BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07790.1
Length=2453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487610 jgi|Araly1|487610|fgenesh2_kg.6__744__AT5G07790.1 3024 0.0
> Ahg487610 jgi|Araly1|487610|fgenesh2_kg.6__744__AT5G07790.1
Length=2264
Score = 3024 bits (1637), Expect = 0.0
Identities = 2008/2183 (92%), Gaps = 41/2183 (2%)
Strand=Plus/Plus
Query 250 AAAAGAACGAAGCTTTGT-GTTAAAATCTCAGAATTTTGATTATTCTTCGGATTGaaaaa 308
||||||| |||||||| | |||||||||||||||||||| |||||||||||||| ||||
Sbjct 102 AAAAGAAAGAAGCTTT-TAGTTAAAATCTCAGAATTTTGGTTATTCTTCGGATTTTAAAA 160
Query 309 aaCTGTTCC-TTTTCCTAAAGAGTGTGAAAGTGAATGAAGAATGCAGCAGAACAGCTTTT 367
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 161 AACTGTTCCTTTTTTCTAAAGAGTGTGAAAGTGAATGAAGAATGCAGCAGAACAGCTATT 220
Query 368 TCCTTGGGGT-AAACCGTGACATTACGGATGCTAGAACTGCCTCTGGCTGGAGTTTGTGT 426
||||| |||| ||||||||| | ||||||||| |||| |||||||||||||||||
Sbjct 221 TCCTT-GGGTCAAACCGTGATACTACGGATGCGAGAA------CTGGCTGGAGTTTGTGT 273
Query 427 CCTGTACTA-GACATTGATACGACTAGATACGGCGTGAACGTGCATGTTGATGATACATT 485
||||||| | ||||||||||||| |||||||||||| |||||| || || ||||||||||
Sbjct 274 CCTGTAC-AGGACATTGATACGAATAGATACGGCGTCAACGTGAATCTTAATGATACATT 332
Query 486 CTCTTTCTTGTATAGTGATCTTTATCTTAGACAAGTAAAAGAAGCATTAAGACACACCAT 545
|||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||
Sbjct 333 CTCTTTCTTGTATAGTGATCTTTATCTTAGACAAGTGAAGGAAGCATTGAGACAAACCAT 392
Query 546 GCTTGTACATGAATCTGTCTTTGAAAGTCAGATCTGTGAGCTTCATCGTCTGTATCGGAA 605
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 393 GCTTGTACAAGAATCTGTCTTTGAAAGTCAGATCTATGAGCTTCATCGTCTGTATCGGAA 452
Query 606 GCAGAAGGAGCTGATGATGGAAATGGAGGAAACTCGACATAATAAGGCCTTGTACTTGAA 665
||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 453 GCAGAAGGAACTGATGATTGAAATGGAGGAAACTCGGCATCATAAGGCCTTGTACTTAAA 512
Query 666 TTCTGGTTTGCCTATCCCTAGAACACACTGGATGAGTTCGAGCATTTCCGCATACCAAAC 725
||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 513 TTCTGGTTTGCATATCCCTAGGACACACTGGATGAGTTCGAGCATTTCCGCGTATCAAAC 572
Query 726 TAGGAATTTGCCTCATGAAGAAGAAAACATTTCTAGACTTCTTGTAGATAACAAGGTTGA 785
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 573 TAGGAATTTGCCTCATGAAGAAGAAGACATTCCTAGACTTGTTGTAGATAACAAGGTTGA 632
Query 786 GAAGTTTGAAAAGAAGAAGGTCTTGGATCTTGAATTACCGGTTTTTGAGTATAGTGATAT 845
||||||| || ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 633 CAAGTTTG--AA-AAGAAGGTCTTGGATCTTGAAGTACCGGTTTTTGAGTATAATGATAT 689
Query 846 GCTTGAAGAAGTCCATGAAGCTCAAAACTTTTTGGAAGAGCAATCTCTGCAAAGGATGTC 905
||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 690 GCTTGGAGAAGTTCATGAAGCTCAAAACTTTTTGGAAGAGCAATCTCTGAAAAGGATGTC 749
Query 906 TCTGGATTCGGGTAAGCAGTCGAGTAAGCTACAACTTGATTTGAATGAACCTGCCAAGAT 965
||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 750 TCTTGATTCGGGTAAGCAGTTGAGTAAGCTACTACTTGATTTGAATGAACCGGCCAAGAT 809
