BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07870.1 Length=1532 Score E Sequences producing significant alignments: (Bits) Value Ahg487617 jgi|Araly1|487617|fgenesh2_kg.6__751__AT5G07870.1 1978 0.0 Ahg487616 jgi|Araly1|487616|fgenesh2_kg.6__750__AT5G07850.1 494 1e-138 Ahg948948 jgi|Araly1|948948|scaffold_800835.1 279 3e-74 > Ahg487617 jgi|Araly1|487617|fgenesh2_kg.6__751__AT5G07870.1 Length=1472 Score = 1978 bits (1071), Expect = 0.0 Identities = 1364/1500 (91%), Gaps = 42/1500 (3%) Strand=Plus/Plus Query 7 CAAAGAAACATTGAAAGACACAAAAG-AGTCATATTATACACAttttttttCTTCTTGGa 65 |||||||||||||||||| ||||||| || |||||||||||| |||||||| ||||| | Sbjct 1 CAAAGAAACATTGAAAGAAACAAAAGAAG-CATATTATACACTTTTTTTTTTTTCTT-G- 57 Query 66 aaaaaaTGGATTCTTCTTCATCTGAAGTAAGGATAATCTCAAAATGCTTCGTCAAACCCA 125 |||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||| Sbjct 58 AAAACATGGATTCTTCTTCATCAGAAGTAAAGATTATCTCTAAATGCTTCGTCAAACCCA 117 Query 126 AAAC-CATCCCTCAAAAATGGAAAGAACCTTACCATTTTTCACCAACGGATCATATAATG 184 |||| | ||||| ||||||||||||| |||||||||||||||||| ||||||| | ||| Sbjct 118 AAACTC-TCCCTGAAAAATGGAAAGAGCCTTACCATTTTTCACCATTGGATCATGTGATG 176 Query 185 CTCTCAATCCATTACATCCAAAAGGGTCTTCTTTTTCTCAAACCATCA--TT-T---TCT 238 ||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| Sbjct 177 CTCTCAATCCATTACATCCAAAAAGGTCTTCTTTTTCTCAAACCATCATTTTGTGAATCT 236 Query 239 G--AATCT-GTCAAACCAAAAGAGTTCATGGAGACTTTGCTGCAGAAGCTTAAAGACTCA 295 | ||| | ||||| |||||||||||||| |||||||||||| |||||||||||||||| Sbjct 237 GACAATGTAGTCAACCCAAAAGAGTTCATTGAGACTTTGCTGGAGAAGCTTAAAGACTCT 296 Query 296 CTAGCCATAGCACTTGTCCATTTCTATCCTCTTGCAGGTCGTCTCTCTACTTTGAAAACC 355 |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || Sbjct 297 CTAGCCATAGCACTTGTCCATTTCTACCCGCTTGCAGGTCGTCTCTCTACTTTGAAATCC 356 Query 356 GACAATTCAAGATCTCACTCTGTGTTTGTGGATTGTAATAATAGTCCTGGTGCTAGATTT 415 || | |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||| Sbjct 357 AACGACTCAAGATCTCACTCAGTGTTGGTGGATTGTAATAACAGTCCTGGTGCTGGATTT 416 Query 416 ATCCATGCTGAATCAGATCTAAGTGTGTCAGACATTCTTGGATCCACATATGTTCCTTTG 475 ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 417 ATCCATGCTGAGTCAGATCTAAGTGTGTCAGACATTCTTGGGTCCAAATATGTTCCTTTG 476 Query 476 GTTGTTCAATCTCTCTTTGATCATCACAAAGCATTGAATCGTGATGGTTACACCATGAGT 