BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07810.1
Length=3702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940242 jgi|Araly1|940242|scaffold_600786.1 5616 0.0
> Ahg940242 jgi|Araly1|940242|scaffold_600786.1
Length=3625
Score = 5616 bits (3041), Expect = 0.0
Identities = 3430/3616 (95%), Gaps = 34/3616 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGTTTCCGAAGAGCAAAGGCGAAGAGACGAAGCG-ACTCGGTTAGCTTTTGCGGA 59
||||||||||||||||||||| |||| |||||||||||| || || ||||||||||||||
Sbjct 21 ATGGAGGTTTCCGAAGAGCAACGGCGGAGAGACGAAGCGAAC-CGATTAGCTTTTGCGGA 79
Query 60 GAAACGAAAGCA-GTCGTTCGATTCTTCGGAAAACCCACAGCGACAACAAGATTTCAGGT 118
|||||||||| | |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 80 GAAACGAAAG-ACGTCGTTTGATTCTTCAGAAAACCCACAGCGACAACAAGATTTCAGGT 138
Query 119 TAGCTAAATGTCGAAAGCTTGACGGTAGTAACGATGTGTGTCCTCAAGAAGGGTATCGGA 178
||||||||||||||||||| |||||| |||| ||||| ||| |||||||||||||||||
Sbjct 139 TAGCTAAATGTCGAAAGCTCGACGGTGGTAAAGATGTCTGTTTTCAAGAAGGGTATCGGA 198
Query 179 ACTACGAACCGGTACGAGTATTGAGTACTAGTGTGCCGGAAAAGTTTCGCGTCAGGCTCG 238
|||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 199 ACTACGAACCGGAACGAGGATTGAGTACTAGTGTACCGGAAAAGTTCCGCGTCAGGCTCG 258
Query 239 AGATCTGTTCTCCTGATTCGTTTTCGGTTACGCCGGTTCAATTGCAAGGGTTTCGATGCC 298
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 259 AGATCTGTTCTCCTGATTCGTTTTCGGTGACGCCGGTTCAATTGCAAGGGTTTCGATGCC 318
Query 299 CTGAAGAACAAGAGTGCCTTCGTCAATTGAGAAAGATTCTATCTGATGCGATTCCTTTAC 358
| ||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 319 CAGAAGAGCAAGAGTGTCTTCGTCAATTGAGAGAGATTCTATCTGAGGCGATTCCTTTAC 378
Query 359 ACTACACTCAAAATGATGATGGAGGAAAAGCTGGGGTTTATAAGATTAGAGACTACAATA 418
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 379 ACTACACTCAAAATGATGACGGAGGAAAAGCTGGGGTTTATAAGATTAGGGACTACAATA 438
Query 419 AGGTCTCTGGATGTCTTAAAAGGTCCAAGAGCGTTGAAGTTGAAGGGGTACCTTGGAAAA 478
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 439 TGGTCTCTGGATGTCTAAAAAGGTCCAAGAGCGTTGAAGTTGAAGAGATACCTTGGAAAA 498
Query 479 CGTTGGCTGTTGTTGAGAAACTTTCTCAGTCATAT-ATTTCCGGGAAATGGCAACCTTGT 537
||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||
Sbjct 499 CGTTGGCTGTTGTTGAGAAACTTTCCCAGTCAT-TCATTTCTGGGAAATGGCAACCTTGT 557
Query 538 TTACCTGAACATTATACGGAGGAGAAGGTTGAACAACTGATTGAAACCCTGCCAAGGAAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 558 ATACCTGAACATTATACGGAGGAGAAGGTTGAACAACTGATTGAAACCCTGCCAAGAAAA 617
Query 598 TTGGTGAATGCCCTTTTGCCTTTCCAACTTGATGGTCTAAGATTTGGTTTACGGAGAGGT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TTGGTGAATGCCCTTTTGCCTTTCCAACTTGATGGTCTAAGATTTGGTTTACGGAGAGGT 677
