BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07770.1
Length=2658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892706 jgi|Araly1|892706|Al_scaffold_0006_702 1123 0.0
Ahg892707 jgi|Araly1|892707|Al_scaffold_0006_703 1072 0.0
Ahg925145 jgi|Araly1|925145|scaffold_200706.1 1048 0.0
> Ahg892706 jgi|Araly1|892706|Al_scaffold_0006_702
Length=4680
Score = 1123 bits (608), Expect = 0.0
Identities = 856/973 (88%), Gaps = 28/973 (3%)
Strand=Plus/Plus
Query 905 CAAAACCTGAAAAAGTTCCACTGATTGACCTTAAGAGAGCCAATAACAC-GATAGTTAA- 962
|||||||||||||||||| ||||||||| |||| ||||||||||||||| || | |||
Sbjct 3653 CAAAACCTGAAAAAGTTCAACTGATTGATCTTAGGAGAGCCAATAACACGGA-A-ATAAT 3710
Query 963 -CTTAAAGATATTAAAGATGCCGCTGCCTGATATGATGGCTGCAG-TCATGGCAATGGAT 1020
||| | | | ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 3711 GCTT-ACTAAAGTAAAGATGCCGCTGCCTGATATGATGGCTGCAGTTC-TGGCAATGGAT 3768
Query 1021 GAGTCTGTACTAGATGTTGATCAAATAGAGAATCTTATACAACTTTGCCCAACAAAGGAG 1080
||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||
Sbjct 3769 GAGTCTGTACTAGATGTTGATCAAATAGAGAATCTTATAAAATTTTGTCCAACCAAGGAG 3828
Query 1081 GAGATGGAGCTTCTTAAGAACTATACTGGTGACAAGGCAACCTTGGGAAAGTCTGAGCAG 1140
||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 3829 GAGATGGAGCTTCTTAAGAACTACACTGGTGACAAGGCGACCTTGGGAAAGTGTGAGCAG 3888
Query 1141 TGCTTACTAGAGCTAATGAAGGTGCCACGATTTGAGGCAAAGCTTAGAGTACTTTCCTTC 1200
| ||| |||||| ||||||||||||||||| | |||||||||||||||||| |||| |||
Sbjct 3889 TACTTCCTAGAGGTAATGAAGGTGCCACGAGTGGAGGCAAAGCTTAGAGTATTTTCTTTC 3948
Query 1201 AAGATTCCATTTGGCACTAAGATAACAAAATTCAGAAAAATGTT-AAATGTGGTCAATTC 1259
|| |||| ||| |||||| |||||||| |||||| ||||| ||| ||||| || |||||
Sbjct 3949 AAAATTCAATTCGGCACTCAGATAACAGAATTCAAAAAAA-GTTTAAATGCAGTAAATTC 4007
Query 1260 TGCGTGTGAGGAGGTACGTTCTTCACAAATGCTAAAAGAGATTATGAAAATTATTCTCTT 1319
||| ||||||||||| ||| |||||||| ||||||||| |||||||||| ||||| ||
Sbjct 4008 TGCATGTGAGGAGGTCCGTAATTCACAAAAGCTAAAAGAAATTATGAAAAAGATTCT-TT 4066
Query 1320 -CCTAGGGAACACACTGAACCAAGGAACTGCGAGGGGCAG-TGCAGTGGGATTCAGGTTG 1377
||| ||||||||| |||||||||||||||| |||||| | ||| || ||||||| ||||
Sbjct 4067 ACCTGGGGAACACATTGAACCAAGGAACTGCAAGGGGC-GCTGCTGTTGGATTCAAGTTG 4125
Query 1378 GATAGTTTATTGATATTAAGCGAGACACGTGCTGATAACAACAAGATGACTCTCATGCAT 1437
|| |||||||||| |||||| || |||||||||| ||||| |||||||||||||||||||