535 |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 477 GTTGTTCAATCTTTCTTTGATCATCACAAAGTATTGAATCGTGATGGTGACACCATGAGT 536 Query 536 CTCTTATCAATCAAGGTAACAGAACTGGTAGATGGAGTGTTCATAGGATTGTCTATGAAT 595 ||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 537 CTCCTATCAGTCAAGGTAACAGAATTGGTTGATGGAGTGTTCATAGGATTGTCTATGAAT 596 Query 596 CATTCCCTTGGAGATGGAAGTTCCTTCTGGCAGTTCTTCAACTCTTTGTCTGAGATCTTC 655 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 597 CATTCTCTTGGAGATGGAAGTTCCTTCTGGCAGTTCTTCAACTCTTTGTCTGAAATCTTC 656 Query 656 AATTCACAAGAAGAAACCATTGGGAATaacaacaacaacaacaacaacGCATTGCTCTGT 715 ||||||||||||||||||||| || | || |||||||||||| Sbjct 657 AATTCACAAGAAGAAACCATT-GG--T------------------AATGCATTGCTCTGT 695 Query 716 CTCAAGAATCCTCCAATCATTCGTGAAGCGACCGGTCCTATGTACAGCCTTCCCTTTAGT 775 |||||||||||||||||| ||||||||| | | |||||||| |||||||||||||| ||| Sbjct 696 CTCAAGAATCCTCCAATCTTTCGTGAAGTGTCTGGTCCTATTTACAGCCTTCCCTTCAGT 755 Query 776 GAACCTAATGAGTCCCTTAGTCAATCCGAACCTCCGGTTTTGAAGGAGAGGATGTTCCAT 835 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 756 GAACCTGATGAGTCCCTTAGTCAATCAGAACCTCCGGTTTTGAAGGAGAGGATGTTCCAT 815 Query 836 TTCTCATCAGAAACAGTGAGATCGCTGAAATCAAAGGCGAATCAAGAATGCGGAACAACA 895 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 816 TTCTCATCAGAAACAGTGAGATCACTGAAGTCAAAGGCGAATCAAGAATGCGGAACAACA 875 Query 896 ATGATCTCTTCT-TTTCAG-GCTCTGACCGCATTGATATGGAGAAGCATTACAAGAGCAA 953 | |||||||| | ||||| || | |||||||| ||||||||||||||||||||||||| Sbjct 876 AAGATCTCTT-TGCTTCAGTCCT-TAACCGCATTTATATGGAGAAGCATTACAAGAGCAA 933 Query 954 GAAAACTACCAAATGATCAAGAAACTACTTGCAGGTTTGCTGCTGGAAACAGATCAAGAA 1013 ||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 934 GAAAACTACCAAATGATCAAGAAACTACTTGCAGGCTTGCTGCTGGCAATAGATCAAGAA 993 Query 1014 TGAATCCACCATTGCCGACGAATCAATTTGGAGTTTACATCTCTCTTGTGAAAACGACTA 1073 |||| ||||||||||| | |||||| ||||| |||||| |||||||||||||| | |||| Sbjct 994 TGAACCCACCATTGCCAAAGAATCACTTTGGGGTTTACGTCTCTCTTGTGAAAGCAACTA 1053 Query 1074 CTAAAATCGGTAATCTACTGGAGAATGAGTTTGGATGGATTGCTTTGAAACTGCATCAAG 1133 | | ||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 1054 CGATAATTGGTAATCTACTGGAGAATGAGTTTGAATGGGCTGCTTTGAAACTGCATCAAG 1113 Query 1134 CTGTTACCGAACACACTGGCGAAAAGATCTCTTACGAAATAGATCAAATG-TTGAAGTCT 