Query 658 GGCAGGTGTTTCATTGCTGATGAAATGGGGCTTGGAAAGACGCTTCAGGCCATCGCCATT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 678 GGCAGGTGTTTCATTGCTGATGAAATGGGGCTTGGAAAGACGCTTCAGGCCATTGCCATT 737
Query 718 GCCGGTTGCTTCATAAGTGAGGGTTCCATACTTGTTGTCTGTCCTGCTGTTTTGCGTTTC 777
|| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 738 GCTGGTTGCTTCATAAGTGAGGGTTCCATACTTGTTGTCTGTCCAGCTGTTCTGCGTTTC 797
Query 778 ACATGGGCAGAAGAATTGGAACGTTGGTTGCCATCTTGTTTGCCTTCTGACGTACATCTC 837
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 798 TCATGGGCAGAAGAATTGGAACGTTGGTTGCCATTTTGTTTGCCTTCTGACATACATCTC 857
Query 838 GTATTCGGTCATCAAGATAATCCTGCCTATTTACCAAGATGGCCAAAAGTTGTGGTTATC 897
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 GTTTTCGGTCATCAAGATAATCCTGCCTATTTACCAAGATGGCCAAAAGTTGTGGTTATC 917
Query 898 TCATACAAGATGCTTCAGCATCTCCGGACGACCATGCTAGAGCGAGAATGGGCCCTCTTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TCATACAAGATGCTTCAGCATCTCCGGACGACCATGCTAGAGCGAGAATGGGCCCTCTTG 977
Query 958 ATAGTAGATGAATCTCATCATCTACGATGTTCGAAAAAGAAGTCAGATCCACCTGAGATA 1017
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 978 ATAGTAGATGAATCTCATCATCTACGGTGTTCGAAAAAAAAGTCAGATCCACCTGAGATA 1037
Query 1018 AAGACAGTCCTTGATGTTGCTGAAAAGGTTAAGCACATAATTCTGTTGTCAGGAACTCCT 1077
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1038 AAGACAGTCCTTAATGTTGCTGAAAAGGTTAAGCACATAGTTCTGTTGTCAGGAACTCCT 1097
Query 1078 TCTGTATCGAGGCCCTTCGACATTTTCCATCAGATAAACATGCTATGGCCTGGTTTGCTG 1137
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1098 TCTATATCGAGGCCCTTCGACATTTTCCATCAGATAAACATCCTATGGCCTGGTTTGCTG 1157
Query 1138 GGAAAAGATAAGTATGAGTTTGCGAAAACCTATTGTGAAGTTGGGCTTGTCAGAGGTATC 1197
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GGAAAAGACAAGTATGAGTTTGCGAAAACCTATTGTGAAGTTGGGCTTGTCAGAGGTATG 1217
Query 1198 CAAGGGAAGATTTTCCAGGATTTTTCCAAGGGTACTCGCTTACTGGAGTTAAACATACTG 1257
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1218 CAAGGGAAGATTTTCCAGGATTTTTCAAAGGGTACTCGCTTACTGGAGTTAAACATACTG 1277
Query 1258 CTAAACCAAACAGTGATGATAAGAAGACTGAAGCAGCATTTGTTAACACAGTTACCCCCA 1317
|||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1278 CTAAACCAAACAGTGATGATAAGAAGACTGAAACAGCATGTGTTAACACAGCTACCCCCA 1337
Query 1318 AAACGTAGGCAAATCGTAACCATCTTGCTAAAGAAGTCTGATATAGCTTTAGCAATGGCT 1377
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1338 AAACGTAGGCAAATCGTAACCATCTTGCTAAAGAAGTCTGATATATCTTTAGCAATGTCT 1397
Query 1378 ATTGTC----A-G-----C-G-AGGCTAAGAAACAAAAGGATGGTGCTATAGCAGAAGTC 1425
|||||| | | | | ||||||| ||||||||||||||||||||||||||||||
