860 TCAGATAAAAGAACTTAATAAAGGTTTAAATACCGTAAATTCTGCATGTGAGGAGATACG 1919
| |||| | |||||| ||||||||||||||| | ||||||||||||||| ||||| | ||
Sbjct 1592 TAAGATCACAGAACTCAATAAAGGTTTAAATGCGGTAAATTCTGCATGTAAGGAGGTCCG 1651
Query 1920 TACTTCAC-AAAAGCTAAAAGAGATTATGAAAATTATTCTCTGCCTGGGGAACATATTGA 1978
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1652 TACTTC-CGAAAAGCTAAAAGAGATTATGAAAATTATTCTCTGCTTGGGGAACATAATGA 1710
Query 1979 ACCAAGGAACTGCCAGGGGCAGTGCAGTGGGATTCAAGTTGGACAGTTTATTGAAT-TTA 2037
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1711 ACCAAGGAACTGCCAAGGGCAGTGCAGTGGGATTCAAGTTGGACAGTTTATTG-ATATTA 1769
Query 2038 AGCGAAAAATGTTCTGCTAACACCAACATGACTCTCATGCATTATCTTTGCAAGGTCCTT 2097
||||| | | || ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1770 AGCGACACACGTGCTGCTAACAGCGAGATGACTCTCATGCATTATCTTTGCAAGGTCCTT 1829
Query 2098 GCTTCCAAGGCATCAGATCTACTGGACTTCCATAAGGATCTTGAAAATCTCGAATCAGCT 2157
||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||
Sbjct 1830 GCTTCCAAGGCATCAGATCTACTAGATTTCCATAAGGATCTTGAAAGTCTTGAATCAGCT 1889
Query 2158 TCAAAGATACATTTGAAGTCGTTGGCTGAGGAAATGGTAGCTATAACCAAAGGACTCCAA 2217
||||||||||| ||||||| ||| || |||||||| |||||||||||||||||| | ||
Sbjct 1890 TCAAAGATACACTTGAAGTTGTTAGCCGAGGAAATTGTAGCTATAACCAAAGGATTGGAA 1949
Query 2218 AAACTGAACCAGGAGCTTACCGCATCCGAAAGTGACGGTCCTATTTCTGAAGTTTTCCGT 2277
||||| ||||| ||||| || ||| |||||||||| ||||| ||||| |||||||||||
Sbjct 1950 AAACTTAACCATGAGCTCACTGCAACCGAAAGTGATGGTCCCGTTTCTCAAGTTTTCCGT 2009
Query 2278 AAATTATTGA-AGGACTTCATA-TCCGTTGCTGAAACTCAAGTAGCAACTGTATCGAGTC 2335
|| ||||||| || |||||||| | | ||||| |||||||||||||| ||||||||||
Sbjct 2010 AATTTATTGAGAG-ACTTCATAATTA-TGGCTGAGACTCAAGTAGCAACGGTATCGAGTC 2067
Query 2336 TTTACTCCTCAGTGGGAGGAAACACTGATGCACTTGTACACTATTTTGGCGAG-GATCCG 2394
|||||||| | |||||| |||| |||||||||||| ||||||||||| |||| | |||
Sbjct 2068 TTTACTCCACCGTGGGAAGAAATGCTGATGCACTTGCACACTATTTTGACGAGAG-TCCT 2126
Query 2395 AACGATTATCCATTTGAACAAG---CAGC-ACAC-CAAGAGAATGTCAAACAAGCGGAGT 2449
||| |||||||||||||| ||| | || |||| | ||| | | | | | | | ||
Sbjct 2127 AACCATTATCCATTTGAAAAAGTTGCCGCGACACTCTTGAGTTT-T-ATA-A-G-GTTGT 2181
Query 2450 TGGAGAA-G-A-A-GAA-AGC-TG-CAAAGGAAGCAGAAATGGAGAAGACGAA-GAAACG 2501
| |||| | | | ||| || || ||| | |||| || ||||||||| ||| ||| ||
