BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07800.1
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325389 jgi|Araly1|325389|fgenesh1_pm.C_scaffold_6000609 2300 0.0
Ahg496285 jgi|Araly1|496285|fgenesh2_kg.8__2101__AT5G61290.1 1013 0.0
> Ahg325389 jgi|Araly1|325389|fgenesh1_pm.C_scaffold_6000609
Length=1383
Score = 2300 bits (1245), Expect = 0.0
Identities = 1338/1384 (97%), Gaps = 2/1384 (0%)
Strand=Plus/Plus
Query 56 ATGGTTACGTTCACATCAGAAGCATCAAGGAGCCGATCAAAGAAGGTATGTGTGATCGGA 115
|||||| || | ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGTTTCGGTGACATCCGAAGCATCAAGGAGCCGATCAAAGAAGGTATGTGTTATCGGA 60
Query 116 GCTGGACCGGCGGGGTTAGTCTCGGCAAGGGAGCTAAGAAAAGAAGGACACAAAGTGGTG 175
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGGACCGGCGGGGCTAGTCTCGGCAAGGGAGCTAAGAAAAGAAGGACACAAAGTGGTG 120
Query 176 GTGTTGGAGCAAAACGAAGACGTAGGAGGTCAATGGTTCTATCAACCAAACGTAGAAGAA 235
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GTGTTGGAGCAAAACGACGACGTAGGAGGTCAATGGTTGTATCAACCAAACGTAGAAGAA 180
Query 236 GAAGATCCCTTAGGAAGAAGTAGTGGTTCCATTAATGGTGAACTGAAGGTCCATAGCAGC 295
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 GAAGATCCATTAGGAAGAAGTAGTGGTTCTATTAATGGTGAACTTAAGGTCCATAGCAGC 240
Query 296 ATTTACTCTTCCTTGAGGCTAACCTCACCGAGAGAGATAATGGGTTATTCGGATTTTCCG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTTACTCTTCCTTGAGGCTAACCTCACCGAGAGAGATAATGGGTTATTCGGATTTTCCG 300
Query 356 TTTTTGGCGAAGAAAGGGAGAGATATGAGGAGGTTTCCAGGGCATAAGGAGCTTTGGTTG 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTTTGGCGAAGAAAGGGAGAGACATGAGGAGGTTTCCAGGGCATAAGGAGCTTTGGTTG 360
Query 416 TATCTTAAGGACTTTAGTGAAGCTTTTGGGTTAAGAGAGATGATTAGGTTTAATGTTAGG 475
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 361 TATCTTAAGGACTTTAGTGAAACTTTTGGGTTAAGAGATATGATTAGGTTTAAGGTTAGG 420
Query 476 GTTGAGTTTGTAGGAGAAAAAGAAGAAGAGGATGATGTGAAGAAGTGGATTGTGAGAAGT 535
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 421 GTTGAGTTTGTAGGAGAAAAAGAAGAAGAAGATGATGTGAAGAAGTGGATTGTGAGGAGT 480
Query 536 AGAGAGAAATTTAGTGGTAAGGTTATGGAAGAGATCTTTGATGCTGTTGTTGTTGCTACT 595
| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAAGAGAAACTAAGTGGTAAGGTTATGGAAGAGATCTTTGATGCTGTTGTTGTTGCTACT 540
Query 596 GGTCATTACTCTCACCCTAGATTGCCCTCTATTAAAGGAATGGATTCTTGGAAAAGGAAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTCATTACTCTCACCCTAGATTGCCCTCTATTAAAGGAATGGATTCTTGGAAAAGGAAG 600
Query 656 CAAATTCATAGCCATGTTTACAGGGTGCCTGATCCATTTCGTAATGAGGTGGTGGTGGTG 715
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 CAAATTCATAGCCATGTTTACAGGGTGCCTGATCCATTTAGTAATGAGGTGGTGGTGGTG 660