Sbjct 1398 ATTGTCAGTGAGGCTAATCAGAAGGCTAATAAACAAAAGGATGGTGCTATAGCAGAAGTC 1457
Query 1426 ACAGAGAAGTCACATGAACCT---GACCAAAATGCTCGTGGATCAAATGAAGCTGGACAT 1482
|||||||| |||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 1458 ACAGAGAACTCACATGAACCTAAAGATCAAAATGCTCAAGGATCAAATGAAGCTGGACAT 1517
Query 1483 GTAAACGCAGAGAATTCTGATGGCCCTAACTCTGACAAAGAGAATCAACTATGTGGGAAA 1542
||||| ||||||||||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 1518 GTAAATGCAGAGAATTCTGATGGTCCGAACTCTGACAGAGAGAATCAACTATGTGGGAAA 1577
Query 1543 CTTTCCTATCAACAACTTGGCATTGCAAAGCTTTCTGCCTTTCGTGAATGGTTATCTCTA 1602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1578 CTTTCCTATCAACAACTTGGCATTGCAAAGCTTTCTGCCTTTCGTGAATGGTTATCCCTA 1637
Query 1603 CATCCACTTCTATCAGGATTGGATTATACCCCAGAAGAAATTGATGGAGACA-GAAGCTC 1661
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 1638 CATCCACTTCTATCAGGATTGGATTATACCCCAGAAGATATTGATGGAGACACG-AGCTC 1696
Query 1662 AACTAAAATGGTCGTTTTTGCACATCACCATAAGGTTCTGGATGGAATTCAGGAATTTAT 1721
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1697 AACTAAAATGGTCGTTTTTGCTCATCACCATAAGGTTCTGGATGGAATTCAGGAATTTAT 1756
Query 1722 ATGTGATAAAGGGATTGGTTTTGTTCGCATTGATGGGACGACATTGCCAAGAGATAGACA 1781
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1757 ATGTGATAAAGGGATTGGTTTTGTTCGCATTGATGGGACGACGTTGCCAAGAGATAGACA 1816
Query 1782 ATTGGCTGTACAGTCATTTCAGTTTTCTAGTGAGGTAAAAATTGCAATAATTGGTGTAGA 1841
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1817 ATTGGCTGTACAGTCATTTCAGTTTTCTAGTGAGGTAAAAGTTGCAATAATTGGCGTAGA 1876
Query 1842 AGCTGGAGGAGTTGGACTGGATTTTTCAGCAGCACAAAATGTTGTGTTCCTTGAATTGCC 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1877 AGCTGGAGGAGTTGGACTGGATTTTTCAGCAGCACAAAATGTTGTGTTCCTTGAATTACC 1936
Query 1902 TAAAACACCGTCTCTGTTGCTTCAGGCTGAGGATAGAGCACATAGGCGAGGCCAAACAAG 1961
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 TAAAACACCGTCACTGTTGCTTCAGGCTGAGGATAGAGCACATAGGCGAGGCCAAACAAG 1996
Query 1962 TGCAGTAAATGTATACATCTTCTGCGCGAAGGATACTATGGACGAGTCAAATTGGCAAAA 2021
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1997 TGCAGTCAATGTATACATCTTCTGCGCAAAGGATACTATGGACGAGTCAAATTGGCAAAA 2056
Query 2022 TCTAAACAAGAAGTTGCACCGTATTTCATCTACCACTGATGGAAAATATGATGGGAAGAC 2081
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 CCTGAACAAGAAGTTGCACCGTATTTCATCTACCACTGATGGAAAATATGATGGGAAGAC 2116
Query 2082 TGAAATCGAAATTGGAGGAGCATCTATTTTCAAGCCTGCTGAAGAAAGCAGTGAAAGAGA 2141
||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2117 CGAAATCGAAATTGAAAGAGCATATATTTTCAAGCCTGCTGAAGAAAGCAGTGAAAGAGA 2176
