BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07820.1
Length=2063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487613 jgi|Araly1|487613|fgenesh2_kg.6__747__AT5G07820.1 2647 0.0
Ahg496281 jgi|Araly1|496281|fgenesh2_kg.8__2097__AT5G61260.1 158 2e-37
> Ahg487613 jgi|Araly1|487613|fgenesh2_kg.6__747__AT5G07820.1
Length=1953
Score = 2647 bits (1433), Expect = 0.0
Identities = 1824/2002 (91%), Gaps = 70/2002 (3%)
Strand=Plus/Plus
Query 2 AGAAGAAAAAATTGTCAAAAGATTCTCTCCTTCCCTCTCTTTCGT-TCAATT-AAAGATT 59
|||| |||||| ||||||||||||||||||||||||||| ||| | |||||| |||||||
Sbjct 1 AGAAAAAAAAAATGTCAAAAGATTCTCTCCTTCCCTCTCCTTC-TCTCAATTAAAAGATT 59
Query 60 TGTTGACCTCATTTGTTTTTCTTCTAATCAAATCTAACTTTCTCCTTTTTCTTCTCAAAT 119
|||||||||||||||| ||||||| | || |||||||||||||||||||| ||||
Sbjct 60 TGTTGACCTCATTTGTGTTTCTTC---T--AA---AACTTTCTCCTTTTTCTTCTGAAAT 111
Query 120 TCTCTAATCACACTCTTCATCCTCTTCTGGACAAAACTATTTAGTATTTTGTTCTTCAGC 179
|||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 112 TCTCTAAT--CACTCTTCATCCTCTTCTGGGCAAAACTATATAGTATTTTGTTCTTCAGC 169
Query 180 TTCAGTTCTCTAAGAGttttttttttttttttGGGAAAATAATTAT-TGAAGAGTTGGGT 238
|||| ||||||||||| ||||||||||||| ||||||||| | | ||||||||| |
Sbjct 170 TTCAATTCTCTAAGAG-----TTTTTTTTTTTGGTAAAATAATTCTCT-AAGAGTTGGAT 223
Query 239 GATC--TAAAG-T-T-GTTGTAATAAGTTGCAATGTCTGAGGAGAATATTTCACAAGTTG 293
|||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GATCTATAAAGTTGTCGTTGTAATAAGTTGCAATGTCTGAGGAGAATATTTCACAAGTTG 283
Query 294 ATGACAAGTGTTGTTTGGATGATGCAAACCCAATGGAGATATCTGTGGAAACTATCCCTG 353
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||
Sbjct 284 ATGACAAGTGTTGTTTGGATGATGCAAACCCCATGGAGATCTCTGTTGAAACTATTCCTG 343
Query 354 TAGTGGATGAGGAAGTTCAAGGAGATGATGATGTTCTTCATCCAGCTGCAGAGACCAATC 413
|||||||||||||||||||| | || |||||||| ||| ||||||||||||||||||||
Sbjct 344 TAGTGGATGAGGAAGTTCAA-G-GA-GATGATGTAATTCTTCCAGCTGCAGAGACCAATC 400
Query 414 ATGCGAGTTTGAAGCGGTATTCAACACGAGTTTTAGATAAAAAGACAGGCAAAGCTCAGG 473
|||||| ||||| ||||| || ||| ||||||||||||||| ||||||||||
Sbjct 401 ATGCGAATTTGAGGCGGTGTT-----CGA----CAGATAAAAAGACAGGTAAAGCTCAGG 451
Query 474 TTCAAACCCGTTACCGTGGGAACCAAACGAGTTCTACTCATGATCTATGTAAACATGGGA 533
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 452 TTCAAACCCGTTACCGTGGGAACCAAACGAGTTCAACTCATGATCTATGTAAACATGGGA 511
Query 534 AGAGGCGTGAGGAAGATTTGGTGATCAAACCATGGAAGGTGGCTAAGAAAAAGAATGTTG 593
|||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| |||