Query 716 GTTGGGAACTCAATGAGTGGACAAGACATATCAATGGAGCTTGTGGAAGTGGCAAAGGAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTGGGAACTCAATGAGTGGACAAGACATATCAATGGAGCTTGTGGAAGTGGCAAAGGAA 720
Query 776 GTTCATTTAAGTGCCAAGACACTTGATATATCTTCTGGCCTTTCAAAAGTCATTTCCAAA 835
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GTTCATTTAAGTGCCAAGACACTTGATATATCTTCTGGCCTTTCCAAAGTCATTTCCAAA 780
Query 836 CACCCAAACCTTCTTATTCACCCACAGATTGAATCTTTAGAGGATGATGGGAAAGTCATT 895
||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 781 CACTCAAACCTTCTTATTCATCCACAGATTGAATCTTTAGAGGATGATGGGAGAGTCATT 840
Query 896 TTTGTGGATGGTTCTTGGGTCGTCGCTGATACAATTTTATATTGCACCGGGTACTCGTAC 955
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTTGTGGATGGATCTTGGGTCGTCGCTGATACAATTTTATATTGCACCGGGTACTCGTAC 900
Query 956 AAGTTTCCATTTCTTGAGAGTAAAGGAAGAATAGAAGTGGATGATGATAGAGTTGGTCCA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGTTTCCATTTCTTGAGAGTAAAGGAAGAATAGAAGTGGATGATGATAGAGTTGGTCCA 960
Query 1016 CTCTTCGAACACACTTTCCCTCCTTGTCTCTCCCCTTCTCTCTCCTTTGTCGGTATCCCC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTCTTCGAACACACTTTCCCTCCTTGTCTCTCCCCTTCTCTCTCCTTTGTCGGTATCCCC 1020
Query 1076 AGAAAGTTGATAGGATTCCCATTCTTTGAAGCACAAGCAAAATGGATAGCACAAGTTTTG 1135
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 AGAAAGTTGATAGGATTCCCATTCTTTGAAGCACAAGCAAAATGGATAGCTCAAGTTTTG 1080
Query 1136 TCAGGAAAGTCATCTCTTCCTTCTCCTGACCAAATGTTACAATCAGTAGAC-GAGTTTTA 1194
||||||||||||| ||| |||||| ||||||||||||||||||| || | | || |||||
Sbjct 1081 TCAGGAAAGTCATTTCTACCTTCTTCTGACCAAATGTTACAATCCGTTG-CTGAATTTTA 1139
Query 1195 CCGGTCAAGAGATCTAGCCGGAGTCCCTAAACACAACACTCACGACATTGCCGATTTCAC 1254
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 CCGGTCAAGAGATCTCGCTGGAGTCCCTAAACACAACACTCACGACATTGCTGATTTCAC 1199
Query 1255 GTATTGCGATAAGTACGCGGATTATGTTGGGTTTCCGCATTTAGAAGATTGGAGAAAGCT 1314
|||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1200 GTATTGCGATAAATATGCGGATTATGTTGGGTTTCCGCATTTGGAAGAATGGAGAAAGCT 1259
Query 1315 ACTATGTTTGTCTGCTCTCAATAATTCACAAGAAAATCTTGAGACTTATCGCGATTCTTG 1374
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1260 ACTATGTTTGTCTGCTCTCAATAATTCACAGGAAAATCTTGAGACTTATCGTGATTCTTG 1319
Query 1375 GGATGATCATGAACTCCTACAAGAAGCTCTTCAAAGCTCTCATTTCACAAACTTCAATTC 1434
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1320 GGATGATCATGAACTCCTACAAGAAGCTCTTCAAAGCTCTCATTTTACAAACCTCAATTC 1379
Query 1435 TTGA 1438
||||
Sbjct 1380 TTGA 1383
> Ahg496285 jgi|Araly1|496285|fgenesh2_kg.8__2101__AT5G61290.1
