BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07850.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487616 jgi|Araly1|487616|fgenesh2_kg.6__750__AT5G07850.1 2176 0.0
Ahg487617 jgi|Araly1|487617|fgenesh2_kg.6__751__AT5G07870.1 826 0.0
Ahg948948 jgi|Araly1|948948|scaffold_800835.1 178 1e-43
> Ahg487616 jgi|Araly1|487616|fgenesh2_kg.6__750__AT5G07850.1
Length=1370
Score = 2176 bits (1178), Expect = 0.0
Identities = 1309/1373 (95%), Gaps = 6/1373 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTACTTCATCGGAAGTAAAAATCGTTTCTCAATGCTTTGTTAAACCCAAAACC 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCTCCTTCATCGGAAGTAAAAATCGTTTCTCAATGCTTTGTTAAACCCAAAACC 60
Query 61 ATCCCTGAAAAATGGAAAGAGCCATACCATTTATCACCGTTGGATCTTGTGATGCTCTCT 120
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 ATCCCCGAAAAATGGAAAGAGCCATACCATTTATCACCCTTGGATCTTGTGATGCTCTCT 120
Query 121 ATGCATTACCTCCAAAATGGTCTTCTCTTTCTCAAATCTGATGATGCAACCAAAACAAAA 180
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 ATGCATTATCTCCAAAATGGTCTTCTCTTTCTCAAATCTGATGATGCAATCAAAACAAAA 180
Query 181 GATTTCATGGAGACTTGGCTACAAAAGCTTAGAGATTCTCTAGCTGAAACCCTTGTCCAT 240
|||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||
Sbjct 181 GATTTCATGGAGACTTTGCTACAAAAGCTTAGAGATTCTATGGCTGTAACCCTTGTCCAT 240
Query 241 TTTTATCCGCTCGCGGGTCGTCTCTCGACTTTAAAAACCGATAATCCGAGATCCTACTCT 300
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 241 TTTTATCCGCTCGCGGGTCGTCTCTCCACTTTAAAAACCGACAATCCGAGATCCTACTCG 300
Query 301 GTGTTTGTGGATTGTAATGACAGTCCCGGAGCTGGATTTATCCATGCCAAATCGGATCTA 360
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 301 GTGTTTGTGGATTGTAATGACAGTCCCGGGGCTGGATTTATCCGTGCTAAATCGGATCTA 360
Query 361 AGTGTAAGAGATATTGTTGGA-TCCAACTATGTTCCTTTGGTTGTTCAATCTTTCTTTGA 419
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AGTGTAAGAGATATTGTT-GAGTCCAAATATGTTCCTTTGGTTGTTCAATCTTTCTTTGA 419
Query 420 CCACCATAAAGCCGTGAGCCATGATGGTCACACCATGAGTCTCTTCTCAGTCAAGGTAAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCACCATAAAGCCGTGAGCCATGATGGTCACACCATGAGTCTCTTCTCAGTCAAGGTAAC 479
Query 480 AGAATTGGTAGATGGAGTGTTCATTGGATTTTCATTGAATCACGCTGTGGGAGATGGAGG 539
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 480 AGAATTGGTAGATGGAGTGTTCATAGGATTGTCATTGAATCACGCTGTGGGAGATGGAGG 539
Query 540 TTCCTTGTGGCATTTTTTCAACTCTTTGTCGGAGATTTTCAATGCACAAGAAACCGATAA 599
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACATTATGGCATTTTTTCAACTCTTTGTCGGAGATTTTCAATGCACAAGAAACCGATAA 599
Query 600 CTTGCTTCTCAAGAATCCTCCAGTCCTTTCACGTTGGTTTCCTAAAGGGTACGGTCCTGT 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 CTTGCTTCTCAAGAATCCTCCAGTACTTTCACGTTGGTTTCCTAAAGGGTACGGTCCTGT 659
Query 660 GTACAACCTTCCTTTCACTCACTCTGATGAATTCATTAGCCGATTCGAATCACCGGTCTT 719
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 TTACAGCCTTCCTTTCACTCACTCTGATGAATTCATTGGCCGATTCGAATCACCGGTCTT 719
