BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07842.1
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487615 jgi|Araly1|487615|fgenesh2_kg.6__749__AT5G07840.1 728 0.0
> Ahg487615 jgi|Araly1|487615|fgenesh2_kg.6__749__AT5G07840.1
Length=724
Score = 728 bits (394), Expect = 0.0
Identities = 458/490 (93%), Gaps = 0/490 (0%)
Strand=Plus/Plus
Query 719 ATGCTCCAAGAGCAGCCGGTTGCGTTGTCCTTTCGGCCTAACTCATTTAGGCGCCGGTCC 778
||||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||||||
Sbjct 235 ATGCTCCAAGAGCAGCCAGTTGCATTGTCCTTCCGGCGTAACTCATTTAGACGCCGGTCC 294
Query 779 ATGGAAACGGGTGTTGACAGAGATGACAGGGGGTGGACTCAGCTTCACATCAAAGCTCGT 838
||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||| ||
Sbjct 295 ATGAAAACGGGTGTTGACAGAGACGATAGGGGCTGGACTCAGCTCCACATCAAAGCTTGT 354
Query 839 GAAGGCGATCTCAAAGCTGTTAAAGAGCTCCTTGACCAAGGAGCAGACGTGAACGCTCTA 898
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 355 AAAGGCGATCTCAAAGCTGTTAAAGAGCTCCTTGACCAAGGAGCTGACGTGAACGCTTTA 414
Query 899 GCTTGTGGACCTAAATCAAAAGGAATGACTCCTCTTCACCTTGCTGCCAAAGGAGGTCAC 958
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 415 GCGTGTGGACCTAAATCAAAAGGAATGACTCCTCTTCACCTTGCAGCCAAAGGAGGTCAC 474
Query 959 ATCGAAGTTATGGACTTGCTTCTTGAACGTGGAGCCAACATGGAAGCTAGAACCTCTGGT 1018
|| ||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||
Sbjct 475 ATTGAAGTCATGGACTTGCTTCTTGAACATGGAGCCAATATTGAAGCTAGAACCTCGGGT 534
Query 1019 GCTTGTGGCTGGACTCCTCTCCATGCTGCAGCTAAAGAACGGAAAAGAGAAGCTGTCAAG 1078
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 GCTTGTGGCTGGACTCCTCTCCATGCTGCAGCTAAAGAACGGAAGAGAGAAGCTGTCAAG 594
Query 1079 TTTCTTGTGGGGAACGGTGCTTTCTTACCTGATGATATAACCGACAGTAGGTTCAACCCG 1138
|||||||||| |||||| ||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 595 TTTCTTGTGGAGAACGGAGCTTTCTTACCCGATGATATAACCGACTGTAGATTCAACCCG 654
Query 1139 CCGGTTCAGTACTGTCACGGCTTGGAATGGGCTTATGAAGAGAGGAAGAAACTCAGTGAA 1198
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 655 CCGGTTCAGTACTGTCACGGCTTGGAATGGGCTTACGAGGAGAGGAAGAAACTCAGTGGA 714
Query 1199 GATACTTCTT 1208
|| |||||||
Sbjct 715 GAGACTTCTT 724
Score = 337 bits (182), Expect = 2e-91
Identities = 214/229 (93%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 272 TCTCTTTACCCATTGATCCAGGCTTTTTCTGATTTCTCTTTGTTCCTAGAAACCATTAAG 331
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 7 TCTCTTTACCCATTGATCCAGGCTTTTTCTGATTTCTCTTAGTTCCTAGAAACCATTAGG 66
Query 332 CTCCTACCTC-TTTCTAGTTGATGCTCGTGTTCTCTTCACTGTCTATGACTCCAGTTGTG 390
|||||| || |||| |||||||||| || |||||||||||||||||||||||| |||||
Sbjct 67 CTCCTA-TTCTTTTCAAGTTGATGCTTGTTTTCTCTTCACTGTCTATGACTCCAATTGTG 125
Query 391 ATCCCTCAAAATCTCCGTGTCTTTGGCCCTGGTTTGAATCCCTCTTTCCCTTACTGCATT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ATCCCTCAAAATCTCCGTGTCTTTGGCCCTGGTTTGAATCCCTCTTTCCCTTACTGCATT 185
Query 451 GCTAATCACTTCCCTTGATTG-AGTTGCTCCATTCCAACTGAATCATCT 498
||||||||| ||||||||| ||||||| |||| ||||||||||||||
Sbjct 186 TCTAATCACTCCCCTTGATTTTAGTTGCTTCATTTCAACTGAATCATCT 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51504060867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5