Sbjct 4126 GACAGTTTATTGAAATTAAGTGATACACGTGCTGCTAACAGCAAGATGACTCTCATGCAT 4185
Query 1438 TATCTTTGCAAGGTCCTTGCTTCCAAGGCAGCAGATCTACTGGACTTCCATAAGGATCTT 1497
||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||
Sbjct 4186 TATCTTTGCAAGGTCCTTGCTTCAAAGGCATCAGTTCTACTGGACTTCCCCAAGGATCTT 4245
Query 1498 CAAAGTCTTGAATCAACTTTAGA-GATA-AATTTGAAGTCTCTGGCTGAGGAAATACATG 1555
|||||||||||||| | | || |||| |||| ||||||||||||||||||||| || |
Sbjct 4246 GAAAGTCTTGAATCAGCCTC-GAAGATACAATT-GAAGTCTCTGGCTGAGGAAATGCAAG 4303
Query 1556 CTATAACCAAAGGATTGGAAAAACTGAAGCAGGAGCTCACCGCATCCGAAACTGATGGTC 1615
|||||| ||||||||||||||||||||| ||||| ||||| ||||| |||| ||||||||
Sbjct 4304 CTATAATCAAAGGATTGGAAAAACTGAACCAGGAACTCACTGCATCTGAAAGTGATGGTC 4363
Query 1616 CTGTTTCTCAAGTTTTCCGTAAATTATTGAAGGACTTCATATCCAGTGCTGAGACTCAAG 1675
|||||||| |||||||||||||| |||| |||||||||||||| |||||||||| |||
Sbjct 4364 CTGTTTCTGAAGTTTTCCGTAAAACATTGGGGGACTTCATATCCATTGCTGAGACTGAAG 4423
Query 1676 TAGCAACTGTATCGACTCTTTACTCC-TCG-GCGAGAATAAATGCTGATGCACTTGCACA 1733
| ||||||||||||| |||||||||| ||| | | | | |||||||||||||||||| ||
Sbjct 4424 TGGCAACTGTATCGAGTCTTTACTCCGTCGTG-G-GTAGAAATGCTGATGCACTTGCGCA 4481
Query 1734 CTATTTTGGCGAGGATCCTAACCATTATCCATTTGAAAAAGTTAGC-GCGACACTCTTGA 1792
||||||||||||||||||||||| || |||||||||| |||||| | || || |||||||
Sbjct 4482 CTATTTTGGCGAGGATCCTAACCGTTGTCCATTTGAACAAGTTA-CTGCAACCCTCTTGA 4540
Query 1793 GTTTTATAAGGTTGTTTAAGAAAGCACACCAAGAGAATGTCAAGCAAG-AG-GACTTGGA 1850
|||||||||||||||||||||||||||| ||||||| || ||||||| || | || |||
Sbjct 4541 ATTTTATAAGGTTGTTTAAGAAAGCACACGAAGAGAACGTGAAGCAAGCAGAG-CT-GGA 4598
Query 1851 GAAGAAGAAAGCT 1863
|||||||||||||
Sbjct 4599 GAAGAAGAAAGCT 4611
Score = 75.0 bits (40), Expect = 3e-12
Identities = 59/68 (87%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 2076 TGTA-GGATCCCCATCACCACCACCTCCCTCGATGAGTGGAGGAGCTCCACCGCCACCAC 2134
|||| ||| | ||| | ||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct 3149 TGTATGGAACACCACCTCCACCGCCTCCCCCGATGCGTGGAGGAGCTCCACCGCCACCAC 3208
Query 2135 CTCCACCT 2142
|||| |||
Sbjct 3209 CTCC-CCT 3215
Score = 65.8 bits (35), Expect = 2e-09
Identities = 47/53 (89%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 2266 CCACCACCAACACTTCCCTCGATGAGTGGAGGAGCTCCACCGCCACCACCTCC 2318
||||| ||| | | |||| ||||| ||||||||||||||||||||||||||||
Sbjct 3160 CCACCTCCACCGCCTCCCCCGATGCGTGGAGGAGCTCCACCGCCACCACCTCC 3212