Query 966 TGAGGAACATTCAGATTATGTGTTCAATCAGTTTCTAAGTTCAGTTATATCAAATGAAAT 1025
|||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 810 CGAGGAACATTCAGATTATGTGTTCAATCAGTTCCTAAGTACAGTTACATCAAATGAAAT 869
Query 1026 TGGAGAAGAGTCTGATACAAAGAATGAGGGAGAAAGTTTAGTAAAAGGTTCCAATGGGAT 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 870 TGGAGAAGAGTCTGATACAAAGAATGAGGGAGAAAGTTTAGTAAAAGGTTCCAACGGGAT 929
Query 1086 AAATGAAGCGCAAGGATCTGTAAAATGTCGAGAAGATTACGTAATTGACTTGAATATGTC 1145
|||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||
Sbjct 930 GGATGAAGCGCAAGAATCTGTCAAATGTCGAGAAGAGTACGTAATTGACTTGAATTTGTC 989
Query 1146 TCCCCCGTCATCCGAAGAAGAATTAACTATTGTTAAGAAGTTTGAAACCGAGAAACCTCA 1205
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 990 TCCCCTTTCATCCGAAGAAGAAGTACCTATTGTTAAGAAGTTTGAAACCGAGAAACCTCG 1049
Query 1206 AGAGTCTTCTTCAGTTTCGCTGCATGGAAAACACGGTTTAGATCAGCCGCAAGGGGTTGT 1265
|| ||||||||||||||| |||||||||||||||||| ||| ||||||| || ||||||
Sbjct 1050 AGGGTCTTCTTCAGTTTCATTGCATGGAAAACACGGTTCAGAGCAGCCGCGAGTGGTTGT 1109
Query 1266 CCAAGAGCTACCATGTTTAACTAGCACTTTACTTTTGGACAAGCGATATAAGTCATTGAT 1325
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CCAAGCGCTACCATGTTTAACTAGCACTTTACTTTTGGACAAGCGATATAAGTCATTGAT 1169
Query 1326 GACAAGG-TCAAGGTCAAGGAACAAGGTAAAACATTGTCCAAGCAACAAAACCTTCAAAG 1384
|| ||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 1170 GA-GAGGCTCAAGGTCAAGGAAGAAGGTAAAACTTTGTCCAAGCAACATAACCTTCAAAG 1228
Query 1385 GCTCAGATCATGACCCGCACTCGAGTGGTCAAGCCTCCTCAGAATCTCAAAGCAATCAAA 1444
||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1229 GCTCAGATCATGACCCGCAGTCGAGTGCTCAAGCCACCTCAGAATCTCAAAGCAATCAAA 1288
Query 1445 CGAGTATGGAGAAAGGGAGTTCAAGTTCTTTGTCTGAGGCAAAATCTGCAAAAAAGGGGA 1504
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1289 CGAGTATGGAGAAAGGGAGTTCAAGTTCTTTGTCTGAGGCAAAATCTGTAAAAAAGGGGA 1348
Query 1505 CTAGTCTAGGAAACAAAAGGCATTGTAAACCACAAATGAAATCCAGTAAGGGTCAAAAAG 1564
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1349 CTAATCTAGGAAAGAAAAGGCATTGTAAACCACAAATGAAATCCAGTAAGGGTCAAAAGG 1408
Query 1565 TAGTTGCGAAAAGGAGTGGAAGAGTTAAACGGAAGAGGAGCAGAAGGATATCTCTTGTTG 1624
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1409 TAGTCGCGAAAAGGAGTGGAAGAGTTAAACGGAAGAAGAGCAGAAGGATATCTCTAGTTA 1468
Query 1625 CAGAGGGAAATTATCAACAAGTATCTGCAGCTGAGGCTATAGTTGATATTTCTAGAAAGT 1684
||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 1469 CAGAGGGAAATTATCAAGAAGTATCTGCAGCTAAGGCCATAGTTGATATGTCTAGAAAGT 1528
Query 1685 CTGGTCGAGAAACTGCTGCTTGTATCACTTCCTTAAGCAAAAATCTACTTTGGTTCGCCG 1744
||| ||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1529 CTGCTCGAGAAACGGCTGATTGTATCACTTCTTTAAGCAGAAATCTACTTTGGTTCGCCG 1588
Query 1745 ACATTTCTTCCTCGGTTGCTGAGGACAACAAAATAGACACATT-GCAGCTGACAGAAAAG 1803
| |||||||| || |||||||||||| |||||| ||| | || | |||||||||| |||