Sbjct 2182 TTAAGAAAGCACACGAAGAGAATGTCAA-GCAAGCGGAGTTGGAGAAGAAGAAAGAA-CG 2239
Query 2502 AGTCAGTCTCACTAATAAAAAAGCAAGCGGAGTTGGAGAAGAAGAAAGTTGCCTTATATA 2561
||||||||| |||| ||||||| | ||||||||| |||||||||||| |||||||||||
Sbjct 2240 AGTCAGTCTTGCTAA-AAAAAAGGATGCGGAGTTGAAGAAGAAGAAAGCTGCCTTATATA 2298
Query 2562 A 2562
|
Sbjct 2299 A 2299
Score = 697 bits (377), Expect = 0.0
Identities = 511/572 (89%), Gaps = 24/572 (4%)
Strand=Plus/Plus
Query 378 TCCATCTAAAAAGAAGTCCTCCCTGAAGCGATTTA-ACTGGGTTAAAATAACAAGGGCTT 436
|||| ||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||
Sbjct 275 TCCAGCTAAAAAAAAGTCCTCCCTGAAGCG-CTTACACTGGGTTAAAATAACAAAGGCTT 333
Query 437 TGCCGGGGAGCTTATGGGATGAGTTACAGATACAACAAGTATGCCACGGCGATATCGAGG 496
|||||||||||||||||||||||||||||| || ||||| ||||| | |||||||||||
Sbjct 334 TGCCGGGGAGCTTATGGGATGAGTTACAGAGACGACAAGCATGCC--G-CGATATCGAGG 390
Query 497 ATGAACAGATTCTCTGTGCAATAGAACTTGATGTATCAGAAATAGAGA-CCTTTTTCTCT 555
||||| ||||| |||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 391 ATGAAAAGATTTTCTGTGCAGCAGAACTTGATGTATCAGAAATAGAGAACCTTTT-CTCT 449
Query 556 CTTGGGGCAG--C-AAAACCTGAAAAAGATCCACTGATTGAC--C-TTAGGAGAGC-CAC 608
||||||||| | ||||||| |||||| ||||||||||||| | || ||||||| |||
Sbjct 450 CTTGGGGCAAAACCAAAACCTAAAAAAGTTCCACTGATTGACAACCTTTGGAGAGCTCAC 509
Query 609 TGACACGGAACTTACGCTAATGTTATTAAATATTCGGCTGCCTGCAGATATGATGGCTGC 668
||||||||| ||| ||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 510 -GACACGGAAATTAGGCTAATGTTATTAAATATTCGGCTGCCTG-A--TCTGATGGCTGC 565
Query 669 AATCATGGCAATGGATGAGTCTGTGCTAGATGATGATGAAATAAGGGGTCTTATAAACCT 728
|||||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||
Sbjct 566 AATCATGGCAATGGATGAGTCTGTACTAGACGTTGATGAAATAAGGAATCTTATAAACCT 625
Query 729 TTTCCCAACCAAGGAGAATATGGAGCTTCTTATGAGCTACACTGGTGGCAAGTGGACCTT 788
|||||||||||||||| ||||||||||||||| || ||||||||||| |||| ||||| |
Sbjct 626 TTTCCCAACCAAGGAGGATATGGAGCTTCTTAAGACCTACACTGGTGACAAGGGGACCGT 685
Query 789 G-GAAAAGTGGGAGCAGTACTTCCAAGAGCTAAGGAAGGTGCTACGAGTAGAATCAAAGC 847
| |||| | |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 686 GAGAAA-GAGGGAGCAGTACTTCCAAGAGCTAATGAAGGTGCCACGAGTAGAATCAAAGC 744
Query 848 TGAGAGTATTTTACTTCAAGATTCAATTTAGC-ACTAAGATAACACAATTCaaaaaaaGG 906
|||||||||||| |||||||||||||||| || |||||||||||| |||| |||||||||