Query 2142 AGTTCTTGAAGGGCAACCATCAGAATCAAATACTGTAGTAGCTGATAAGATTGTTGAAAG 2201
||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 2177 AGTTCTTGAAGCACAACCATCAAAAGCTAATACTGTAGTAGCTGATAAGATTGTTGAAAG 2236
Query 2202 CTGTGACGATCCGGGAACTGAGACAGATGTGTCAAATACTATTGATCTCAAGGACGACAT 2261
||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2237 CTGTGACGATCTGGGATCTGAGACAGATGTATCAAATAGTATTGATCTCAAGGACGACAT 2296
Query 2262 GACTTCTCAAT-TGGAAATATTAGAAGTCTGTCCTTTTGTTGAGAATGGTTCCGGCTCTG 2320
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2297 GACTTCTCA-TCTGGAAATATTAGAAGTCTGTAAATTTGTTGAGAATGGTTCCGGCTCTG 2355
Query 2321 -GCATGAGGTCTTCTGGCACCATTTCTTTGACTATGTTAGCCCAGGAAAACCAAGAAAAT 2379
| ||||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 2356 AG-ATGAGATCTTCTGGCACCATTTGTTTAACTATGTTAGACCAGGAAAACCAAGAAAAT 2414
Query 2380 CATAAGCCTAAAAATCTTATTGCTGATGATGGGCTTGTGAAAGAAGTTGATTCCAGTTCC 2439
||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 2415 CATCAGCCTAAAAATCTTATTGCTGATGACGGGCTTGTGAAAGAATTTGATTCCAGTTCC 2474
Query 2440 ATTTTTCCACTCATAGATTCTCTGAGATTTGAGGTGAGCCAAAACACTGGAAGAATTCAT 2499
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2475 ATTTTTCCACTCATAGATTCTCTCAGATTTGAGGTGAGCCAAAACACTGGAAGAATTCAT 2534
Query 2500 TTATACTCTTGCATTCCTGGGAAAGATCCAAGACCAAGGCCTCATTTCCAAAACTTCCGT 2559
|||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2535 TTATACTCTTGCATTCTTGGGAAAGATCCACGACCAAGGCCTCATTTCCAGAACTTCCGC 2594
Query 2560 CCAGAGGAGATTGAAGCAAGCAATCCAAGTCAGGGTACCACGAAAGaaaaaaaTCCTGAA 2619
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 2595 CCAGAGGAGATTGAAGCAAGCAATACAAGTCAGGGTCCCAATAAAGAAAAAAATCCTGAA 2654
Query 2620 TCCATTACGGATGACCCGGTTCATGTACTTGCTATCTTAGAATTTATGAAAGAGTGGAAA 2679
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2655 TCCATTACAGATGATCCGGTTCATGTACTTGCTATCTTAGAATTTATGAAAGAGTGGAAA 2714
Query 2680 TCGCTACGGCCAATCGAAAAGCGGAAACTACTTGGAAAGCCTTTGCAACTACCTTTATCA 2739
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2715 TCACTACGGCCAATCGAAAAGCGGAAACTACTTGGAAAGCCTTTGCAACTACCTTTATCA 2774
Query 2740 CTGGAGTTGAGCTACCTGAGTGAAAGTACTAGTCACAACAGCGAGGGATTGCTTAGGGGA 2799
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2775 CTGGAGTTGAGCTACTTGAGTGAAAGTACTAGTCACAACAACGAGGGATTGCTTAGGGGA 2834
Query 2800 GGGAGCAAAAGACGAAACACACCGTTTTCTGAGATCAGCATTCCTTTACCTGAAAATGCA 2859
||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct 2835 GGGAGCAAAAGACGAAACACACCCTTTTCTGAGATCAGTATTCCTGTACCTGAAAATGCA 2894
Query 2860 GTGTGGATAAAGGTCAACCTTCGAAGTGGTCACCAAAGAAAGGAAAAAGAATACACCCAA 2919
