BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07900.1
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487623 jgi|Araly1|487623|fgenesh2_kg.6__757__AT5G07900.1 2006 0.0
> Ahg487623 jgi|Araly1|487623|fgenesh2_kg.6__757__AT5G07900.1
Length=1356
Score = 2006 bits (1086), Expect = 0.0
Identities = 1272/1362 (93%), Gaps = 12/1362 (1%)
Strand=Plus/Plus
Query 13 TCTAGTAATGGCGGTCGCAATACCTCAAGCCACTTCTCTTACGAACCTCGTCTTCCTCAC 72
||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||
Sbjct 1 TCTAGTAATGGCGGTCGCAGTACCTCAAGCCACTTCTCTTTCGAGGCTCTTCTTCCTCAC 60
Query 73 GAAATTAATCCCACGAGGAAGCTTCACCACCATACTACCTAAGCATCATCGGAAACCA-A 131
|||| |||||| ||||| |||||||||| |||||||||| ||||||||||| || |
Sbjct 61 GAAACCAATCCCTGGAGGAGGCTTCACCACTTTACTACCTAAAAATCATCGGAAA-CACA 119
Query 132 TCTTCGTATTCTCTCTCCAGACTCAATTTTCTTCTCCAGTAACCACACTCACCTCCAAAA 191
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTCGTTTTCTCTGTCCAGACTCAATTTTCTTCTCCAGTAACCACACTCACCTCCAAAC 179
Query 192 ACCCTAAAGATGATGAGCAACAGCAAAAACTCTCCTTCACCCTCAACTACCTTATCGACT 251
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 ACCCTAAAGATGA-GA--AACAGCAAAAACTCTCCTTCACCATCAACTACCTTATCGACT 236
Query 252 CATGTGGACTATCTCCAGATTCCGCCACCGTAGCCTCTCGTAAGCTCTTACTAGATTCAC 311
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 CATGTGGATTATCTCCAGATTCCGCCACCGTAGCCGCTCGTAAGCTCTTACTAGATTCAC 296
Query 312 CAGAACGACCCAACACAGTTCTCAACCTTCTTCGTGACCATGGATTCACCACAGCTCAAA 371
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 297 CAGAACGACCCAACACTGTTCTAAACCTTCTTCGTGACCATGGATTCACCACTGCTCAAA 356
Query 372 TCTCATCTCTCGTCAAGAAACGTCCTGTTCTCTTATTAGCCAATGCTGAATCTGTCCTCC 431
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 357 TCTCAACTCTCGTCAAGAAACGTCCCGTTCTCTTATTAGCCAATGCTGAATCAGTCCTCC 416
Query 432 TCCCGAAACTCAGCTTCTTTCTCTCAATTGGTGTCTCAAAATCTTTACTTGCTCGAACTT 491
||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |
Sbjct 417 TCCCGAAACTCCTATTCTTTCTCTCAATTGGCGTCTCAAACTCATTACTTGCTCGAACCT 476
Query 492 TAGCTTCTGATCCAACCATTTTGACTAGATCCCTTGTTAATCAGCTTATCCCTTCTTAC- 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TAGCTTCTGATCCAACCATTTTGACTAGATCCCTTGTTAATCAGCTTATCCCTTCTTACA 536
Query 551 AATTTCCTTAAAAGCGTTCTTGATTCCGATGAGAAGATTGTGGCGGCGTTGCGGAGGACG 610
||||| || ||||| ||||||||||| || |||||||| ||||||||||||||| |||||
Sbjct 537 AATTT-CTCAAAAGTGTTCTTGATTCAGACGAGAAGATCGTGGCGGCGTTGCGGCGGACG 595
Query 611 ACTTGGGTTTTCCTTGAGGATCACACTAAGAACCTTGTCCCAAACATCAACTATATGGCG 670
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||| ||