Sbjct 745 TGAGAGTATTTTCCTTCAAGATTCAATTT-GCCACTAAGATAACAGAATTAAAAAAAAGG 803
Query 907 TTAAATGTGGTCA-ATTCTGCGTGTGAGGAGG 937
|||| |||||| | ||||||| ||||||||||
Sbjct 804 TTAAGTGTGGT-AGATTCTGCTTGTGAGGAGG 834
Score = 102 bits (55), Expect = 1e-20
Identities = 77/87 (89%), Gaps = 3/87 (3%)
Strand=Plus/Plus
Query 1 ATGTCCCCTGTCGAGATCTCTGGCGCTGATGCCGTGGTGTCGCCTCCTATGCGTGGAAGA 60
||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 21 ATGTCGCTTGTCGAGATCTCTGGCGCTGATGCCGTGGTGGCGCCT---ATGCGTGGAAGA 77
Query 61 GTTCCACTTCCACCACCGcctcctcct 87
|| |||| |||||||| |||||||||
Sbjct 78 GTACCACCACCACCACCACCTCCTCCT 104
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 2522 AAGCAAGCGGAGTTGGAGAAGAAGAAAG 2549
||||||||||||||||||||||||||||
Sbjct 2208 AAGCAAGCGGAGTTGGAGAAGAAGAAAG 2235
> Ahg892706 jgi|Araly1|892706|Al_scaffold_0006_702
Length=4680
Score = 966 bits (523), Expect = 0.0
Identities = 742/847 (88%), Gaps = 18/847 (2%)
Strand=Plus/Plus
Query 1579 AGGAGAGCCTTTAACAC-TATGATTATGCTTCA-GAAAGTAGAGATGCCGCTGCCTGATA 1636
||||||||| |||||| | || |||||| | |||||| ||||||||||||||||||
Sbjct 3685 AGGAGAGCCAATAACACGGA-AATAATGCTT-ACTAAAGTAAAGATGCCGCTGCCTGATA 3742
Query 1637 TGATGGCTGCAGTTCTAGG-AATGGATGAGTCTGTACTAGATGTTGATCAAATAGAGAAT 1695
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 3743 TGATGGCTGCAGTTCT-GGCAATGGATGAGTCTGTACTAGATGTTGATCAAATAGAGAAT 3801
Query 1696 CTTATAAGGTTTTGCCCAACAAAGGAGGAGATGAAGCTTCTTAAGAACTATACTGGTGAC 1755
||||||| ||||| ||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 3802 CTTATAAAATTTTGTCCAACCAAGGAGGAGATGGAGCTTCTTAAGAACTACACTGGTGAC 3861
Query 1756 AAGGCAACCTTGGGAAAGTGTGAGCAGTACTTCCTAGAGCTAATGAAGGTTCCAGGAGTA 1815
||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 3862 AAGGCGACCTTGGGAAAGTGTGAGCAGTACTTCCTAGAGGTAATGAAGGTGCCACGAGTG 3921
Query 1816 GAATCGAAGCTGAGAGTGTTTTCCTTCAAGATTCATTTCGGTACTCAGATAAAAGAACTT 1875
|| | ||||| ||||| ||||| ||||| ||||| ||||| |||||||||| |||| ||
Sbjct 3922 GAGGCAAAGCTTAGAGTATTTTCTTTCAAAATTCAATTCGGCACTCAGATAACAGAA-TT 3980
Query 1876 -AATAAAGGTTTAAATACCGTAAATTCTGCATGTGAGGAGATACGTACTTCACAAAAGCT 1934
|| ||| |||||||| | ||||||||||||||||||||| | |||| ||||||||||||
Sbjct 3981 CAAAAAAAGTTTAAATGCAGTAAATTCTGCATGTGAGGAGGTCCGTAATTCACAAAAGCT 4040
Query 1935 AAAAGAGATTATGAAAATTATTCTCTGCCTGGGGAACATATTGAACCAAGGAACTGCCAG 1994