Query 720 GAAGGAGAGAATATTCCATTTCTCGTCTGAAACAATAACATCATTGAAATCAAAGGCTAA 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGGAGAGAATATTCCATTTCTCATCTGAAACAATAACATCATTGAAATCAAAGGCTAA 779
Query 780 TGAAGAAAGCAGAACAACAACAATTTCTTCTTTTCAAGCGTTAGCCGCATTTATGTGGAG 839
| ||||| ||||||||||||| ||||||||||||||||||||| | |||||||| |||||
Sbjct 780 TCAAGAATGCAGAACAACAACTATTTCTTCTTTTCAAGCGTTAACTGCATTTATATGGAG 839
Query 840 ATGCATTACAAGAGCAAGAAACTTACCTTATGATCATGAAATTCGTTGTAGCCTTGCCGC 899
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATGTATCACAAGAGCAAGAAAATTACCTTATGATCATGAAATTCGTTGTAGCCTTGCCGC 899
Query 900 TAACAATGGAACAAAATTGGATCCACCATTGTCTTTGAGCTATCTTGGTAATTGTCTTTC 959
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 900 TAACAATGGAACAAAATTGGATCCACCATTGCCTTTGAGCTATTTTGGTAATTGTATTTC 959
Query 960 TGCTGTAAAGTCCAAGACCGTTACATCCGGTGAGCTACTAGAAAATGATTTGGGATGGGC 1019
|||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 960 TGCTATAAAGTCGAAGACCGTTACATCCAGTGAGCTACTAGAAAATGATTTGGGATGGGC 1019
Query 1020 TGCTTTGAAAATGCATGAAGCTGTGATTGGAAACACTAGTGAAGTGGTCTCGGAGACAAT 1079
|||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1020 TGCTTTGAAAATGCATAAAGCTGTGATTGGAAACACTAGTGAAGAGGTCTCGGCGACAAT 1079
Query 1080 CAAAAACTGGTTGAAATCATCTTATGTTTTCCATTTAGAAAAACTTTTGGGAGCGATGGT 1139
| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1080 CGAAAATTGGATGAAATCATCTTATGTTTTCCATTTAGAAAAGCTTTTGGGAGCAATGGT 1139
Query 1140 GGTTCACATTGGAAGCTCTCCGAGGTTTAAGATGTATGAATGCGAGTTTGGGATGGGAAA 1199
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGTTCACATTGGAAGCTCGCCGAGGTTTAAGATGTATGAATGCGAGTTTGGGATGGGAAA 1199
Query 1200 AGCGGTTGCGGTTAGAAGCGGTTATGGCGGTAAGTTTGATGGGAAGATATCAGCATATGC 1259
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1200 AGCGGTTGCGGTTAGAAGCGGTTATGGGGGTAAGTTTGATGGGAAAATATCAGCTTATGC 1259
Query 1260 AGGAAGAGAAGGAGGAGGAACCATAGATTTGGAAGTATGTCTTCTTCCAGAGTTTATGGA 1319
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1260 AGGAAGAGAAGGAGGAGGAAGCATAGATTTGGAAGTATGTCTACTTCCAGAGTTTATGGA 1319
Query 1320 AGCTTTGGAATCAGATCAAGAATTCATGTC-CGTTGTC-TCTTCTTCTTCTTG 1370
|||||||||||||||| |||| || ||||| ||| | | ||||||||||||||
Sbjct 1320 AGCTTTGGAATCAGATGAAGAGTTTATGTCTCGT-G-CATCTTCTTCTTCTTG 1370
> Ahg487617 jgi|Araly1|487617|fgenesh2_kg.6__751__AT5G07870.1
Length=1472
Score = 826 bits (447), Expect = 0.0
Identities = 1116/1424 (78%), Gaps = 106/1424 (7%)
Strand=Plus/Plus
Query 1 ATGGATTCTACTTCATCGGAAGTAAAAATCGTTTCTCAATGCTTTGTTAAACCCAAAAC- 59
||||||||| ||||||| |||||||| || | ||| ||||||| || |||||||||||
Sbjct 63 ATGGATTCTTCTTCATCAGAAGTAAAGATTATCTCTAAATGCTTCGTCAAACCCAAAACT 122
Query 60 CATCCCTGAAAAATGGAAAGAGCCATACCATTTATCACCGTTGGATCTTGTGATGCTCTC 119
| |||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||
Sbjct 123 C-TCCCTGAAAAATGGAAAGAGCCTTACCATTTTTCACCATTGGATCATGTGATGCTCTC 181