Sbjct 512 AGAGGCGTGAGGAAGACTTGGTGATCAAACCGTGGAAGTTGGTTAAGAAAAAGAATATTG 571
Query 594 ACAGTGGAGATTTGGGGAAGGGTGAGACTTTGAGGAAGTCCTTGGGGAATGTTTCTAAAC 653
| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 572 AAAGTGGAGATTTGGGGAAAGGTGAGACTCTGAGGAAGTCCTTGGGAAATGTTTCTAAAC 631
Query 654 CGGACAAGTCATCATTGCAGGCTGCAAAGAGAGAAGCTGCTGGTGAGGTTGTCAAATCTT 713
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 CGGACAAGTCATTATTGCAGGCTGCAAAGAGAGAAGCTGCTGGTGAGGTTGTCAAATCTT 691
Query 714 GTGATGGTTTACACGTTAAGAAG-AGTGAAACCAAGAGTACTAGTCCGAGTGTTTCACCT 772
|||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 692 GTGATGGTTTACGCGTTAA-AAGAAGTGAAACCAAGAGTACTAGTCCAAGTGTTTCAGCT 750
Query 773 GTTGTGAGAACGGTCAAGAAGACTAATCTTGTTGTAAATAAGGCTTCAAGGATCAGCCAG 832
|||||||||| || ||||||||| |||||| ||| ||||| ||||| ||||||||||
Sbjct 751 GTTGTGAGAATGGCCAAGAAGACCGATCTTGATGT---TAAGGTTTCAAAGATCAGCCAG 807
Query 833 AACAA-AAGTCCTAAAGAGGATC---TTTCGAAGAATTTGAAGAACAAAGAGAAGGGGAA 888
||||| || |||| ||||| ||| |||| |||||||||||||| ||||||||| |||
Sbjct 808 AACAAGAA-TCCTGAAGAGAATCTTTTTTCAAAGAATTTGAAGAATAAAGAGAAGAAGAA 866
Query 889 GATTGTTGAACCGGTTAGATG---TGATGATGTATTAGAGAAGACAGATCTTGAAGTTAA 945
||| | ||||| ||||||||| ||||||||| || |||| |||| ||||||| |||||
Sbjct 867 GATCGATGAACTGGTTAGATGTACTGATGATGTTTTGGAGACGACAAATCTTGATGTTAA 926
Query 946 GAAGGTTTCAAGGATCAGTGAGAACAAGAGTTCTAA-AGAGGATACTCTGAAGAACAAAG 1004
|||||||||||||||||| |||||||||| |||||| | |||||| | ||| ||||||||
Sbjct 927 GAAGGTTTCAAGGATCAGCGAGAACAAGAATTCTAATA-AGGATATTTTGAGGAACAAAG 985
Query 1005 AGAAGGCGAAGATCGATGAGCCAGTTAGATGTGATGATGT-ATTGGAGAAAACGAGTCTT 1063
||||| ||||||| ||||| || ||||||||||||||| | ||||||||| || ||||||
Sbjct 986 AGAAGACGAAGATTGATGAACCGGTTAGATGTGATGAT-TCATTGGAGAAGACAAGTCTT 1044
Query 1064 GATGCTCAGAAGGTTTCAAGGATCAGCGAGAACAAGAATTCT-AAAGAGGAACGTTTAAA 1122
||| || |||||||| |||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 1045 GATCCTAAGAAGGTTCCAAGGATCAGCGAGAAGAAGAATT-TGAAAGAGGAACGTTTAAA 1103
Query 1123 GAATCTGAAGAACAAAGAGAAGACGAACATTGATGAACCGGTTAGACCTGATGATGCGGT 1182
|||||| |||||||||||||||||||||||||||||||| |||| | |||||||||| |
Sbjct 1104 GAATCTCAAGAACAAAGAGAAGACGAACATTGATGAACCAGTTATATCTGATGATGCATT 1163
Query 1183 GGAGAAGACATTGTATGTTGTTGAATCTAGTGTTGagaagaagaagaagaagaTGAGCAC 1242
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1164 GGAGAAGACATTGTATGTTGTTGAATCTAGTATT--G-AGAAGAAGAAGAAGATGAGCAT 1220
Query 1243 CAAAAGTGTTAAGATCAGTGAGACTCAGCAATCTTCTGAGAAGAAAATCATAAGAAGCAC 1302