> Ahg892707 jgi|Araly1|892707|Al_scaffold_0006_703
Length=1824
Score = 1072 bits (580), Expect = 0.0
Identities = 788/887 (89%), Gaps = 20/887 (2%)
Strand=Plus/Plus
Query 998 TGGCTGCAG-TCATGGCAAT-G--GATGAGTCTGTACTAGATGTTGATCAAATAGAGAAT 1053
||||||||| || | ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 926 TGGCTGCAGTTC-TTGCAATGGATGATGAGTCTGTACTAGATGTTGATCAAATAGAGAAT 984
Query 1054 CTTATACAA-CTTTGCCCAACAAAGGAGGAGATGGAGCTTCTTAAGAACTATACTGGTGA 1112
|||||| || |||| |||||| |||||||| || ||||||||||||| ||| |||| |||
Sbjct 985 CTTATA-AACCTTTTCCCAACCAAGGAGGATATAGAGCTTCTTAAGACCTACACTGATGA 1043
Query 1113 CAAGGCAACCTTGGGAAAGTCTGAGCAGTGCTTACTAGAGCTAATGAAGGTGCCACGATT 1172
||||| ||||||||||||| ||||||| | | | |||||||| ||||||||||||| |
Sbjct 1044 CAAGGGGACCTTGGGAAAGTGGGAGCAGTACGTCCAAGAGCTAACGAAGGTGCCACGACT 1103
Query 1173 TGAGGCAAAGCTTAGAGTACTTTCCTTCAAGATTCCATTTGGCACTAAGATAACAAAATT 1232
|| ||||||| |||||| ||||||||||||||| ||||| |||| |||||||| || |
Sbjct 1104 AGAATCAAAGCTGAGAGTATTTTCCTTCAAGATTCAATTTGCCACTCAGATAACAGAACT 1163
Query 1233 CAGAAAAA-TGTTAAATGTGGTCAATTCTGCGTGTGAGGAGGTACGTTCTTCACAAATGC 1291
|| ||||| | ||||||| | | |||||||| ||||||||||| ||| ||||| ||| ||
Sbjct 1164 CA-AAAAAGTTTTAAATGCGATAAATTCTGCATGTGAGGAGGTTCGTACTTCAGAAAAGC 1222
Query 1292 TAAAAGAGATTATGAAAATTATTCTCTTCCTAGGGAACACACTGAACCAAGGAACTGCGA 1351
|||||||||||||||||| |||||||| ||| ||||||| | ||||||||||||||||||
Sbjct 1223 TAAAAGAGATTATGAAAACTATTCTCTGCCTGGGGAACATATTGAACCAAGGAACTGCGA 1282
Query 1352 GGGGCAGTGCAGTGGGATTCAGGTTGGATAGTTTATTGATATTAAGCGAGACACGTGCTG 1411
||| ||||| |||||||||| |||||| |||||||||| ||||||||| |||||||||
Sbjct 1283 AGGGAAGTGCCGTGGGATTCAAGTTGGACAGTTTATTGAAATTAAGCGACACACGTGCTT 1342
Query 1412 ATAACAACAAGATGACTCTCATGCATTATCTTTGC-A--AGGTCCTTGCTTCCAAGGCAG 1468
||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1343 CTAACAGCAACATGACTCTCATGCATTATCTTTGCAAGCAGGTCCTTGCTTCCAAGGCAT 1402
Query 1469 CAGATCTACTGGACTTCCATAAGGATCTTCAAAGTCTTGAATCAACTTTAGAGATA-AAT 1527
|||||||||| |||||||||||||||||| |||||||||||||| ||| | ||||| ||
Sbjct 1403 CAGATCTACTAGACTTCCATAAGGATCTTGAAAGTCTTGAATCAGCTTCAAAGATACAA- 1461
Query 1528 TTGAAGTCTCTGGCTGAGGAAATACATGCTATAACCAAAGGATTGGAAAAACTGAAGCAG 1587
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct 1462 ATGAAGTCTCTGGCTGAGGAAATACAAGCTATAATCAAAGGATTGGAAAAACTGAACCAG 1521