|||||| |||||||||| ||||| | ||||||||||| |||||||||||||||||| ||
Sbjct 4041 AAAAGAAATTATGAAAAAGATTCTTTACCTGGGGAACACATTGAACCAAGGAACTGCAAG 4100
Query 1995 GGGCAG-TGCAGTGGGATTCAAGTTGGACAGTTTATTGAATTTAAGCGAAAAATGTTCTG 2053
|||| | ||| || |||||||||||||||||||||||||| ||||| || | | || |||
Sbjct 4101 GGGC-GCTGCTGTTGGATTCAAGTTGGACAGTTTATTGAAATTAAGTGATACACGTGCTG 4159
Query 2054 CTAACACCAACATGACTCTCATGCATTATCTTTGCAAGGTCCTTGCTTCCAAGGCATCAG 2113
|||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 4160 CTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAGGTCCTTGCTTCAAAGGCATCAG 4219
Query 2114 ATCTACTGGACTTCCATAAGGATCTTGAAAATCTCGAATCAGCTTCAAAGATACATTTGA 2173
|||||||||||||| ||||||||||||| ||| |||||||| || |||||||| ||||
Sbjct 4220 TTCTACTGGACTTCCCCAAGGATCTTGAAAGTCTTGAATCAGCCTCGAAGATACAATTGA 4279
Query 2174 AGTCGT-TGGCTGAGGAAATGGTAGCTATAACCAAAGGACTCCAAAAACTGAACCAGGAG 2232
|||| | |||||||||||||| |||||||| ||||||| | ||||||||||||||||
Sbjct 4280 AGTC-TCTGGCTGAGGAAATGCAAGCTATAATCAAAGGATTGGAAAAACTGAACCAGGAA 4338
Query 2233 CTTACCGCATCCGAAAGTGACGGTCCTATTTCTGAAGTTTTCCGTAAATTATTGAAGGAC 2292
|| || ||||| |||||||| |||||| |||||||||||||||||||| |||| ||||
Sbjct 4339 CTCACTGCATCTGAAAGTGATGGTCCTGTTTCTGAAGTTTTCCGTAAAACATTGGGGGAC 4398
Query 2293 TTCATATCCGTTGCTGAAACTCAAGTAGCAACTGTATCGAGTCTTTACTCC-TCAGTGGG 2351
||||||||| ||||||| ||| |||| |||||||||||||||||||||||| || |||||
Sbjct 4399 TTCATATCCATTGCTGAGACTGAAGTGGCAACTGTATCGAGTCTTTACTCCGTC-GTGGG 4457
Query 2352 -AGGAAACACTGATGCACTTGTACACTATTTTGGCGAGGATCCGAAC-GATTATCCATTT 2409
|| ||| |||||||||||| |||||||||||||||||||| ||| | || |||||||
Sbjct 4458 TAG-AAATGCTGATGCACTTGCGCACTATTTTGGCGAGGATCCTAACCG-TTGTCCATTT 4515
Query 2410 GAACAAG 2416
|||||||
Sbjct 4516 GAACAAG 4522
Score = 496 bits (268), Expect = 5e-139
Identities = 396/457 (87%), Gaps = 12/457 (3%)
Strand=Plus/Plus
Query 1062 CATGCATAATTTTTGCAAGGTCCTTGCTTCGGAGGCATCAGATCTTCTGGACGTCCATAA 1121
||||||| || ||||||||||||||||||| ||||||||| ||| |||||| ||| ||
Sbjct 4179 CATGCATTATCTTTGCAAGGTCCTTGCTTCAAAGGCATCAGTTCTACTGGACTTCCCCAA 4238
Query 1122 GGATCTTCAAAGTCTTGAATCAGCTTCAAAGAAACAATTGAAGTCTCTGGCTGAGGAAAT 1181
||||||| |||||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 4239 GGATCTTGAAAGTCTTGAATCAGCCTCGAAGATACAATTGAAGTCTCTGGCTGAGGAAAT 4298