||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1221 CAAAAGTGTTAAG---AGTGAGATTCAGCAATCTTCTGAGAAGAAAATCTTAAGAAGCAG 1277
Query 1303 CGGCAAGAAAAGTCTTAGCTTATTACCATCTTTG-CCTCCACCCTCAGAGGTGGTTACAG 1361
||| ||||||||||||||||||||||| |||||| || ||| ||| ||||||||||||
Sbjct 1278 CGGAAAGAAAAGTCTTAGCTTATTACCGTCTTTGTCC-CCATTCTCGGAGGTGGTTACAA 1336
Query 1362 GGTCAGATCCTAGGCCAATAAGACAGACTACTTCCAGGTCCAAGACTAGTTTGCCTGAGA 1421
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1337 GGTCAGATCCTAGGCCAATAAGACAGACTACTTCCAGGTCCAAGACTGGTTTGTCTGAGA 1396
Query 1422 AGAAACAGAGTGGTTCTGCTAATCTTGTTACTAATCCGAAACCCGAAAGCAAGATTAGAC 1481
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1397 AGGAACAGAGTGGTTCTGCAAATCTTGTTACTAATCCGAAACCCGAAAGCAAGATTAGGC 1456
Query 1482 CGAAA-AGGATTGGTTTAAAGGTTACTCCACCTCCTCCTCCAACAAAGCAGCAAATGAAT 1540
| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1457 C-AAAGAGGATTGGTTTAAAGGTTACTCCACCTCCTCCTCCAACGAAGCAGCAAATGAAT 1515
Query 1541 TTCAAGAAAGGGAAAGTTCTTGAACCAAAACCAGAAGATTCCACTACAACATCGATCAAA 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TTCAAGAAAGGGAAAGTTCTTGAACCAAAACCAGAAGATTCCACTACAACATCGATCAAA 1575
Query 1601 TTCAAGAAGATAGTTGTTCAAGAACCAAAACTCAGAACAAGTGATGTGAACAAAAAGAAG 1660
|||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1576 TTCAAGAAGAGAGTTGTTCAAGAACCAAAAGTCAG---AAGTGATGTGAACAAAAAGAAG 1632
Query 1661 AAGAGCCTGAAAGATAAAAGAGAAGGTGTTGGGAAGATTAACGGTGAAGGTAAACGAGAG 1720
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 AAGAACCTGAAAGACAAAAGAGAAGGTGTTGGGAAGATTAACGGTGAAGGTAAACGAGAG 1692
Query 1721 AAAGTTGTTCTGAGACACAGAAAAGTGGAAGTGAAGAAGAAATTGCAGACACTTTTCAAT 1780
|| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 AAGGTTGTTTTGAGGCATAGAAAAGTGGAAGTGAAGAAGAAATTGCAGACACTTTTCAAT 1752
Query 1781 AATGTGATTGAAGAGACTGTGAATAAGCTTGAAGAAGTGAGGAAAAGTAAAGTTAAAGCA 1840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1753 AATGTGATTGAAGAGACTGTGAATAAGCTTGAAGAAGTGAGGAAGAGTAAAGTTAAAGCA 1812
Query 1841 TTGGTTGGTGCTTTTGAAACTGTTATCTCTCTTCAAGATAACAACAGAACATCTCAGAAG 1900
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1813 TTGGTTGGTGCTTTTGAAACTGTAATCTCTCTTCAAGATAACAATAGAACATCTCAGAAG 1872
Query 1901 AAGAAGATTCAGAGCAAATCCACATCTTCACAAGTCGTTGAAGGCTGCTAAGTCCTTGAG 1960
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1873 AAGAAGATTAAGAGCAAATCCACATCTTCACAAGTCGTTGAAGGCTGCTA-GTCCTTGAG 1931
Query 1961 AAAGAGATCAAAGTTGTGAATT 1982
||||||||||||||||||||||
Sbjct 1932 AAAGAGATCAAAGTTGTGAATT 1953
Score = 165 bits (89), Expect = 1e-39
