BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07910.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487624 jgi|Araly1|487624|fgenesh2_kg.6__758__AT5G07910.1 1786 0.0
> Ahg487624 jgi|Araly1|487624|fgenesh2_kg.6__758__AT5G07910.1
Length=1218
Score = 1786 bits (967), Expect = 0.0
Identities = 1106/1169 (95%), Gaps = 26/1169 (2%)
Strand=Plus/Plus
Query 195 tatatttttctgtttttggggacgaatttgg----ctttct--ttctATATAACCCGCGA 248
||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 58 TATATTTTT-TCTTTTTGGGGACGAATTTGGCTTTCTTTCTAATTCTATATAACCCGCGA 116
Query 249 GCGAGACAGAGACCTTGACCCTCACC--TAAACCTCAAAAACCAAATTTTGACCCCAAAA 306
||| ||||||||||||||||||| |||||||| ||| |||| ||| ||| ||||
Sbjct 117 --GAG--AGAGACCTTGACCCTCACCTATAAACCTC-GAAA-CAAAAATTGGCCCAAAAA 170
Query 307 GCCATCTCTTTTAGCAATC--A--GATTACTTTGAAACTTTCTCTGGGTATCTGAGATTT 362
|||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 171 GCCATCTCTTTTGGCAATCAGATTGATTACTTTGAAACTTTCTCTGGGTCTCTGAGATTT 230
Query 363 CTTC-ATTATTTATA--TAAATCATCTAATCGAAATCTACTGCGACGATCGGCGAAGAAT 419
||| |||||||||| ||| |||||| ||| ||||| ||||||||||||||||||||||
Sbjct 231 ATTCTATTATTTATATCTAATTCATCTCATCAAAATCAACTGCGACGATCGGCGAAGAAT 290
Query 420 CGGAAACACAAAAATGGGGTGTTGCGCGAGCAATACAGCTGGTGGTTCAAAGGCTAATCG 479
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 291 CGGAAACACAGAAATGGGGTGTTGCGCGAGCAATACAGCTGGTGGTTCAAATGCTAATCG 350
Query 480 GATCTCACGCTGGCGATCTACAGGCATTGTTGGTCTCCGCGACTCCAAATTGAAGACATT 539
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GATCTCTCGGTGGCGATCTACAGGCATTGTTGGTCTCCGCGACTCCAAATTGAAGACATT 410
Query 540 TCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAA 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 411 TCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACTCTTGATCTAACACACAATAA 470
Query 600 GATTGCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGTTAATAGC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 471 GATTGCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGCTAATAGC 530
Query 660 TGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTCAATCTCTCAAAGTTTT 719
||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 531 TGATAATCTGGTTGAGCGCCTTCCAGGGAATCTAGGGAAACTACAATCTCTCAAAGTTTT 590
Query 720 GATGCTTGATGGAAACCGCATCAGCTGTTTGCCTGATGAATTGGGCCAGTTGGTAAGGCT 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 591 GATGCTTGATGGAAACCGCATCAGCTGTTTGCCTGATGAATTGGGTCAGTTGGTAAGGCT 650
Query 780 TGAGCAACTATCAATCTCAAGAAATATGCTCATATACTTGCCCGATACTATTGGTAGTCT 839
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TGAGCAACTTTCAATCTCAAGAAATATGCTCATATACTTGCCCGATACTATTGGTAGTCT 710
Query 840 CCGCAATCTACTGCTGTTGAATGTCTCAAATAACAGATTGAAATCCCTTCCTGAATCAGT 899
|||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 711 CCGCAATCTAGTGCTGTTGAATGTCTCGAATAACAGATTGAAATCCCTTCCAGAATCAGT 770
Query 900 AGGGAGCTGTGCTTCTTTAGAAGAAGTACAGGCTAATGATAACGTTGTTGAAGAGCTTCC 959
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 771 AGGGAGCTGTGCTTCTTTAGAAGAAATACAGGCTAATGATAACGTTGTTGAAGAGCTTCC 830
Query 960 TGCATCACTCTGCAATCTGATTCAGTTAAAGTCGCTTTCCTTAGACAATAATCAAGTGAA 1019
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 831 TGCATCACTCTGCAATCTGATTCAGTTAAAGTCGCTTTGCTTAGACAATAATCAAGTGAA 890
Query 1020 CCAGATTCCAGATGGATTGCTGATACATTGCAAGAGTCTGCAAAACCTTTCTTTGCATAA 1079
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 891 CCAGATTCCAGATGGATTGCTGATACATTGCAAGAGTCTGCAAAATCTTTCTTTGCATAA 950
Query 1080 CAATCCTATTTCCATGGATCAGTTTCAGCTGATGGAAGGATACCAAGACTTTGAAGAGAG 1139
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 951 CAATCCTATTTCCATGGATCAGTTTCAGCTGATGGAAGGATACCAAGAATTTGAAGAGAG 1010
Query 1140 GAGAAAGAAGAAATTTGATAAGCAAATCGATTCGAATGTGATGATGGGCTCTAAAGCACT 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1011 GAGAAAGAAGAAATTTGATAAGCAAATCGATTCGAATGTGATGATGGGCTCTAAAGGACT 1070
Query 1200 TGATGTAGGCGTTGATAAATGAAAACTGTCTTCACATCTCCTTACTTTGTCGGTTCGGTG 1259
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1071 TGATGTAGGCGTTGATAAATGAAAACTGTCTTCACATCCCCTTACTTTGTAAGTTCGGTG 1130
Query 1260 AATGAGGATCATCGTTTCGTGTAAGAAATATTGTTGTAAAActctctctctctct--ttc 1317
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1131 AATGAGGATCATCGTTTCGTGTAAGAAATATTGTTGTAAAACTATCTCTCTCTCTCCTTC 1190
Query 1318 tctcGT-CTGCAAGATTTAGAATCTCTGT 1345
|||| | ||||||||||||||||||||||
Sbjct 1191 TCTC-TACTGCAAGATTTAGAATCTCTGT 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5