Query 1588 GAGCTCACCGCATCCGAAACTGATGGTCCTGTTTCTCAAGTTTTCCGTAAATTATTGAAG 1647
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 GAGCTCACTGCATCCGAAAGTGATGGTCCTGTTTCTCAAGTTTTCCGTAAATTATTGAAG 1581
Query 1648 GACTTCATA-TCCAGTGCTGAGACTCAAGTAGCAACTGTATCGACTCTTTACTCC-TCG- 1704
||||||||| || | ||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 1582 GACTTCATAATC-ATTGCTGAGACTCAAGTAGAAACTGTATCGATTCTTTACTCCGTCGT 1640
Query 1705 GCGAGAATAAATGCTGATGCACTTGCACACTATTTTGGCGAGGATCCTAACCATTATCCA 1764
| | ||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1641 G-G-GAAGAAACGCTGATGCACTTGCACACTATTTTGGCGAGGATCCTAAACATTATCCA 1698
Query 1765 TTTGAAAAAGTTAGCGCGACACTCTTGAGTTTTATAAGGTTGTTTAAGAAAGCACACCAA 1824
||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1699 TTTGACAAAGTTACCGCGACTCTCTTGAGTTTTATAAGGTTGTTTAAGAAAGCACACGAA 1758
Query 1825 GAGAATGTCAAGCAAGAGGACTTGGAGAAGAAGAAAGCTGCAACGGA 1871
|||||| ||||||||| ||| |||||||||||||||||||||| |||
Sbjct 1759 GAGAATATCAAGCAAGCGGAGTTGGAGAAGAAGAAAGCTGCAAAGGA 1805
Score = 97.1 bits (52), Expect = 6e-19
Identities = 68/75 (91%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 189 GATCACTGGCGCTGATGCCGTGGTGACGCCTCCTATGCGTGGAAGAGTACCACTTCCACC 248
|||| ||||||||||||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 426 GATCTCTGGCGCTGATGCTGTGGTG--G-CGCCTATGCGTGGAAGAGTACCACTTCCACC 482
Query 249 ACCGCCTCCTCCTCC 263
||| |||||||||||
Sbjct 483 ACCACCTCCTCCTCC 497
> Ahg925145 jgi|Araly1|925145|scaffold_200706.1
Length=2323
Score = 1048 bits (567), Expect = 0.0
Identities = 792/899 (88%), Gaps = 22/899 (2%)
Strand=Plus/Plus
Query 974 TAAAGATGCCGCTGCCTGATATGATGGCTGCA-GTCATGGCAATGGATGAGTCTGTACTA 1032
|||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||
Sbjct 1348 TAAAGATGCCGCTGCCTGATATAATGGCTGCACTTC-TAGCAATGGATGAGTCTGTACTA 1406
Query 1033 GATGTTGATCAAATAGAGAATCTTATACA-ACTTTGCCCAACAAAGGAGGAGATGGAGCT 1091
||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 1407 GATATTGATCAAATAGAGAATCTTATA-AGGTTTTGCCCAACAAAGGTGGAGATGGAGCT 1465
Query 1092 TCTTAAGAACTATACTGGTGACAAGGCAACCTTGGGAAAGTCTGAGCAGTGCTTACTAGA 1151
|||| ||| |||||||||||||||||||||||||||||||| ||| |||| ||| |||||
Sbjct 1466 TCTTGAGAGCTATACTGGTGACAAGGCAACCTTGGGAAAGTGTGACCAGTACTTCCTAGA 1525
Query 1152 GCTAATGAAGGTGCCACGATTTGAGGCAAAGCTTAGAGTACTTTCCTTCAAGATTCCATT 1211
||| |||||||| ||| || | || | ||||| ||||| ||||||||||||||| |||