Query 120 TATGCATTACCTCCAAAATGGTCTTCTCTTTCTC-AA--ATC------TG-A--TG---A 164
|| |||||| ||||||| |||||||| |||||| || ||| || | || |
Sbjct 182 AATCCATTACATCCAAAAAGGTCTTCTTTTTCTCAAACCATCATTTTGTGAATCTGACAA 241
Query 165 TGCAACCAAAACAAAAGATTTCATGGAGACTTGGCTACAAAAGCTTAGAGATTCTCTAGC 224
|| | ||| ||||||| ||||| ||||||| ||| | ||||||| ||| ||||||||
Sbjct 242 TGTAGTCAACCCAAAAGAGTTCATTGAGACTTTGCTGGAGAAGCTTAAAGACTCTCTAGC 301
Query 225 TGA-AACCCTTGTCCATTTTTATCCGCTCGCGGGTCGTCTCTCGACTTTAAAAACCGA-T 282
| | | ||||||||||| || ||||| || ||||||||||| ||||| ||| || |
Sbjct 302 -CATAGCACTTGTCCATTTCTACCCGCTTGCAGGTCGTCTCTCTACTTTGAAATCCAACG 360
Query 283 AATCCGAGATCCT-ACTCTGTGTTTGTGGATTGTAATGACAGTCCCGGAGCTGGATTTAT 341
| | | |||| || |||| ||||| |||||||||||| ||||||| || |||||||||||
Sbjct 361 ACT-CAAGAT-CTCACTCAGTGTTGGTGGATTGTAATAACAGTCCTGGTGCTGGATTTAT 418
Query 342 CCATGCCAAATCGGATCTAAGTGTAAGAGATATTGTTGGATCCAACTATGTTCCTTTGGT 401
|||||| | || ||||||||||| ||| ||| |||| ||||| ||||||||||||||
Sbjct 419 CCATGCTGAGTCAGATCTAAGTGTGTCAGACATTCTTGGGTCCAAATATGTTCCTTTGGT 478
Query 402 TGTTCAATCTTTCTTTGACCACCATAAAGCCGTGAGCCATGATGGTCACACCATGAGTCT 461
|||||||||||||||||| || || |||| ||| | ||||||| |||||||||||||
Sbjct 479 TGTTCAATCTTTCTTTGATCATCACAAAGTATTGAATCGTGATGGTGACACCATGAGTCT 538
Query 462 CTTCTCAGTCAAGGTAACAGAATTGGTAGATGGAGTGTTCATTGGATTTTC-ATTGAATC 520
| | ||||||||||||||||||||||| |||||||||||||| ||||| || || |||||
Sbjct 539 CCTATCAGTCAAGGTAACAGAATTGGTTGATGGAGTGTTCATAGGATTGTCTAT-GAATC 597
Query 521 ACGCTGTGGGAGATGGAGGTTCCTTGTGGCATTTTTTCAACTCTTTGTCGGAGATTTTCA 580
| || | ||||||||| ||||||| ||||| || |||||||||||||| || || ||||
Sbjct 598 ATTCTCTTGGAGATGGAAGTTCCTTCTGGCAGTTCTTCAACTCTTTGTCTGAAATCTTCA 657
Query 581 ATGCACAAGAA-A--CC---GATAA--C-TTGCT-T--CTCAAGAATCCTCCAGTCCTTT 628
|| |||||||| | || | ||| | ||||| | ||||||||||||||| || |||
Sbjct 658 ATTCACAAGAAGAAACCATTGGTAATGCATTGCTCTGTCTCAAGAATCCTCCAATC-TTT 716
Query 629 CACGTTGGTTTCCTAAAGGGTAC-GGTCCTGTGTACAACCTTCCTTTCACTCA-CTCTGA 686
| || | || | || | |||||| | |||| |||||| |||| | | | ||||
Sbjct 717 C--GT-G-------AA-GTGT-CTGGTCCTATTTACAGCCTTCCCTTCAGTGAAC-CTGA 763
Query 687 TGAATTCATTAGCCGATTC-GAATCACCGGTCTTGAAGGAGAGAATATTCCATTTCTCGT 745
||| | | |||| | || | ||| | ||||| ||||||||||| || ||||||||||| |
Sbjct 764 TGAGTCCCTTAGTCAAT-CAGAACCTCCGGTTTTGAAGGAGAGGATGTTCCATTTCTCAT 822
Query 746 CTGAAACAATAACATCATTGAAATCAAAGGCTAATGAAGAAAGCAGAACAACAACA-ATT 804
| |||||| | | |||| |||| |||||||| ||| ||||| || ||||||||| | ||
Sbjct 823 CAGAAACAGTGAGATCACTGAAGTCAAAGGCGAATCAAGAATGCGGAACAACAA-AGATC 881
Query 805 TCTTCTT-TTCAAG-CGTTAGCCGCATTTATGTGGAGATGCATTACAAGAGCAAGAAA-C 861
|||| | |||| | | ||| |||||||||| |||||| ||||||||||||||||||| |
Sbjct 882 TCTT-TGCTTCA-GTCCTTAACCGCATTTATATGGAGAAGCATTACAAGAGCAAGAAAAC 939
Query 862 TTACCTTATGATCATGAAATT-CGTTGTAGCCTTGCCGCTAACAATGGAACAA-AATTGG 919