Query 1182 GCAAGATATAATCAGAG-ATTTGGAAAAACTGAACCAGGAGCTTACTGCAGCCGAAACTG 1240
||||| |||||||| || ||| |||||||||||||||||| || |||||| | |||| ||
Sbjct 4299 GCAAGCTATAATCAAAGGATT-GGAAAAACTGAACCAGGAACTCACTGCATCTGAAAGTG 4357
Query 1241 ATGGTCCTGATTCTCAAGTATTTC-GTAATACATTGAAGGACTTCATTTCCATTGCTGAG 1299
||||||||| |||| |||| |||| |||| |||||| ||||||||| ||||||||||||
Sbjct 4358 ATGGTCCTGTTTCTGAAGT-TTTCCGTAAAACATTGGGGGACTTCATATCCATTGCTGAG 4416
Query 1300 ACTGAAGTGAAAACCGTATTGAGTCTTTACTCTGTCGTGGGAAAAAATGCTGTTGCACTT 1359
||||||||| ||| |||| |||||||||||| |||||||| | |||||||| |||||||
Sbjct 4417 ACTGAAGTGGCAACTGTATCGAGTCTTTACTCCGTCGTGGGTAGAAATGCTGATGCACTT 4476
Query 1360 GT-CAACTATTTTGGCGAGGATCCTAAATGGTGTCCATTTGAACAAGTTACTGCGACCCT 1418
| || ||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 4477 GCGCA-CTATTTTGGCGAGGATCCTAACCGTTGTCCATTTGAACAAGTTACTGCAACCCT 4535
Query 1419 CCTTCACTTT-ATAAGGTTGTTTGAGAAAGCACACGAAGAGAATGTCAAGAAAGCTGA-C 1476
| || | ||| |||||||||||| ||||||||||||||||||| || ||| |||| || |
Sbjct 4536 C-TTGAATTTTATAAGGTTGTTTAAGAAAGCACACGAAGAGAACGTGAAGCAAGCAGAGC 4594
Query 1477 TTGGAGAAGAAGAAAGCCGCT-AACGAAACGGAAATG 1512
| ||||||||||||||| || || ||| ||||||||
Sbjct 4595 T-GGAGAAGAAGAAAGCT-CTTAAGGAAGCGGAAATG 4629
Score = 470 bits (254), Expect = 3e-131
Identities = 418/495 (84%), Gaps = 19/495 (4%)
Strand=Plus/Plus
Query 565 GCAAAACCTGAAAAAGATCCACTGATTGACCTTAGGAGAGCCACTGACACGGAACTTACG 624
|||||||||||||||| || ||||||||| ||||||||||||| | |||||||| | | |
Sbjct 3652 GCAAAACCTGAAAAAGTTCAACTGATTGATCTTAGGAGAGCCAATAACACGGAAATAATG 3711
Query 625 C-TAATGTTATTAAATATTCGGCTGCCTGCAGATATGATGGCTGCA-ATCATGGCAATGG 682
| || | | |||| || | ||||||| ||||||||||||||| || |||||||||
Sbjct 3712 CTTACT-AAAGTAAAGATGCCGCTGCCT---GATATGATGGCTGCAGTTC-TGGCAATGG 3766
Query 683 ATGAGTCTGTGCTAGATGATGATGAAATAAG-GGGTCTTATAAACCTTTT-CCCAACCAA 740
|||||||||| ||||||| |||| |||| || | ||||||||| |||| ||||||||
Sbjct 3767 ATGAGTCTGTACTAGATGTTGATCAAAT-AGAGAATCTTATAAA-ATTTTGTCCAACCAA 3824
Query 741 GGAGAATATGGAGCTTCTTATGAGCTACACTGGTGGCAAGTG-GACCTTGGAAAAGTGGG 799
|||| | ||||||||||||| || ||||||||||| |||| | |||||||| |||||| |
Sbjct 3825 GGAGGAGATGGAGCTTCTTAAGAACTACACTGGTGACAAG-GCGACCTTGGGAAAGTGTG 3883
Query 800 AGCAGTACTTCCAAGAGCTAAGGAAGGTGCTACGAGTAGAATCAAAGCTGAGAGTATTTT 859
|||||||||||| |||| ||| |||||||| |||||| || ||||||| ||||||||||