Identities = 169/205 (82%), Gaps = 16/205 (8%)
Strand=Plus/Plus
Query 993 TGAAGAACAAAGAGAAGGCGAAGATCGATGAGCCAGTTAGATG---TGATGATGTATTGG 1049
||||||| ||||||||| |||||||||||| | |||||||| ||||||||| ||||
Sbjct 845 TGAAGAATAAAGAGAAGAAGAAGATCGATGAACTGGTTAGATGTACTGATGATGTTTTGG 904
Query 1050 AGAAAACGAGTCTTGATGCTCAGAAGGTTTCAAGGATCAGCGAGAACAAGAATTCTAA-A 1108
||| || | |||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 905 AGACGACAAATCTTGATGTTAAGAAGGTTTCAAGGATCAGCGAGAACAAGAATTCTAATA 964
Query 1109 GAGGA-ACGTTTAAAGAATCTGAAGAACAAAGAGAAGACGAACATTGATGAACCGGTTAG 1167
|||| | ||| || | |||||||||||||||||| |||||||||||||||||
Sbjct 965 -AGGATAT-TTT---GA----G--GAACAAAGAGAAGACGAAGATTGATGAACCGGTTAG 1013
Query 1168 ACCTGATGATGCGGTGGAGAAGACA 1192
| ||||||| | |||||||||||
Sbjct 1014 ATGTGATGATTCATTGGAGAAGACA 1038
> Ahg496281 jgi|Araly1|496281|fgenesh2_kg.8__2097__AT5G61260.1
Length=1500
Score = 158 bits (85), Expect = 2e-37
Identities = 291/382 (76%), Gaps = 47/382 (12%)
Strand=Plus/Plus
Query 1536 TGAATTTCAAGAAAGGGAAA-GTTCTTGAACCAAAACCAGAAGATTCCACTAC-AACATC 1593
||| |||||||||| ||||| |||||||| || ||||| || ||||| || | || ||
Sbjct 1079 TGACTTTCAAGAAA-GGAAAGGTTCTTGAGCCGAAACCCGAGGATTCTTCTCCGAA-ATG 1136
Query 1594 GATCAAATTCAAG-AAGATAGTTGTTCAAGAAC-CAAAACTCAGAACAAGTGATGTGAAC 1651
|||||| ||| || |||| ||||| || |||| |||| | | | | || |||
Sbjct 1137 GATCAAGTTC-AGAAAGAGGGTTGTGCAGGAACTGAAAA--C-G--C-A---ATCCGAA- 1185
Query 1652 AAAAAGAAGAAGAGCCTGAAAGATAAAAGAGAAGGTGTTG-G--GAAGAT-T-A-AC-GG 1704
|||||||||| |||||||||| |||| ||||||| | ||| || | | | |
Sbjct 1186 GGGAAGAAGAAGAATCTGAAAGATAGAAGATTGGGTGTTGAGACGAA-ATCTGATTCTTG 1244
Query 1705 TGAA-G--GTAAACGAGAGAAAGTTGTTCTGAGACA-CAGAAAAGTGGAAGTGAAGAAGA 1760
|||| | ||||||| ||||||||||||||||| || | ||||||| |||| ||||||||
Sbjct 1245 TGAAGGAAGTAAACGTGAGAAAGTTGTTCTGAGGCATC-GAAAAGTAGAAGGGAAGAAGA 1303
Query 1761 AATTGCA-GACACTT-TTCAATAATGTGATTGAAGAGACTGTGAATAAGCTTGAA-GAA- 1816
|| || | ||| || ||||| ||||||||||| |||||||||||||||| | || ||
Sbjct 1304 AAATG-ATAACA-TTGTTCAACAATGTGATTGAGGAGACTGTGAATAAGC-T-AACAAAG 1359
Query 1817 GTGAGGAAAAG--TAAAGTTAAAGCAT-TGGTTGGTGCTTTTGAAACTGTTATCTCTCTT 1873
|||| | |||| ||||| ||||| | | |||||||||||||||||||||||||||||
Sbjct 1360 GTGA-G-AAAGCACAAAGTGAAAGC-TCTTATTGGTGCTTTTGAAACTGTTATCTCTCTT 1416
Query 1874 CAAGATAACAACAGAACATCTC 1895
|| || | | | ||| ||||||
Sbjct 1417 CAGGACA-CTA-AGA-CATCTC 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77589829065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5