Sbjct 1589 AGATTTCTTCTTCTGTTGCTGAGGACTACAAAACAGA-ATTTTTGGAGCTGACAGAGAAG 1647
Query 1804 AAGCTAGAGGAGCACGAGACAAATCTAAGGTTGAACTCTTCAGACAACATTGCAGCAGTC 1863
|||||||||||||| |||||| |||| || |||||||||| ||||||||| |||||||||
Sbjct 1648 AAGCTAGAGGAGCAGGAGACAGATCTGAGATTGAACTCTTTAGACAACATAGCAGCAGTC 1707
Query 1864 TCCAGCATTGTCCTTAAAAAGCAGAGGAGAAGCCGAGCCAGGCAAGGGAAGCGGAAATGC 1923
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1708 TCCAGCATTGTCCTTAAAAAGCAGAGGAGAAGCCGAGCCTGGCAGGGGAAGCGGAAATGC 1767
Query 1924 CAAGATGACCAGCAC-AT--T-----G--T---GGACACATTTTCAGAATGGGAAGCTAA 1970
|||||||||||||| || | | | ||| |||||||||||||| ||||| ||
Sbjct 1768 AAAGATGACCAGCACGATGATAACCCGAGTTTAGGA-ACATTTTCAGAATGTGAAGCCAA 1826
Query 1971 TGATGATCTGCAGGTAATAGGAAAGCTAATGGAAGCGTCTGACTTAAAATGGAATTGCTG 2030
||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||
Sbjct 1827 TGAGGATCTGCAGGTAATAGGAAAGTTAATTGAAGCGTCTGAATTAAAATGGAATTG-TG 1885
Query 2031 G-TTCCCTAAGAACAAGAGCAAAAGCTCTCCTCCTAAACCAGTAGATGCTTTCACTTCCT 2089
| ||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1886 GGTTCCCCAAGAACAAGCGCAGAAGCTCTCCTCCTAAACCAATAGATGCTTTCACTTCCT 1945
Query 2090 CCGGGGAAGAAAAAACAGGCGTCGATTGGGGAGCATTAAGAAAGCGAAGACGAGGCTCTA 2149
| ||||||| |||||| ||||| || |||||||| |||| ||||||||||||||||||||
Sbjct 1946 CGGGGGAAGCAAAAACGGGCGTTGACTGGGGAGCCTTAAAAAAGCGAAGACGAGGCTCTA 2005
Query 2150 GAATTCCTGCTGCTGATTTTAAGCATATGATCATCAACCAAGTAGTATAGCCAAACTAAA 2209
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 GAATACCTGCTGCTGATTTTAAGCATATGATCATCAACCAAGTAGTATAGCCAAACTAAA 2065
Query 2210 GAGGTAATT-ACAATACTTGCTATAGTTTGCTTCATGtttttttGGAGAATCAAGAATCT 2268
||||||||| ||| ||||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 2066 GAGGTAATTTACATTACTTACCATAGTTTGCTTCATGTTTTTTCGGAGAATCAAGAATCT 2125
Query 2269 TACGGAAGATGATGATTTTTGTAACAAGTCTTGTTCTAGAAATGAAGACTACATAGGAGA 2328
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2126 TACGGAAGATGATGCTTTTTGTAACAAGTCTTGTTCTAGATATGAAGACTACATAGGAGA 2185
Query 2329 TGATATTAAACTGTTAGAATATCAGTTCATCAAAAGGCAAAGAATGTGTGTTTAAACTGG 2388
| || | ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 2186 T-AT-T-AAACTGTTAGAATATCAGTTCATCAAAAGGCAATGAATCTGT-TTTAAACTGG 2241
Query 2389 AGATGGTACTGAAGAAGTTATAC 2411
|||||||||||||||||||||||
Sbjct 2242 AGATGGTACTGAAGAAGTTATAC 2264
Score = 134 bits (72), Expect = 4e-30
Identities = 92/102 (90%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 91 TCTCCAAAGATAATGGCCCAGCAGATCTCAGATATATAGAAGATCCCTCTTCTTTTGGTC 150
||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||
Sbjct 1 TCTCCAAAGATAATGGCCCAGCAGATCTCGGATACATAAAAGATCCCTGTTCTTTTGGTG 60
Query 151 CACTTTCCCTTGTTTACATTTTCCCGAGAAAACAAAAAGAAA 192
||||||| ||| ||| ||||||||||| |||| |||||||||
Sbjct 61 CACTTTCTCTTTTTTGCATTTTCCCGATAAAAGAAAAAGAAA 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92445024615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5