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2895 GTGTGGAAAAAGGTCAACCTTCGAAGTGGCCACCAAAGAAAGGAAAAAGAATACACCCAA 2954
Query 2920 GCTTGGAGTATGAGCAACGAACCACTCTGTAAACTCTGTCAAAAGCCCTGCGCGGGATAC 2979
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 2955 GCTTGGAGTATGAGCAACGAACCACTCTGTAAACTCTGTCAAAAGCCCTGCAAGGGAAAC 3014
Query 2980 AACGCCAAAGAGCCTGAGTATTTAGAGGATCTTTTCTGTGAGCTTGCATGCTATGAAGAC 3039
||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 3015 AACGCCAAAGAACCTGAGTATTTTGAGGATCTTTTCTGTGATCTTGCATGCTATGAAGAT 3074
Query 3040 TACCGGACAAGAACAAGCAGCAGATACATTCGCCAGATAGAACATGGAATTTGCACAAAC 3099
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3075 TACCGGACGAGAACAAGCAGCAGATACATTCGCCAGATAGAACATGGAATTTGCACAAAC 3134
Query 3100 TGCAAATTAGACTGCCACCAACTTGTCAAACGGTTAAGGCCTTTACCACTGGAAAAACGA 3159
||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 3135 TGCGAATTAGACTGCCACCAACTTGTCAGACGGTTAAGGCCTTTACCATTGGAAAAACGC 3194
Query 3160 CGTACATACATAAACAAAGCTGCTCCAGAATTGTTTGCCCGGAAGAACTTGCTTGAAACC 3219
||||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||
Sbjct 3195 CGTACATACATAAACAAAGTTGCTCCAGAATTGTTTGCGCGGAAGAACCTGCTCGAAACC 3254
Query 3220 CTGGTTAATGATCCAACGGAGGGAAATGCATGGCATGCGGATCATATCATTCCAGTCTAC 3279
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3255 CTGGTTAATGATCCAACTGAGGGTAATGCTTGGCATGCGGATCATATCATTCCAGTCTAC 3314
Query 3280 CAAGGCGGAGGCGAGTGCCGGCTAGAGAACATGAGGACACTATGTGTGGCTTGCCATGCC 3339
||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 3315 CAAGGCGGAGGTGAATGCCGGCTAGAGAACATGAGGACACTTTGTGTGGCTTGTCATGCC 3374
Query 3340 GATGTCACTGCAGCTCAATGTGCAGAACGTAAACTGATACGGTCCAAAGCCAGGAAGCAA 3399
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 3375 AATGTCACTGCAGCTCAATGCGGAGAACGTAAACTGATACGGTCCAAAGCCAGGAAGCAA 3434
Query 3400 CTCAAAAACACTTTAAACGAACTCAGAAACAATCCGAAGCAAAAAGATCT-CTCGGCTGA 3458
||||||||||||||||||||||||||||||||||| ||||||| ||| || | |||||||
Sbjct 3435 CTCAAAAACACTTTAAACGAACTCAGAAACAATCCAAAGCAAACAGAACTGC-CGGCTGA 3493
Query 3459 CGAG-AACACAAAGGAGACTGATTCAGCTACCAATGAAGAGGAAGATGAACTAATGATTG 3517
| | ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 3494 AG-GCAACACAAAGGAGACTGATTCAGCTACCGATGAAGAGGAAGATGAGCTAATGGTTG 3552
Query 3518 AAGTTCCTGGTAGTGCCTACTCCATAGATCAGAAAATCAATCATGATGCCTCATAGAACT 3577
||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||
Sbjct 3553 AAGTTCCTGGTAGTGCCTACTCCATAGATCAGAAAATCAGTCATG---CCGCATAAAACT 3609
Query 3578 CATTTTTTGACTTGTC 3593
||||||||||||||||
Sbjct 3610 CATTTTTTGACTTGTC 3625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139861580775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5