Length=1431
Score = 1013 bits (548), Expect = 0.0
Identities = 1096/1350 (81%), Gaps = 79/1350 (6%)
Strand=Plus/Plus
Query 91 ATCAAAGAAGGTATGTGTGATCGGAGCTGGACCGGCGGGGTTAGTCTCGGCAAGGGAGCT 150
|||||||| |||||||||||| ||||| ||||| | |||||||| ||||| | |||||
Sbjct 39 ATCAAAGACGGTATGTGTGATAGGAGCAGGACCATCCGGGTTAGTGTCGGCGCGAGAGCT 98
Query 151 -AAGAAAAGAAGGACACAAAGTGGTGGTGTTGGAGCAAAACGAA-GACGTAGGAGGTCAA 208
||| ||||||||||| |||||||||||| ||||||||||| || ||||||||||||||
Sbjct 99 AAAG-AAAGAAGGACATAAAGTGGTGGTGATGGAGCAAAAC-AACGACGTAGGAGGTCAG 156
Query 209 TGGTTCTATCAACCAAACGTAGAAGAAGAAGATCCCTTAGGAAGAAGTAGTGGTTCCATT 268
||| | || |||||||||||||||||||||||| | || |||| || | |||
Sbjct 157 TGGCTATACCAACCAAACGTAGAAGAAGAAGATACATTGGGAA-AA--A------CCA-A 206
Query 269 AATGGTGAACTGAAGGTCCATAGCAGCATTTACTCTTCCTTGAGGCTAACCTCACCGAGA 328
||| | || || || |||||||| ||||||| ||||||||| | | || ||||||
Sbjct 207 AATCCT-AA---AA-GTACATAGCAGTGTTTACTCATCCTTGAGGTTGGCTTCGCCGAGA 261
Query 329 GAGATAATGGGTTAT-TCGGATTTTCCGTTTTTGGCGAAGAAAGGGAGAGATAT-GAGGA 386
||| ||||||||| | || ||||||||||| |||||| |||| ||||| | |||||
Sbjct 262 GAGGTAATGGGTT-TCTCTGATTTTCCGTTCACCGCGAAGGAAGGAAGAGA-CTCGAGGA 319
Query 387 GGTTTCCAGGGCATAAGGAGCTTTGGTTGTATCTTAAGGACTTTAGTGAAGCT-TTTGGG 445
| || || |||||| ||||||||||||||||||||||||| ||| || ||| | ||||||
Sbjct 320 GATTCCCGGGGCATGAGGAGCTTTGGTTGTATCTTAAGGATTTTTGTCAAG-TGTTTGGG 378
Query 446 TTAAGAGAGATGATTAGGTTTAATGTTAGGGTTGAGTTTGTAGGAGAAAAA-GAA-GAAG 503
|||||||| |||||||||||||||||||||||||||||||| || ||| ||| ||||
Sbjct 379 TTAAGAGATATGATTAGGTTTAATGTTAGGGTTGAGTTTGT-GG-GAATGGTGAATGAAG 436
Query 504 AGGATGATGTGAAGA-AGTGGATTGTGA-GAAGTAG-AGAGAAATTTAGTGGTAAGGTTA 560
| ||||||||||||| | ||||| || | || || | |||||| || ||| ||||||
Sbjct 437 ATGATGATGTGAAGAGA-TGGATGGTAAAGA-GT-GTAGAGAAGGAGAGCGGTGAGGTTA 493
Query 561 TGGAAGA-GATCTTTGATGCTGTTGTTGTTGC-TACTGGTCATTACTCTCACCCTAGATT 618
||||||| | | |||||||||||||||||||| | |||| ||||||||| | ||||||||
Sbjct 494 TGGAAGAAG-TGTTTGATGCTGTTGTTGTTGCCT-CTGGCCATTACTCTTATCCTAGATT 551
Query 619 GCCCTCTATTAAAGGAATGGATTCT-TGGAAAAGGAAGCAAATTCATAGCCATGTTTACA 677
||| || || ||||||||||||| | ||||| ||||||||| ||||||||||| | || |
Sbjct 552 GCCTTCCATCAAAGGAATGGATT-TGTGGAAGAGGAAGCAACTTCATAGCCATATCTATA 610
Query 678 GGGTGCCTGATCCATTTCGTAATGAGGTGGTGGTGGTGGTTGGGAA-CTCAATGAGTGGA 736
| ||||||||||| |||||| ||||||| ||||| || ||||| | |||||||||||||
Sbjct 611 GAGTGCCTGATCCTTTTCGTGATGAGGTTGTGGTTGTCGTTGG-ATGCTCAATGAGTGGA 669
Query 737 CAAGACATATCAATGGAGCTTGTGGAAGTGGCAAAGGAAGTTCATTTAAGTGCCAAGA-C 795