1192 |||| ||||||||||| || |||||||||||||||||| |||||||| || ||||||||| Sbjct 1114 CTGTAACCGAACACACGGGTGAAAAGATCTCTTACGAAGTAGATCAA-TGGTTGAAGTCT 1172 Query 1193 CCTTTACCGTTGCAAGCATATCGACTTTCCAATTTGAACATAGTTCACATGGGAAGTTCT 1252 |||||||| ||||||| |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 1173 CCTTTACCTTTGCAAGTATATCGACTTTCCAATTTGAACATTGTTCATATGGGAAGCTCT 1232 Query 1253 CCAAGGTTTAACAAGTACGGAAGCGAGTTTGGGATGGGGAAAGCGGTGGCGGTTAGAAGC 1312 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1233 CCGAGGTTTAACAAGTACGGATGCGAGTTTGGGATGGGGAAAGCGGTGGCGGTTAGAAGC 1292 Query 1313 GGTTATGGCGGTAAGTATGACGGGAAGGTATCAGCTTATCCAGGAAGACAAGGAGGAGCA 1372 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1293 GGTTATGGAGGTAAGTATGACGGGAAGGTATCAGCTTATCCAGGAAGAGAAGGAGGAGCA 1352 Query 1373 AGTATAGATTTGGAAGTATGTCTACTTCCAGAGTTTATGGAAGCTTTGGAATCAGATCAA 1432 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1353 AGCATAGATTTGGAAGTATGTCTACTTCCAGAGTCTATGGAAGCTTTGGAATCAGATCAA 1412 Query 1433 GAGTTCATGTCTCTTGTCTCTTCTTCCACCTGATCCTATTCATATTTTCCAGACACAAAA 1492 |||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1413 GAGTTCATATCTCTTGCCTCTTCTTCTACCTGATCCTATTCATAATTTCCAGACACAAAA 1472 > Ahg487616 jgi|Araly1|487616|fgenesh2_kg.6__750__AT5G07850.1 Length=1370 Score = 494 bits (267), Expect = 1e-138 Identities = 497/606 (82%), Gaps = 24/606 (4%) Strand=Plus/Plus Query 71 ATGGATTCTTCTTCATCTGAAGTAAGGATAATCTCAAAATGCTTCGTCAAACCCAAAACC 130 ||||||||| ||||||| ||||||| || | || ||||||| || |||||||||||| Sbjct 1 ATGGATTCTCCTTCATCGGAAGTAAAAATCGTTTCTCAATGCTTTGTTAAACCCAAAACC 60 Query 131 ATCCCTC-AAAAATGGAAAGAACCTTACCATTTTTCACCAACGGATCATATAATGCTCTC 189 ||||| | ||||||||||||| || |||||||| ||||| ||||| | | |||||||| Sbjct 61 ATCCC-CGAAAAATGGAAAGAGCCATACCATTTATCACCCTTGGATCTTGTGATGCTCTC 119 Query 190 AATCCATTA-CATCCAAAAGGGTCTTCTTTTTCTCAAACCATCATTTTCTGAAT-CTGTC 247 || ||||| | ||||||| |||||||| |||||| || ||| | || || | || Sbjct 120 TATGCATTATC-TCCAAAATGGTCTTCTCTTTCTC-AA--ATC---TGATG-ATGCAATC 171 Query 248 AAACCAAAAGAGTTCATGGAGACTTTGCTGCAGAAGCTTAAAGACTC-ACTAGCCATAGC 306 ||| ||||||| ||||||||||||||||| || ||||||| ||| || | | || || | Sbjct 172 AAAACAAAAGATTTCATGGAGACTTTGCTACAAAAGCTTAGAGATTCTA-TGGCTGTAAC 230 Query 307 