Sbjct 1526 GCTTATGAAGGTTCCAGGAGTAGAATCGAAGCTGAGAGTGTTTTCCTTCAAGATTCAATT 1585
Query 1212 TGGCACTAAGATAACAAAATTCAGAAAAATG-TTAAATGTGGTCAATTCTGCGTGTGAGG 1270
||||||||||| ||| || ||| | ||| | ||||||| ||| |||||||| ||| |||
Sbjct 1586 CGGCACTAAGATCACAGAACTCA-ATAAAGGTTTAAATGCGGTAAATTCTGCATGTAAGG 1644
Query 1271 AGGTACGTTCTTCAC-AAATGCTAAAAGAGATTATGAAAATTATTCTCTTCCTAGGGAAC 1329
|||| ||| |||| | ||| ||||||||||||||||||||||||||||| | | ||||||
Sbjct 1645 AGGTCCGTACTTC-CGAAAAGCTAAAAGAGATTATGAAAATTATTCTCTGCTTGGGGAAC 1703
Query 1330 ACACTGAACCAAGGAACTGCGAGGGGCAGTGCAGTGGGATTCAGGTTGGATAGTTTATTG 1389
| | |||||||||||||||| | |||||||||||||||||||| |||||| |||||||||
Sbjct 1704 ATAATGAACCAAGGAACTGCCAAGGGCAGTGCAGTGGGATTCAAGTTGGACAGTTTATTG 1763
Query 1390 ATATTAAGCGAGACACGTGCTGATAACAACAAGATGACTCTCATGCATTATCTTTGCAAG 1449
||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 1764 ATATTAAGCGACACACGTGCTGCTAACAGCGAGATGACTCTCATGCATTATCTTTGCAAG 1823
Query 1450 GTCCTTGCTTCCAAGGCAGCAGATCTACTGGACTTCCATAAGGATCTTCAAAGTCTTGAA 1509
|||||||||||||||||| |||||||||| || ||||||||||||||| |||||||||||
Sbjct 1824 GTCCTTGCTTCCAAGGCATCAGATCTACTAGATTTCCATAAGGATCTTGAAAGTCTTGAA 1883
Query 1510 TCAACTTTAGAGATAAATTTGAAGTCTCTG-GCTGAGGAAATAC-ATGCTATAACCAAAG 1567
||| ||| | ||||| | ||||||| | | || |||||||| | |||||||||||||
Sbjct 1884 TCAGCTTCAAAGATACACTTGAAGT-TGTTAGCCGAGGAAATTGTA-GCTATAACCAAAG 1941
Query 1568 GATTGGAAAAACTGAAGCAGGAGCTCACCGCATCCGAAACTGATGGTCCTGTTTCTCAAG 1627
||||||||||||| || || |||||||| ||| |||||| ||||||||| ||||||||||
Sbjct 1942 GATTGGAAAAACTTAACCATGAGCTCACTGCAACCGAAAGTGATGGTCCCGTTTCTCAAG 2001
Query 1628 TTTTCCGTAAATTATTGA-AGGACTTCATA-TCCAGTG-CTGAGACTCAAGTAGCAACTG 1684
|||||||||| ||||||| || |||||||| | | || ||||||||||||||||||| |
Sbjct 2002 TTTTCCGTAATTTATTGAGAG-ACTTCATAATT-A-TGGCTGAGACTCAAGTAGCAACGG 2058
Query 1685 TATCGACTCTTTACTCCTCGGCGAGAATAAATGCTGATGCACTTGCACACTATTTTGGCG 1744
|||||| |||||||||| | | | ||| ||||||||||||||||||||||||||||| ||
Sbjct 2059 TATCGAGTCTTTACTCCACCGTGGGAAGAAATGCTGATGCACTTGCACACTATTTTGACG 2118
Query 1745 AG-GATCCTAACCATTATCCATTTGAAAAAGTTAGC-GCGACACTCTTGAGTTTTATAAG 1802
|| | |||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2119 AGAG-TCCTAACCATTATCCATTTGAAAAAGTT-GCCGCGACACTCTTGAGTTTTATAAG 2176
Query 1803 GTTGTTTAAGAAAGCACACCAAGAGAATGTCAAGCAAGAGGACTTGGAGAAGAAGAAAG 1861
||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||