Sbjct 3884 AGCAGTACTTCCTAGAGGTAATGAAGGTGCCACGAGTGGAGGCAAAGCTTAGAGTATTTT 3943
Query 860 AC-TTCAAGATTCAATTTAGCACTAAGATAACACAATTCaaaaaaaGGTTAAATGTGGTC 918
| ||||| |||||||| ||||| |||||||| ||||||||||||| ||||||| ||
Sbjct 3944 -CTTTCAAAATTCAATTCGGCACTCAGATAACAGAATTCAAAAAAAGTTTAAATGCAGTA 4002
Query 919 AATTCTGCGTGTGAGGAGGTCTGTTCTTCACAAAAGCTAAAAGAAATTATGAAAAAGATT 978
|||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 4003 AATTCTGCATGTGAGGAGGTCCGTAATTCACAAAAGCTAAAAGAAATTATGAAAAAGATT 4062
Query 979 ACTTG-CCTGGGGAACACATCGAACCAAGGAACTGGCA-GGGGCGTTACAGTGGGATTCA 1036
||| |||||||||||||| |||||||||||||| || |||||| | | || |||||||
Sbjct 4063 -CTTTACCTGGGGAACACATTGAACCAAGGAACTG-CAAGGGGCGCTGCTGTTGGATTCA 4120
Query 1037 ACTTGGACAGTTTAT 1051
| |||||||||||||
Sbjct 4121 AGTTGGACAGTTTAT 4135
> Ahg892707 jgi|Araly1|892707|Al_scaffold_0006_703
Length=1824
Score = 939 bits (508), Expect = 0.0
Identities = 700/790 (89%), Gaps = 23/790 (3%)
Strand=Plus/Plus
Query 1640 TGGCTGCAGTTCTAGGAAT-G--GATGAGTCTGTACTAGATGTTGATCAAATAGAGAATC 1696
||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 926 TGGCTGCAGTTCTTGCAATGGATGATGAGTCTGTACTAGATGTTGATCAAATAGAGAATC 985
Query 1697 TTATAAGG-TTTTGCCCAACAAAGGAGGAGAT-GAAGCTTCTTAAGAACTATACTGGTGA 1754
|||||| |||| |||||| |||||||| || || ||||||||||| ||| |||| |||
Sbjct 986 TTATAAACCTTTT-CCCAACCAAGGAGGATATAGA-GCTTCTTAAGACCTACACTGATGA 1043
Query 1755 CAAGGCAACCTTGGGAAAGTGTGAGCAGTACTTCCTAGAGCTAATGAAGGTTCCAGGAGT 1814
||||| |||||||||||||| ||||||||| ||| |||||||| |||||| ||| || |
Sbjct 1044 CAAGGGGACCTTGGGAAAGTGGGAGCAGTACGTCCAAGAGCTAACGAAGGTGCCACGACT 1103
Query 1815 AGAATCGAAGCTGAGAGTGTTTTCCTTCAAGATTCA-TTTCGGTACTCAGATAAAAGAAC 1873
|||||| ||||||||||| ||||||||||||||||| ||| | |||||||||| |||||
Sbjct 1104 AGAATCAAAGCTGAGAGTATTTTCCTTCAAGATTCAATTT-GCCACTCAGATAACAGAAC 1162
Query 1874 TTAATAAAGGTTTAAATACCG-TAAATTCTGCATGTGAGGAGATACGTACTTCACAAAAG 1932
| || |||| ||||||| | | |||||||||||||||||||| | ||||||||| |||||
Sbjct 1163 TCAAAAAAGTTTTAAATGC-GATAAATTCTGCATGTGAGGAGGTTCGTACTTCAGAAAAG 1221
Query 1933 CTAAAAGAGATTATGAAAATTATTCTCTGCCTGGGGAACATATTGAACCAAGGAACTGCC 1992
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1222 CTAAAAGAGATTATGAAAACTATTCTCTGCCTGGGGAACATATTGAACCAAGGAACTGCG 1281