|||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| | |
Sbjct 670 CAAGACATATCAATAGAGCTTGTGAAAGTGGCAAAGGAAGTTCATCTAAGTGCCAA-ATC 728
Query 796 ACTTGATATATCTTC-TGGCCTTT-CAAAAGTCATTTCCAAACACCCAAACCTTCTTATT 853
|||||| || || || |||| || | ||||||||| ||||| | ||| |||| | ||
Sbjct 729 ACTTGAGAT-TCCTCCTGGC-TTGACTAAAGTCATTGAAAAACATCAAAATCTTCATCTT 786
Query 854 CACCCACAGATTGAATCTTTAGAGGATGATGGGAAAG-TCATTTTTG-TGGATGGTTCTT 911
|| || || ||||||||| |||| || ||||| | | |||| || | || |||| ||||
Sbjct 787 CATCCTCAAATTGAATCTCTAGAAGAAGATGG-ACGGGTCATCTTCGATG-ATGGGTCTT 844
Query 912 GGGTCGTCGCTGATACAATTTTATATTGCACCGGGTACTCG-T-ACAAGTTTCCATTTCT 969
| | || || || || |||||||| || |||||||| | | | |||| || ||||||||
Sbjct 845 GTATTGTAGCCGACACTATTTTATACTGTACCGGGTA-T-GATTACAAATTGCCATTTCT 902
Query 970 TGAGAGTAAAGGAAGAATAGAAGTGGATGATGATAGAGTTGGTCCACTCTTCGAACACAC 1029
|||||| ||||||||| ||||| | |||||| |||||||||| |||||||||||||| ||
Sbjct 903 TGAGAGCAAAGGAAGAGTAGAAATTGATGATAATAGAGTTGGACCACTCTTCGAACATAC 962
Query 1030 TTTCCCTCCTTGTCTCTCCCCTTCTCTCTCCTTTGTCGGTATCCC-CAGAAAGTTGATAG 1088
|||| |||||| ||||||||||||||||||||||||||| ||||| | ||||||| || |
Sbjct 963 TTTCTCTCCTTATCTCTCCCCTTCTCTCTCCTTTGTCGGAATCCCTC-GAAAGTTAATTG 1021
Query 1089 GATTCCCATTCTTTGAAGCACAAGCAAAATGGATAGCACAAG-TTTTGTCAGG-AAAGTC 1146
| ||||||||||| ||| ||||||| ||||||||||| ||| |||||||||| ||| |
Sbjct 1022 GGTTCCCATTCTTCGAATCACAAGCGAAATGGATAGCG-AAGCTTTTGTCAGGCAAAA-C 1079
Query 1147 ATCTCTTCCTTC-TCCTGACCAAATGTTACAATCAGTAGAC-GAGTTTTACCGGTCAAGA 1204
|| ||||||||| || ||| |||||| | |||||| | | || || |||| || |||
Sbjct 1080 ATGTCTTCCTTCCTC-TGATCAAATGATGCAATCAATCT-CTGAATTCTACCTCTCCAGA 1137
Query 1205 GAT-CTAGCCGGAGTCCCTAAACACAACACTCACGACATTGCCGATTTCACGTATTGCGA 1263
|| || | |||| |||| |||| ||||||||||||||| |||||||||| ||| ||||
Sbjct 1138 GAAGCT-GACGGAATCCCAAAACGCAACACTCACGACATCGCCGATTTCAATTATAGCGA 1196
Query 1264 TAAGTACGCGGATTATGTTGGGTTTCCGCATTTAGAAGATTGGAGAAAGCTACTATGTTT 1323
||| ||||| ||||| |||| ||||| ||||||||||| ||||||||| | || ||| |
Sbjct 1197 TAAATACGCCGATTACATTGGATTTCCACATTTAGAAGAATGGAGAAAGGT-CT-TGTGT 1254
Query 1324 GTCT-G-CTCTCAAT-AATTCACAA-GAAAATCTTGAGACTTATCGCGATTCTTGGGATG 1379
|| | | || | | | ||||| || |||||||| ||||||||||| ||||||||||| |
Sbjct 1255 GTATCGGCTAT-AGTGAATTC-CATCGAAAATCTGGAGACTTATCGTGATTCTTGGGACG 1312
Query 1380 ATC-ATGAACTCCTACAAGAAGCTCTTCAA 1408
| | |||| || || |||||| ||||||||
Sbjct 1313 A-CGATGATCTTCTTCAAGAAACTCTTCAA 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59154150485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5