ACTTGTCCATTTCTATCCTCTTGCAGGTCGTCTCTCTACTTTGAAAACCGACAATTCAAG 366 ||||||||||| ||||| || || ||||||||||| ||||| |||||||||||| | || Sbjct 231 CCTTGTCCATTTTTATCCGCTCGCGGGTCGTCTCTCCACTTTAAAAACCGACAATCCGAG 290 Query 367 AT-CTCACTCTGTGTTTGTGGATTGTAATAATAGTCCTGGTGCTAGATTTATCCATGCTG 425 || || |||| |||||||||||||||||| | ||||| || ||| ||||||||| |||| Sbjct 291 ATCCT-ACTCGGTGTTTGTGGATTGTAATGACAGTCCCGGGGCTGGATTTATCCGTGCTA 349 Query 426 AATCAGATCTAAGTGTGTCAGACATTCTTGGA-TCCACATATGTTCCTTTGGTTGTTCAA 484 |||| ||||||||||| ||| ||| || || |||| |||||||||||||||||||||| Sbjct 350 AATCGGATCTAAGTGTAAGAGATATTGTT-GAGTCCAAATATGTTCCTTTGGTTGTTCAA 408 Query 485 TCTCTCTTTGATCATCACAAAGCATTGAATCGTGATGGTTACACCATGAGTCTCTTATCA 544 ||| ||||||| || || ||||| ||| | ||||||| |||||||||||||||| ||| Sbjct 409 TCTTTCTTTGACCACCATAAAGCCGTGAGCCATGATGGTCACACCATGAGTCTCTTCTCA 468 Query 545 ATCAAGGTAACAGAACTGGTAGATGGAGTGTTCATAGGATTGTCTAT-GAATCATTCCCT 603 |||||||||||||| |||||||||||||||||||||||||||| || |||||| | || Sbjct 469 GTCAAGGTAACAGAATTGGTAGATGGAGTGTTCATAGGATTGTC-ATTGAATCA--CGCT 525 Query 604 -TGG-AGATGGAAGTTCCTTCTGGCAGTTCTTCAACTCTTTGTCTGAGATCTTCAATTCA 661 ||| ||||||| || | || ||||| || |||||||||||||| ||||| |||||| || Sbjct 526 GTGGGAGATGGAGGTACATTATGGCATTTTTTCAACTCTTTGTCGGAGATTTTCAATGCA 585 Query 662 CAAGAA 667 |||||| Sbjct 586 CAAGAA 591 Score = 374 bits (202), Expect = 1e-102 Identities = 570/740 (77%), Gaps = 55/740 (7%) Strand=Plus/Plus Query 748 CGGTCCTATGTACAGCCTTCCCTTT-AGTGAAC-CTAATGAGTCCCTTAGTCAATCCGAA 805 ||||||| | ||||||||| ||||| | | || || |||| | | || | | || |||| Sbjct 651 CGGTCCTGTTTACAGCCTT-CCTTTCACT-CACTCTGATGAATTCATTGGCCGATTCGAA 708 Query 806 CCTCCGGTTTTGAAGGAGAGGATGTTCCATTTCTCATCAGAAACAGTGAGATCGCTGAAA 865 | ||||| ||||||||||| || |||||||||||||| |||||| | | ||| ||||| Sbjct 709 TCACCGGTCTTGAAGGAGAGAATATTCCATTTCTCATCTGAAACAATAACATCATTGAAA 768 Query 866 TCAAAGGCGAATCAAGAATGCGGAACAACAA-TGATCTCTTCTTTTCAGGC-TCTGACCG 923 |||||||| |||||||||||| ||||||||| | || ||||||||||| || | | || | Sbjct 769 TCAAAGGCTAATCAAGAATGCAGAACAACAACT-ATTTCTTCTTTTCAAGCGT-TAACTG 826 Query 924 CATTGATATGGAGAAGCATTACAAGAGCAAGAAAACTACCAAATGATCAAGAAACTAC-T 982 |||| ||||||||| | || ||||||||||||||| |||| ||||||| |||| | | | Sbjct 827 CATTTATATGGAGATGTATCACAAGAGCAAGAAAATTACCTTATGATCATGAAA-TTCGT 885 Query 