BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07910.1 Length=1536 Score E Sequences producing significant alignments: (Bits) Value Ahg487624 jgi|Araly1|487624|fgenesh2_kg.6__758__AT5G07910.1 1786 0.0 > Ahg487624 jgi|Araly1|487624|fgenesh2_kg.6__758__AT5G07910.1 Length=1218 Score = 1786 bits (967), Expect = 0.0 Identities = 1106/1169 (95%), Gaps = 26/1169 (2%) Strand=Plus/Plus Query 195 tatatttttctgtttttggggacgaatttgg----ctttct--ttctATATAACCCGCGA 248 ||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 58 TATATTTTT-TCTTTTTGGGGACGAATTTGGCTTTCTTTCTAATTCTATATAACCCGCGA 116 Query 249 GCGAGACAGAGACCTTGACCCTCACC--TAAACCTCAAAAACCAAATTTTGACCCCAAAA 306 ||| ||||||||||||||||||| |||||||| ||| |||| ||| ||| |||| Sbjct 117 --GAG--AGAGACCTTGACCCTCACCTATAAACCTC-GAAA-CAAAAATTGGCCCAAAAA 170 Query 307 GCCATCTCTTTTAGCAATC--A--GATTACTTTGAAACTTTCTCTGGGTATCTGAGATTT 362 |||||||||||| |||||| | ||||||||||||||||||||||||| |||||||||| Sbjct 171 GCCATCTCTTTTGGCAATCAGATTGATTACTTTGAAACTTTCTCTGGGTCTCTGAGATTT 230 Query 363 CTTC-ATTATTTATA--TAAATCATCTAATCGAAATCTACTGCGACGATCGGCGAAGAAT 419 ||| |||||||||| ||| |||||| ||| ||||| |||||||||||||||||||||| Sbjct 231 ATTCTATTATTTATATCTAATTCATCTCATCAAAATCAACTGCGACGATCGGCGAAGAAT 290 Query 420 CGGAAACACAAAAATGGGGTGTTGCGCGAGCAATACAGCTGGTGGTTCAAAGGCTAATCG 479 |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 291 CGGAAACACAGAAATGGGGTGTTGCGCGAGCAATACAGCTGGTGGTTCAAATGCTAATCG 350 Query 480 GATCTCACGCTGGCGATCTACAGGCATTGTTGGTCTCCGCGACTCCAAATTGAAGACATT 539 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 GATCTCTCGGTGGCGATCTACAGGCATTGTTGGTCTCCGCGACTCCAAATTGAAGACATT 410 Query 540 TCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAA 599 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 411 TCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACTCTTGATCTAACACACAATAA 470 Query 600 GATTGCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGTTAATAGC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 471 GATTGCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGCTAATAGC 530 Query 660 TGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTCAATCTCTCAAAGTTTT 719 ||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct 531 TGATAATCTGGTTGAGCGCCTTCCAGGGAATCTAGGGAAACTACAATCTCTCAAAGTTTT 590 Query 720 GATGCTTGATGGAAACCGCATCAGCTGTTTGCCTGATGAATTGGGCCAGTTGGTAAGGCT 779 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 591 GATGCTTGATGGAAACCGCATCAGCTGTTTGCCTGATGAATTGGGTCAGTTGGTAAGGCT 650 Query 780 TGAGCAACTATCAATCTCAAGAAATATGCTCATATACTTGCCCGATACTATTGGTAGTCT 839 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 TGAGCAACTTTCAATCTCAAGAAATATGCTCATATACTTGCCCGATACTATTGGTAGTCT 710 Query 840 CCGCAATCTACTGCTGTTGAATGTCTCAAATAACAGATTGAAATCCCTTCCTGAATCAGT 899 |||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 711 CCGCAATCTAGTGCTGTTGAATGTCTCGAATAACAGATTGAAATCCCTTCCAGAATCAGT 770 Query 900 AGGGAGCTGTGCTTCTTTAGAAGAAGTACAGGCTAATGATAACGTTGTTGAAGAGCTTCC 959 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 771 AGGGAGCTGTGCTTCTTTAGAAGAAATACAGGCTAATGATAACGTTGTTGAAGAGCTTCC 830 Query 960 TGCATCACTCTGCAATCTGATTCAGTTAAAGTCGCTTTCCTTAGACAATAATCAAGTGAA 1019 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 831 TGCATCACTCTGCAATCTGATTCAGTTAAAGTCGCTTTGCTTAGACAATAATCAAGTGAA 890 Query 1020 CCAGATTCCAGATGGATTGCTGATACATTGCAAGAGTCTGCAAAACCTTTCTTTGCATAA 1079 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 891 CCAGATTCCAGATGGATTGCTGATACATTGCAAGAGTCTGCAAAATCTTTCTTTGCATAA 950 Query 1080 CAATCCTATTTCCATGGATCAGTTTCAGCTGATGGAAGGATACCAAGACTTTGAAGAGAG 1139 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 951 CAATCCTATTTCCATGGATCAGTTTCAGCTGATGGAAGGATACCAAGAATTTGAAGAGAG 1010 Query 1140 GAGAAAGAAGAAATTTGATAAGCAAATCGATTCGAATGTGATGATGGGCTCTAAAGCACT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1011 GAGAAAGAAGAAATTTGATAAGCAAATCGATTCGAATGTGATGATGGGCTCTAAAGGACT 1070 Query 1200 TGATGTAGGCGTTGATAAATGAAAACTGTCTTCACATCTCCTTACTTTGTCGGTTCGGTG 1259 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1071 TGATGTAGGCGTTGATAAATGAAAACTGTCTTCACATCCCCTTACTTTGTAAGTTCGGTG 1130 Query 1260 AATGAGGATCATCGTTTCGTGTAAGAAATATTGTTGTAAAActctctctctctct--ttc 1317 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1131 AATGAGGATCATCGTTTCGTGTAAGAAATATTGTTGTAAAACTATCTCTCTCTCTCCTTC 1190 Query 1318 tctcGT-CTGCAAGATTTAGAATCTCTGT 1345 |||| | |||||||||||||||||||||| Sbjct 1191 TCTC-TACTGCAAGATTTAGAATCTCTGT 1218 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57516269950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5