Query 1993 AGGGGCAGTGCAGTGGGATTCAAGTTGGACAGTTTATTGAATTTAAGCGAAAAATGTTCT 2052
| ||| ||||| ||||||||||||||||||||||||||||| |||||||| | | || ||
Sbjct 1282 AAGGGAAGTGCCGTGGGATTCAAGTTGGACAGTTTATTGAAATTAAGCGACACACGTGCT 1341
Query 2053 GCTAACACCAACATGACTCTCATGCATTATCTTTGCAAG--G-TCCTTGCTTCCAAGGCA 2109
|||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1342 TCTAACAGCAACATGACTCTCATGCATTATCTTTGCAAGCAGGTCCTTGCTTCCAAGGCA 1401
Query 2110 TCAGATCTACTGGACTTCCATAAGGATCTTGAAAATCTCGAATCAGCTTCAAAGATACAT 2169
||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1402 TCAGATCTACTAGACTTCCATAAGGATCTTGAAAGTCTTGAATCAGCTTCAAAGATACAA 1461
Query 2170 TTGAAGTCGT-TGGCTGAGGAAATGGTAGCTATAACCAAAGGACTCCAAAAACTGAACCA 2228
||||||| | ||||||||||||| |||||||| ||||||| | |||||||||||||
Sbjct 1462 ATGAAGTC-TCTGGCTGAGGAAATACAAGCTATAATCAAAGGATTGGAAAAACTGAACCA 1520
Query 2229 GGAGCTTACCGCATCCGAAAGTGACGGTCCTATTTCTGAAGTTTTCCGTAAATTATTGAA 2288
|||||| || |||||||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct 1521 GGAGCTCACTGCATCCGAAAGTGATGGTCCTGTTTCTCAAGTTTTCCGTAAATTATTGAA 1580
Query 2289 GGACTTCATA-TCCGTTGCTGAAACTCAAGTAGCAACTGTATCGAGTCTTTACTCC-TCA 2346
|||||||||| || ||||||| |||||||||| ||||||||||| |||||||||| ||
Sbjct 1581 GGACTTCATAATCA-TTGCTGAGACTCAAGTAGAAACTGTATCGATTCTTTACTCCGTC- 1638
Query 2347 GTGGGAGGAAACACTGATGCACTTGTACACTATTTTGGCGAGGATCCGAA-CGATTATCC 2405
|||||| ||||| |||||||||||| ||||||||||||||||||||| || | |||||||
Sbjct 1639 GTGGGAAGAAACGCTGATGCACTTGCACACTATTTTGGCGAGGATCCTAAAC-ATTATCC 1697
Query 2406 ATTTGAACAA 2415
|||||| |||
Sbjct 1698 ATTTGA-CAA 1706
Score = 401 bits (217), Expect = 1e-110
Identities = 342/400 (86%), Gaps = 17/400 (4%)
Strand=Plus/Plus
Query 662 TGGCTGCA-ATCATGGCAAT-G--GATGAGTCTGTGCTAGATGATGATGAAATAAG-GGG 716
|||||||| || | ||||| | ||||||||||| ||||||| |||| |||| || |
Sbjct 926 TGGCTGCAGTTC-TTGCAATGGATGATGAGTCTGTACTAGATGTTGATCAAAT-AGAGAA 983
Query 717 TCTTATAAACCTTTTCCCAACCAAGGAGAATATGGAGCTTCTTATGAGCTACACTGGTGG 776
|||||||||||||||||||||||||||| |||| |||||||||| || |||||||| ||
Sbjct 984 TCTTATAAACCTTTTCCCAACCAAGGAGGATATAGAGCTTCTTAAGACCTACACTGATGA 1043
Query 777 CAAGTGGACCTTGGAAAAGTGGGAGCAGTACTTCCAAGAGCTAAGGAAGGTGCTACGAGT 836
|||| ||||||||| |||||||||||||||| |||||||||||| |||||||| |||| |
Sbjct 1044 CAAGGGGACCTTGGGAAAGTGGGAGCAGTACGTCCAAGAGCTAACGAAGGTGCCACGACT 1103