983 TGCAGGTTTGCTGCTGGA-AACAGATCAAGAA-TGAATCCACCATTGCCGACGAATC-AA 1039 || || |||| ||| | || || ||| || || ||||||||||||| | | | | Sbjct 886 TGTAGCCTTGCCGCT-AACAATGGAACAA-AATTGGATCCACCATTGCCTTTG-AGCTAT 942 Query 1040 TTTGG-AGTTTACATCTCT-CTTGTGAAA-ACGACTA-C-TAAAAT-CGGTAATCTACTG 1093 ||||| | || || ||| | | | ||| ||| | | | | || | || | ||||| Sbjct 943 TTTGGTA-ATTGTATTTCTGC-TAT-AAAGTCGAAGACCGTTACATCCAGTGAGCTACTA 999 Query 1094 GAGAATGAGTTT-GGATGGATTGCTTTGAAACTGCATCAAGCTGTTA-CCGAACACACTG 1151 || ||||| ||| |||||| |||||||||| ||||| ||||||| | ||| ||||| Sbjct 1000 GAAAATGA-TTTGGGATGGGCTGCTTTGAAAATGCATAAAGCTGTGATTGGAA-ACACTA 1057 Query 1152 GCGAAAAGATCTCTTACGA-AATAGATCAAA-T-GTTGAAGTC-TCCTTTACCG-TTGCA 1206 | ||| || |||| ||| ||| || ||| | | |||| || | | ||| | || | Sbjct 1058 GTGAAGAGGTCTC-GGCGACAATCGA--AAATTGGATGAAATCAT-C-TTA-TGTTTTC- 1110 Query 1207 AGCATATCGACTTTCCAATTT--GAAC-A---TAGTTCACATGGGAAGTTCTCCAAGGTT 1260 ||| | || | ||| || | | | |||||||| ||||| || || ||||| Sbjct 1111 --CATTTAGA-AAAGC-TTTTGGGAGCAATGGTGGTTCACATTGGAAGCTCGCCGAGGTT 1166 Query 1261 TAACAAGTACGGAA-GCGAGTTTGGGATGGGGAAAGCGGTGGCGGTTAGAAGCGGTTATG 1319 ||| | ||| ||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1167 TAAGATGTA-TGAATGCGAGTTTGGGATGGGAAAAGCGGTTGCGGTTAGAAGCGGTTATG 1225 Query 1320 GCGGTAAGTATGACGGGAAGGTATCAGCTTATCCAGGAAGACAAGGAGGAGCAAGTATAG 1379 | ||||||| ||| ||||| ||||||||||| |||||||| ||||||||| ||| |||| Sbjct 1226 GGGGTAAGTTTGATGGGAAAATATCAGCTTATGCAGGAAGAGAAGGAGGAGGAAGCATAG 1285 Query 1380 ATTTGGAAGTATGTCTACTTCCAGAGTTTATGGAAGCTTTGGAATCAGATCAAGAGTTCA 1439 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 1286 ATTTGGAAGTATGTCTACTTCCAGAGTTTATGGAAGCTTTGGAATCAGATGAAGAGTTTA 1345 Query 1440 TGTCTCTTGTC-TCTTCTTC 1458 |||||| || | |||||||| Sbjct 1346 TGTCTCGTG-CATCTTCTTC 1364 > Ahg948948 jgi|Araly1|948948|scaffold_800835.1 Length=1367 Score = 279 bits (151), Expect = 3e-74 Identities = 513/681 (75%), Gaps = 51/681 (7%) Strand=Plus/Plus Query 802 CGAACCTCCGGTTTTGAAGGAGAGGATGTTCCATTTCTCATCAGAAA-CAGTGAGATCGC 860 |||| |||| ||| | ||||| || |||||| |||||||||||||| || | |||| || Sbjct 689 CGAATCTCCAGTTCTCAAGGAAAGAATGTTCTGTTTCTCATCAGAAACCA-TAAGATTGC 747 Query 861 TGAAATCAAAGG-CGAATCAAGA-ATGCGGAACAACAAT-GATCTCTTCTTTTCAGGCTC 917 | ||| |||||| | || ||| | ||||||||| || | || || ||||| ||| | | Sbjct 748 TTAAAGCAAAGGTC-AACCAA-ATATGCGGAACTAC-CTCCATTTCATCTTTCCAGTCGC 804 Query 918 TGACCGC-ATTGATATGGAGAAGCATTACAAGAGCAAGAAAACTACCAAAT-GATCAAGA 975 | ||||| || ||||||||| |||| ||||| ||| | | | |||| | || | ||| Sbjct 805 TAACCGCGGTT-ATATGGAGATGCATAACAAGGGCACGGAGATTACC-CCTCGACCGAGA 862 Query 976 AACTACTTGCAGGTTTGCTGCTGGA-AACAGATCAAGAATGAATCCACC-ATTGC-CGAC 1032 ||| | ||| || |||||||| || |||||| ||||||| ||||||| || | | | Sbjct 863 AACAAGTTGTAGAATTGCTGCT-GACAACAGAGGAAGAATGTATCCACCGCTT-CACAAG 920 Query 1033 GAATCAATTTGGAGTTTACATCTC-TCTTGTGAAAACGACTACTAAAATC-GGTAATCT- 1089 || | | |||||| | | |||| |||| ||| |||| || | |||| | ||| | || Sbjct 921 GAGT-ACTTTGGAAACTGCCTCTCTTCTT-TGAGAACGGCTGC-AAAAGCTGGTGAGCTG 977 Query 1090 ACTGGAGAATGAGT-TTGGA-TGGATTGCTTTGAAACTGCATCAAGCTGTTA-CCGAACA 1146 | |||||||||| | ||||| | | |||||||||| |||||||||| | || | ||||| Sbjct 978 A-TGGAGAATGA-TCTTGGATTTG-CTGCTTTGAAAGTGCATCAAGC-GGTAGCTGAACA 1033 Query 1147 CACTGGCG-AAAAG-ATCTCTTACGAAATAGATCAAAT-GTTGAAGTCTCCTTTACCGTT 1203 ||| | | ||||| ||||| | | || |||| ||| ||| ||||| ||||| | || Sbjct 1034 TACTAGTGAAAAAGTATCTCAAATG--ATTGATC-AATGGTTAAAGTCCCCTTT--CATT 1088 Query 1204 GCAAGCATATCGACTTTCCAATTTGAA-C-AT-A--GTTCACATGGGAAGTTCTCCAAGG 1258 | ||||| || | | |||||| | || | ||| |||||||| || || ||| Sbjct 1089 --TACCATATTGA-TCGGCTTTTTGAACCGATGAGCGTTGTGATGGGAAGCTCACCGAGG 1145 Query 1259 TTTAACAAGTACGGAAGCGAGTTTGGGATGGGGAAAGCG-GTGGCGGTTAGAAGCGGTTA 1317 ||||||||||| || | || ||||||||||| |||| | ||| | | ||||| || || Sbjct 1146 TTTAACAAGTATGGTTGTGAATTTGGGATGGGAAAAG-GAGTGACACTAAGAAGTGGCTA 1204 Query 1318 TGGCG-GTAAGTATGACGGGAAGGTATCAGCTTATCCAGGAAGACAAGGAGGAGCAAGTA 1376 ||| ||||| ||| || |||||||| ||||| || |||||| ||||||| | ||||| Sbjct 1205 -CGCGCATAAGTTTGATGGAAAGGTATCTGCTTACCCGGGAAGAGAAGGAGGGGGAAGTA 1263 Query 1377 TAGATTTGGAAGTATGTCTACTTCCAGAGTTTATGGAAGCTTTGGAATCAGATCAAGAGT 1436 |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1264 TAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTGGAATCAGATGAAGAGT 1323 Query 1437 TCATGTCTCTTGTCTCTTCTT 1457 | ||||| ||||| ||| ||| Sbjct 1324 TTATGTCACTTGTTTCT-CTT 1343 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57363908970 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5