BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07890.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487621 jgi|Araly1|487621|fgenesh2_kg.6__755__AT5G07890.1 2119 0.0
> Ahg487621 jgi|Araly1|487621|fgenesh2_kg.6__755__AT5G07890.1
Length=1546
Score = 2119 bits (1147), Expect = 0.0
Identities = 1283/1349 (95%), Gaps = 7/1349 (1%)
Strand=Plus/Plus
Query 1 GGAGGATCATCAAATTCAAACATCATTTCTCCG-GCAAATTCGCCGTCGGAATTATCTCA 59
||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1 GGAGGATAAGCAAATTCAAAAATCATTTCTCCGATCAAATTCGCCGTCGGAATTATCTCA 60
Query 60 GAGAGGGATTGAGCTGCGAAGTGGTGATTTTTGTCTCTAAATGTCGAGTAGCTCGGGGAG 119
||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 61 GAGAGAAATTGAGCTGCGAAGTGGTGATTTTTGTATTTAAATGTCGAGTAGCTCGGGAAG 120
Query 120 TTTCTCGGGAAGCAGTAGCTCGGCGTGTAGTTCCAGAAGTGATTGTGAGAACTCGTTTGA 179
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 121 TTTCTCGGGAAGCAGTAGCTCGGCATGTAGTTCCAGAAGTGATTGCGAGAACTCGTTTGA 180
Query 180 TGTTGAAGATCTTTTGCAGATTGGGACTACACGCAGGGAGCTAAGGAAACAAAAGGACTT 239
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 181 TGTTGAAGAACTTTTACAGATTGGGACAACACGCAGGGAGCTAAGGAAACAAAAGGACAT 240
Query 240 GCTGAGAGAATCACAGCCCCATAGTATTGAACTAGTCAGAAGGTTGGAACTTCACACGAA 299
| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 241 GTTGAGAGAATCGCAGCCCCATAGTATCGAACTAGTCAGAAGGTTGGAACTCCACACGAA 300
Query 300 GTCATTATCTGAATCTCGCTTAGAAGACACAGCAAGAATTCAGATGATGGAGAAAGAATT 359
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GTCATTATCGGAATCTCGCTTAGAAGACACAGCACGAATTCAGATGATGGAGAAAGAATT 360
Query 360 ATTGAATTGCTATAAGGAAATTGATTACTTGCGGGATCAACTAATTTTCAGAAGCAAGGA 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 ATTGAATTGCTATAAGGAAATTGATTACTTGCGAGATCAACTAATTTTCAGAAGCAAGGA 420
Query 420 AGTGAATTATCTCAATGAACATCTGCACGATCTTGAGTTCAAATTGGCTGAATCAAGGAA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 AGTGAATTATCTCAATGAACATCTGCACGATCTTGAATTCAAATTGGCTGAATCAAGGAA 480
Query 480 TCTGGAAGAAGAAGTTAACTCTTTAAGAGATGAGTTGTGTATGTCTAAATCCGAGCATTT 539
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TCTGGAAGAGGAAGTTAACTCTTTAAGAGATGAGTTGTGTATGTCTAAATCTGAGCATTT 540
Query 540 GTTGTTGTTGCAAGAACTCGAGAGCAAGGAAATAGAACTACAGTGTTCGTCTCTTACATT 599
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||
Sbjct 541 GTTGTTGTTGCAAGAACTCGAGAGCAAAGAAATAGAGCTACAGTGTTCGTCTCTTTCCTT 600
Query 600 GGAGAAACTGGAAGAGACCATCTCGTCCTTAACATTAGAGTCCTTGTGCGAAATAGAAAG 659
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGAAACTGGAGGAGACCATGTCATCCTTAACATTAGAGTCCTTGTGCGAAATAGAAAG 660
Query 660 CATGAAGCTTGATATAACAGCGTTGGAGCAAGCACTCTTTGACGCTATGAAAATCCAAGA 719
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 661 CATGAAGCTTGATATAACAGCGTTGGAGCAAGCACTCTTTGATGCAATGAAAATCCAAGA 720
Query 720 AGAAAGCATCCAAGAAAAAGATCAATTAAAAGGAATAATCGAAGAGTCCCAGTTTCAGTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAAGCATCCAAGAAAAAGATCAATTAAAAGGAATAATCGAAGAGTCCCAGTTTCAGTC 780