| ||| ||||||| |||| | | ||| || ||||| ||| |||| || ||| ||| |
Sbjct 940 T-ACCAAATGATCAAGAAACTAC-TTGCAGGCTTGCTGCTGGCAATAGATCAAGAAT-GA 996
Query 920 ATCCACCATTGTCTTTGAG-CTATCTT-GGTAATT--GTCTTTCT-GCTGTAAAGTCCAA 974
| ||||||||| | || | | ||| || || |||| ||| | || |||| | ||
Sbjct 997 ACCCACCATTGCCAAAGAATC-A-CTTTGGGGTTTACGTCTCTCTTG-TG-AAAG-C-AA 1050
Query 975 G-ACCGTTACATCCGGTGAGCTACTAGAAAATGA-TTTGGGATGGGCTGCTTTGAAAATG 1032
|| | || || ||| | ||||| || ||||| |||| |||||||||||||||| ||
Sbjct 1051 CTAC-GATA-ATT-GGTAATCTACTGGAGAATGAGTTTGA-ATGGGCTGCTTTGAAACTG 1106
Query 1033 CATGAAGCTGTGATTGGAA-ACACTAGTGAAGTGGTCTCGGA-GACAATCAAA--AACTG 1088
||| ||||||| | | || |||| ||||| | |||| | || | | | | || ||
Sbjct 1107 CATCAAGCTGTAACCG-AACACACGGGTGAAAAGATCTCTTACGA-AGT-AGATCAA-TG 1162
Query 1089 GTTGAAATCATC-TT-ATGTTTTCCATTTAGAAAAACTTT----TGGGAGCGATGGTGGT 1142
|||||| || || || | ||| | | | | | ||||| | || | || || |
Sbjct 1163 GTTGAAGTC-TCCTTTACCTTTGCAAGT-ATATCGACTTTCCAATTTGAAC-AT--TG-T 1216
Query 1143 TCACATTGGAAGCTCTCCGAGGTTTAAGATGTATGAATGCGAGTTTGGGATGGGAAAAGC 1202
||| || |||||||||||||||||||| | ||| | |||||||||||||||||| |||||
Sbjct 1217 TCATATGGGAAGCTCTCCGAGGTTTAACAAGTACGGATGCGAGTTTGGGATGGGGAAAGC 1276
Query 1203 GGTTGCGGTTAGAAGCGGTTATGGCGGTAAGTTTGATGGGAAGATATCAGCATATGCAGG 1262
||| |||||||||||||||||||| ||||||| ||| |||||| ||||||| ||| ||||
Sbjct 1277 GGTGGCGGTTAGAAGCGGTTATGGAGGTAAGTATGACGGGAAGGTATCAGCTTATCCAGG 1336
Query 1263 AAGAGAAGGAGGAGGAACCATAGATTTGGAAGTATGTCTTCTTCCAGAGTTTATGGAAGC 1322
|||||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1337 AAGAGAAGGAGGAGCAAGCATAGATTTGGAAGTATGTCTACTTCCAGAGTCTATGGAAGC 1396
Query 1323 TTTGGAATCAGATCAAGAATTCATGTC-CGTTGTCTCTTCTTCT 1365
|||||||||||||||||| ||||| || | ||| ||||||||||
Sbjct 1397 TTTGGAATCAGATCAAGAGTTCATATCTC-TTGCCTCTTCTTCT 1439
> Ahg948948 jgi|Araly1|948948|scaffold_800835.1
Length=1367
Score = 178 bits (96), Expect = 1e-43
Identities = 179/218 (82%), Gaps = 9/218 (4%)
Strand=Plus/Plus
Query 1150 GGAAGCTCTCCGAGGTTTAAGATGTATGAATGCGAGTTTGGGATGGGAAAAGCG-GTTG- 1207
|||||||| ||||||||||| | ||||| || || |||||||||||||||| | | ||
Sbjct 1131 GGAAGCTCACCGAGGTTTAACAAGTATGGTTGTGAATTTGGGATGGGAAAAG-GAG-TGA 1188
Query 1208 CGGTTAGAAGCGGTTATGGCG-GTAAGTTTGATGGGAAGATATCAGCATATGCAGGAAGA 1266
| | ||||| || || ||| |||||||||||| ||| |||| || || | ||||||
Sbjct 1189 CACTAAGAAGTGGCTA-CGCGCATAAGTTTGATGGAAAGGTATCTGCTTACCCGGGAAGA 1247
Query 1267 GAAGGAGGAGGAACCATAGATTTGGAAGTATGTCTTCTTCCAGAGTTTATGGAAGCTTTG 1326
|||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1248 GAAGGAGGGGGAAGTATAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTG 1307
Query 1327 GAATCAGATCAAGAATTCATGTC-CGTTGTCTCTTCTT 1363
||||||||| |||| || ||||| | |||| ||| |||
Sbjct 1308 GAATCAGATGAAGAGTTTATGTCAC-TTGTTTCT-CTT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5