Sbjct 2177 GTTGTTTAAGAAAGCACACGAAGAGAATGTCAAGCAAGCGGAGTTGGAGAAGAAGAAAG 2235
Score = 409 bits (221), Expect = 6e-113
Identities = 468/579 (81%), Gaps = 50/579 (9%)
Strand=Plus/Plus
Query 726 TCCAGTTACAAAAAGGTCTTCCCTGAAGC-CTTTACATTGGGTTAAAATAACAAGGGCTT 784
||||| || ||||| ||| |||||||||| | ||||| |||||||||||||||| |||||
Sbjct 275 TCCAGCTAAAAAAAAGTCCTCCCTGAAGCGC-TTACACTGGGTTAAAATAACAAAGGCTT 333
Query 785 TGCAGGGGAGCTTATGGGATGAGTTAC--AGA-TACAA-TAT---G-G--A--GA--ATC 830
||| ||||||||||||||||||||||| ||| |||| || | | | || ||
Sbjct 334 TGCCGGGGAGCTTATGGGATGAGTTACAGAGACGACAAGCATGCCGCGATATCGAGGATG 393
Query 831 ACAA-A----C--TGCAATAGAACTTGATGTACCAGAAATAGAGACCCTTTTCTCTGTTG 883
| || | | |||| ||||||||||||| |||||||||||| |||||||||| ||
Sbjct 394 AAAAGATTTTCTGTGCAGCAGAACTTGATGTATCAGAAATAGAGAACCTTTTCTCTCTT- 452
Query 884 GGGCAAAACCAAGACCAAAACCAAAACCTGAAAAAGTTCCACTGATTG---ACCTTAAGA 940
||| | |||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 453 GGG---------G--CAAAACCAAAACCTAAAAAAGTTCCACTGATTGACAACCTTTGGA 501
Query 941 GAGC-CAATAACAC-GATAGTTA-ACTTAAAGATATTAAAGATGCCGCTGCCTGATATGA 997
|||| | | |||| || | ||| | ||| | ||||||| || | |||||||||| |||
Sbjct 502 GAGCTC-ACGACACGGA-AATTAGGC-TAATGTTATTAAATATTCGGCTGCCTGATCTGA 558
Query 998 TGGCTGCAGTCATGGCAATGGATGAGTCTGTACTAGATGTTGATCAAATAGAG-AATCTT 1056
|||||||| |||||||||||||||||||||||||||| |||||| ||||| || ||||||
Sbjct 559 TGGCTGCAATCATGGCAATGGATGAGTCTGTACTAGACGTTGATGAAATA-AGGAATCTT 617
Query 1057 ATACAAC-TTTGCCCAACAAAGGAGGAGATGGAGCTTCTTAAGAACTATACTGGTGACAA 1115
||| ||| ||| |||||| |||||||| |||||||||||||||| ||| |||||||||||
Sbjct 618 ATA-AACCTTTTCCCAACCAAGGAGGATATGGAGCTTCTTAAGACCTACACTGGTGACAA 676
Query 1116 GGCAACCTTGGGAAAGTCTGAGCAGTGCTTACTAGAGCTAATGAAGGTGCCACGATTTGA 1175
|| ||| || ||||| ||||||| ||| | |||||||||||||||||||||| | ||
Sbjct 677 GGGGACCGTGAGAAAGAGGGAGCAGTACTTCCAAGAGCTAATGAAGGTGCCACGAGTAGA 736
Query 1176 GGCAAAGCTTAGAGTACTTTCCTTCAAGATTCCATTTGGCACTAAGATAACAAAATTCAG 1235
||||||| |||||| ||||||||||||||| ||||| ||||||||||||| |||| |
Sbjct 737 ATCAAAGCTGAGAGTATTTTCCTTCAAGATTCAATTTGCCACTAAGATAACAGAATTAAA 796
Query 1236 AAAAATGTTAAATGTGGTCA-ATTCTGCGTGTGAGGAGG 1273
||||| ||||| |||||| | ||||||| ||||||||||
Sbjct 797 AAAAAGGTTAAGTGTGGT-AGATTCTGCTTGTGAGGAGG 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100253524840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5