Query 780 TCAAAGGGCAAAAGAGAATGTCAAGTACATCGAAAAGCAAAACGAAGACCTGAGGGAGAA 839
|||||||||| ||||||||||||| || ||||||||| |||| ||||| |||||||||||
Sbjct 781 TCAAAGGGCACAAGAGAATGTCAAATATATCGAAAAGAAAAATGAAGAGCTGAGGGAGAA 840
Query 840 ATTTACTGCCTCTGAAAAGAGTATCAAAGATTTCTTTCAAAGTACTAAAGAACGGTTAGA 899
||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 ATTTAATGTCTCTGAAAAGAGTATCAAAGAGTTCTTTCAAAGTACTAAAGAACGGTTAGA 900
Query 900 AAGTGAAGATGAACAGCCTCTAAATGCAATGTGCTTCTTCGCTGAACTGAGCCATGTGCT 959
||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 901 AAGTGAAGATGAAGAGCCTCTAACTGCAGGGTGCTTCTTTGCTGAACTGAGCCATGTGCT 960
Query 960 TCCAGTGTCTAATGAAGTTCGCAATTGTTTTGATGCTATCATGAAGAAACTAGAACTTTC 1019
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 TCCAATGTCTAATGAAGTTCGCAATTGTTTTGATGCAATCATGAAGAAACTAGAACTTTC 1020
Query 1020 TCAGAATGTGAATTTGATTGATAAAGTGGAGGGTATGGGGAAACAGATACATCAGCACGA 1079
||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 1021 TCAGAATGTGAATTTGACTGACAAAGTGGAGGGTATGGCGAAACAGATAGATCAGCACGA 1080
Query 1080 AGATGTTGTAAAGCAACTCAAAGAAGAACTGAAACAGGAGAAACTGAAGGCGAAGGAAGA 1139
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1081 AGATGTTGTAAAGCAACTCAAGGACGAACTGAAACAGGAGAAACTGAAGGCGAAGGAAGA 1140
Query 1140 AGCAGAAGACCTTACACAAGAAATGGCTGAATTAAGGTATAAGATGACATGTTTGCTTGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGCAGAAGACCTTACACAAGAAATGGCTGAATTAAGGTATAAGATGACATGTTTGCTTGA 1200
Query 1200 TGAGGAACGCAATCGCCGTGTGTGCATAGAACAAGCATCATTACAGAGAATATCCGAGCT 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1201 TGAGGAACGCAATCGCCGTGTGTGCATAGAACAAGCATCATTACAGAGAATAGCCGAGCT 1260
Query 1260 AGAAGCACAGATCAAGAGAGATG-TAAAAAAGCC-TGCTTCCAATGAAATGCTGCCTCTT 1317
||||||||||||||||||||| | |||||||||| | |||||| ||||||||||||||||
Sbjct 1261 AGAAGCACAGATCAAGAGAGA-GATAAAAAAGCCCT-CTTCCACTGAAATGCTGCCTCTT 1318
Query 1318 CCTGGGTTATGAAAA--GTCTTGAGCTTT 1344
|||||||||||||| ||||||||||||
Sbjct 1319 ACTGGGTTATGAAAAAAGTCTTGAGCTTT 1347
Score = 206 bits (111), Expect = 6e-52
Identities = 159/182 (87%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 1412 GTGCTCGAGTGATTGAAAGACGGATTGCAAGTTTGGATGTTGATTTGTATAGAAATCAAA 1471
|||||||||||||||||||| |||||| | |||||| || ||||||||||| | |||| |
Sbjct 1368 GTGCTCGAGTGATTGAAAGATGGATTGTACGTTTGGGTGGTGATTTGTATACACATCATA 1427
Query 1472 TGGTAGGGTAGTCAGAAGAAATCCAGAGACTTGGAAGAGGTTTGGAGACGCAAACAAAAG 1531
| ||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1428 TCGTAGGGTGGTCAGAAG--ATCCAGAGACTTGGAAGAGGTTTGGAGACACAATCAAAAG 1485
Query 1532 AAGTTTGGGTTAAG-AGTTTAGCTTTAGAGATTGATGTTTTCTTTATTCTGAGTGTACAT 1590
| ||||| || ||| | | |||||||||||||||||||||||| | || |||||||||||
Sbjct 1486 AGGTTTGAGTAAAGCA-TATAGCTTTAGAGATTGATGTTTTCTCTCTTTTGAGTGTACAT 1544
Query 1591 AA 1592
||
Sbjct 1545 AA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5