Query 837 AGAATCAAAGCTGAGAGTATTTTACTTCAAGATTCAATTTAGC-ACTAAGATAACACAAT 895
||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| ||
Sbjct 1104 AGAATCAAAGCTGAGAGTATTTTCCTTCAAGATTCAATTT-GCCACTCAGATAACAGAAC 1162
Query 896 TCaaaaaaaGGTT-AAATGTGGTCAATTCTGCGTGTGAGGAGGT-CTGTTCTTCACAAAA 953
|||||||| | || ||||| | | |||||||| ||||||||||| | || ||||| ||||
Sbjct 1163 TCAAAAAA-GTTTTAAATGCGATAAATTCTGCATGTGAGGAGGTTC-GTACTTCAGAAAA 1220
Query 954 GCTAAAAGAAATTATGAAAAAGATTACT-TGCCTGGGGAACACATCGAACCAAGGAACTG 1012
||||||||| |||||||||| ||| || ||||||||||||| || ||||||||||||||
Sbjct 1221 GCTAAAAGAGATTATGAAAACTATT-CTCTGCCTGGGGAACATATTGAACCAAGGAACTG 1279
Query 1013 -GCAGGGGCGTTACAGTGGGATTCAACTTGGACAGTTTAT 1051
| |||| || | ||||||||||| |||||||||||||
Sbjct 1280 CGAAGGGAAGTGCC-GTGGGATTCAAGTTGGACAGTTTAT 1318
Score = 220 bits (119), Expect = 3e-56
Identities = 183/212 (86%), Gaps = 12/212 (6%)
Strand=Plus/Plus
Query 383 CTAAA-AAGAAGTCCTCCCTGAAGCGATTTA-ACTGGGTTAAAATAACAAGGGCTTTGCC 440
||||| || |||||||||||||||||| ||| ||||||| ||| | |||||| ||||||
Sbjct 722 CTAAACAA-AAGTCCTCCCTGAAGCGA-TTACACTGGGTCAAACTGGCAAGGGTTTTGCC 779
Query 441 GGGGAGC-TTATGGGATGAGTTACAGATACAACAAGTATGCCACGGCGATATCGAGGATG 499
||||||| || |||||||||||||||| || ||||| ||| | | || ||||| | ||||
Sbjct 780 GGGGAGCGTT-TGGGATGAGTTACAGAGACGACAAGAATG-C-C-GCAATATCAAAGATG 835
Query 500 AACAGATTCTCTGTGCAATAGAACTTGATGTATCAGAAATAGAGACCTTTTTCTCTCTTG 559
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 836 AACAGATTCTCTGTGCAATAGAACTTGATGTATCAGAAATAAAGACCCTTTTCTCTCTTG 895
Query 560 GGGC-AG-C-AAAACCTGAAAAAGATCCACTG 588
||| | | ||||||||||||| | ||||||
Sbjct 896 TGGCTAAACCAAAACCTGAAAAAAAGCCACTG 927
Score = 89.8 bits (48), Expect = 9e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 2418 AGCACACCAAGAGAATGTCAAACAAGCGGAGTTGGAGAAGAAGAAAGCTGCAAAGGA 2474
||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1749 AGCACACGAAGAGAATATCAAGCAAGCGGAGTTGGAGAAGAAGAAAGCTGCAAAGGA 1805
Score = 54.7 bits (29), Expect = 3e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 2522 AAGCAAGCGGAGTTGGAGAAGAAGAAAGTTGC 2553
|||||||||||||||||||||||||||| |||
Sbjct 1768 AAGCAAGCGGAGTTGGAGAAGAAGAAAGCTGC 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96596861320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5