Sbjct 596 ACTTGGGTTTTCCTTGAGGATCACACCAAGAATCTTGTACCAAACATCAACTACATGTCG 655
Query 671 GAGACTGGTGTTCCTGAGAAATGTATCAAGCTGCTTCTCACGCATTTTCCTGAAGCTGTG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAGACTGGTGTTCCTGAGAAATGTATCAAGCTGCTTCTCACGCATTTTCCTGAAGCTGTG 715
Query 731 ATGCAGAAGAACCATGAGTTCCAAGCAATTGCTAAGCAAGCTCAAGAGATGGGGTTCAAT 790
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 716 ATGCAGAAGAGCCATGAGTTCCAAGCAATCGCTAAGCAAGCTCAAGAGATGGGATTCAAT 775
Query 791 CCTCAAAAATCAACATTTGTGTTGGCCATTCATGC-TCTCTCTGGGAAAGGAAACAAATC 849
|||||||||||||| ||||| ||||| ||||| || | | ||||||||||||||||||||
Sbjct 776 CCTCAAAAATCAACCTTTGTTTTGGCGATTCACGCGT-TATCTGGGAAAGGAAACAAATC 834
Query 850 GATATGGGACAAATGTTTTGAGGTTTATCAGAGATGGGGATGGTCGGAAGATGATATCAT 909
|||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 835 CATATGGGACAAATGCTTTGAGGTCTACCAGAGATGGGGTTGGTCGGAAGATGATATCAT 894
Query 910 GTGTGCGTTCAAGAAGCACCCTCATTGTATGATGTTGTCTGAGAGGAAGATTAACAGAAC 969
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 895 GTGTGCGTTCAAGAAGCACCCTCACTGTATGATGTTGTCTGAGAGGAAGATTAACAGAAC 954
Query 970 GATGGAA-TATTTTGTGAATGAGATGAATATGGCGCCTAGATCGATCGCACAGTGTCCAG 1028
|||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 955 GATG-AAGTTTTTTGTGAATGAGATGAATTTGGCGCCTAGATCGATCGCACAGTGTCCAG 1013
Query 1029 TGGTGCTCTTCTTCAGCCTTGAGAAGAGGATTATCCCGAGGTGTTCGGTTACTAAGGTTT 1088
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| || |
Sbjct 1014 TGGTGCTCTTCTTCAGTCTGGAGAAGAGGATTATCCCAAGGTGTTCGGTTACTAAAGTGT 1073
Query 1089 TGGTATCGAACGGGCTTGTGAAAGAGGATTGGAGCTTGACGTCTTTGTTGGTTCCAGTGG 1148
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1074 TGGTATCGAACGGGCTTGTGAAGGAGGATTGGAGCTTGACATCATTGTTGGTTCCAGTGG 1133
Query 1149 AGAAAGTGTTCTTGGAGAAGCTCGTGATCAAGTACGAAGAGGAGTTGCCTGAGTTGATGA 1208
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1134 AGAAAGTGTTTTTGGAGAAGCTCGTGATCAAGTACGAAGAAGAGTTGCCTGAGTTGATGG 1193
Query 1209 ATCTGTATCTAGGATGCACCAAACTCTGAGCTTTTGTTTTTGACTGTTTTCATTATCAAA 1268
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1194 ATGTGTATCTAGGATGCACCAAACTCTGAGCTTTTGTTTTCGACTGTTTTCATTATCAAA 1253
Query 1269 TGTCAGATGCTGAGAGACATGAATCTTTGTGAAAAGAGTCTAGTGTGTAATCCAATTTTG 1328
| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1254 TTTCAGATGCTGAGTGACATGAATCTTT-TGAAAAGAGTGTAGTGTGTAATCCAATTTTG 1312
Query 1329 GTAGTGAAAGGAAAGCTGATTAGCAAGCCCAACGTGTGTTTT 1370
||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1313 GTAGTCAAAGGAAAGCTGATTAGCAAGCCCAAAGTGTGTTTT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5