BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07880.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487619 jgi|Araly1|487619|fgenesh2_kg.6__753__AT5G07880.1 948 0.0
> Ahg487619 jgi|Araly1|487619|fgenesh2_kg.6__753__AT5G07880.1
Length=780
Score = 948 bits (513), Expect = 0.0
Identities = 697/782 (89%), Gaps = 28/782 (4%)
Strand=Plus/Plus
Query 1 ATGGCTCCTAAGAATTCCAGCTGGAACCC---T--T--T--TGATGATGAG-A--AGGAG 48
|||||| ||||||||| ||||| |||||| | | | |||||||||| | |||||
Sbjct 1 ATGGCTGCTAAGAATTTCAGCTTGAACCCTTTTGATGATACTGATGATGAGAAGGAGGAG 60
Query 49 GCTGCTAAGAGTTTCAGTTTGAACCC-TTT--tgatgatgatgatgatgaCAAGGAGGTT 105
|||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 61 GCTGCTAAGAATTTCAGTTTGAACCCTTTTGATGATGATGATGATGATGATAAGGAGGTT 120
Query 106 GAGAAAAGATTCACTTCATCCTTGAAGCCCTCGGGAGGTAAA-GAG-A--ACCAGACGGT 161
||||||| |||||||||||| |||||| ||| ||| | ||| ||| | ||||||||||
Sbjct 121 GAGAAAACATTCACTTCATCGTTGAAGTTCTC-GGATGCAAAGGAGAACCACCAGACGGT 179
Query 162 TCAAGAACTTGAGAGCTACGCTGTGTATAACTCTGAGGAAACAACGAAAACCGTACAAGG 221
||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||
Sbjct 180 TCAAGAACTTGAGAGCTACGCTGTGTACGAGTCTGAGGAAACAACCAAAACCGTAAAAGG 239
Query 222 GTGTTTGAAAGTTGCTGAAGAGATTAGATGTGATGCTTCTAAAACTTTGGTTATGTTGAA 281
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 GTGTTTGAAAGTTGCTGAAGAGATTAGATGTGATGCTACTAAAACTTTGGTTATGTTGAA 299
Query 282 TGAACAAGGAGATCAAATTACTAGAACACACCAGAAGACGGTTGATCTCGATCATCATCT 341
||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct 300 TGACCAAGGAGATCAAATTACTAGAACACACCATAAGGCGGTTGATATCGATCATCATCT 359
Query 342 TTCTCGGGGTGAGAAGATTCTTGGACGCCTCGGAGGTGTTTTTTCAAGGACTTGGAAGCC 401
| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 360 TAGTCGGGGTGAGAAGCTTCTTGGACGCCTTGGAGGCATTTTTTCAAGGACTTGGAAGCC 419
Query 402 AAAGAAGTCTCGTTCTATAACTGGCCCTGTCATAACCAAAGGTGATTCACCTAAGAGAAA 461
||||||| ||||||| |||||||| ||||||| ||| | ||||||||| ||||||||||
Sbjct 420 AAAGAAGACTCGTTCCATAACTGGTCCTGTCAGAACTAGAGGTGATTCCCCTAAGAGAAG 479
Query 462 AGTTATCGACTTAAAGACTAGGGAAAAGCTGGGACTGAACCCTTCACTCAAACCAAAATC 521
||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 480 AGTTATCAACTTAAAGACTAGGGAAAATCTGGGACTGAACCATTCACTCAAACCAAAATC 539
Query 522 AAAAACACTTCCTGAAGCCGTTGATGCTTATCAGAAAACACAGAT-----T-GCAAAGCA 575
|| ||||||| ||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 540 AAGAACACTTGCTGAATCCGTTGATGCTTATCAGAAAACACAGATGGAGATTGCAAAGCA 599
Query 576 AGATGAAGCCCTTACCGACTTAAGCGCTCTTCTTGGCGAGTTGAAAAATATGGCAGTGGA 635
|||||||| |||| || ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 600 AGATGAAGTCCTTTCCAACTTAAGCGATCTTCTTGGCGAGCTGAAAAATATGGCAGTGGA 659
Query 636 CATGGGAACAGCAATCGAAAG-GCAAACCAATGAACTGGATCATCTTCAAGATAATGCTG 694
||||||||||||||||||||| | |||||| || ||| |||||||||||||| ||| ||
Sbjct 660 CATGGGAACAGCAATCGAAAGTGAAAACCA-TGGACTAGATCATCTTCAAGACGATGTTG 718
Query 695 ATGAGCTCAACTACAGAGTTAAGCAATCGAACCAACGGGCTCGCTATTTACTCCGGAAGT 754
||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 719 ATGAGCTTAACTACAGAGTAAAGCAATCGAACCAACGGGCTGGCCGTTTACTCCGGAAGT 778
Query 755 AA 756
||
Sbjct 779 AA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5