BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07930.3
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325399 jgi|Araly1|325399|fgenesh1_pm.C_scaffold_6000619 924 0.0
> Ahg325399 jgi|Araly1|325399|fgenesh1_pm.C_scaffold_6000619
Length=816
Score = 924 bits (500), Expect = 0.0
Identities = 735/841 (87%), Gaps = 45/841 (5%)
Strand=Plus/Plus
Query 32 ATGGCTTCTTCCGATGATCCAGCTCCGGAGAACAACCACGTCTCCGTCTTAGCTAGACAA 91
||||||| |||| ||||| ||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 1 ATGGCTTTTTCCAATGATTCAGCTCCGGAGAACAACAACGTCTCCGTCGTAGTTAGACAA 60
Query 92 GCTCGAAACCCACCGACACATTTTTTCTTTCCTCACAATCCTTCTCCTCGTACTTACTAC 151
||| | ||||||| | || ||||||||||||||||| || ||||||||||||| |||||
Sbjct 61 CCTCTACACCCACCCATACCTTTTTTCTTTCCTCACACTCTTTCTCCTCGTACTCACTAC 120
Query 152 TTCTCGGCGCCACCACAGATTTATTTCATCTCCGACATATATCTCCCTCCTCCTCCATCA 211
||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||
Sbjct 121 TTCTCGGCGCCACCACAGATTTACTTCATCTCCGACATAAATCT--C-CCTCCTCCATCA 177
Query 212 ATATGGGTGTATTATCCTCTTTGGTATATTAACCCTAACCCTAA-TGTATATGAGTCTAC 270
||||||||||||||||||||||||||||| ||| |||||||||| | |||||||| ||
Sbjct 178 ATATGGGTGTATTATCCTCTTTGGTATATAAACTCTAACCCTAACCG-GTATGAGTCAAC 236
Query 271 ACAAGAACTTCCTCAACGTTACTCTCCAAACCCTAGCCAAGAG---ATGACTCTTCCACC 327
||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||
Sbjct 237 ACAAGAACTTCCTCAACCCTACTCTCCAACCCCTAGCCAAGAGCTCATGACTCTTCCCCC 296
Query 328 GACTAGTAGTAGAAGAGTTTTTGGCCGGAGAAGTTACGAACTATGTGAGAAGGTGACATG 387
|||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 297 GACTAGTAGTAGAAGAGTTTTTGGCCGGAGAAGTCACGGTCGATGTGAGAAGGTGACATG 356
Query 388 GAGGACAAGTATCAAGCCGGAAGTTGAATCCAACGGTGATCACATCACAACCGTCATGCT 447
||| | ||||||||||||||||||||||||||| || ||||||||||||||| || |
Sbjct 357 GAGAAGAAGTATCAAGCCGGAAGTTGAATCCAAGGGCGATCACATCACAACCAACAGG-- 414
Query 448 TCGCAATATACCGAACCGATACACGAGAGAGATGATGATTCAGTTCATGGATAAGCATTG 507
| || || ||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 415 --G---TAC-CC-AACCGATACACGAGAGAGATGATGATTGAGTACATGGATAAGCACTG 467
Query 508 CGAAGAAGCCAATAAAAGTGGGAAAAATGAAGAGTTTACAATCTCTGCTTATGATTTTAT 567
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 468 CGAAGAAGCCAATATAAGTGGGAAAAATGAAGAATTTACAATCTCTGCTTATGATTTCAT 527
Query 568 TTACCTTCCGATAGACTTTAGGACTACAATGAACAAAGGGTATGCTTTCGTGAACTTCAC 627
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TTATCTTCCGATAGACTTTAGGACTACAATGAACAAAGGGTATGCTTTCGTGAACTTCAC 587
Query 628 AAATGCAAAAGCAGTGTCCAAGTTTAAGGCTGCTTGCAACAACAAGCCGTGGTGCCATTT 687
||| ||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 588 AAAGGCAGAAGCAGTGACGAAGTTTAAGGCTGCTTGCAACCACAAGCCGTGGTGCCATTT 647
Query 688 CTACTCaaaaaaaGAACTTGAGATTACTTATGCTAGAATTCAGGCTAATGAGCTGGTGAA 747
||||||||||||||| | | | | | | | | ||||||||||||
Sbjct 648 TTACTCAAAAAAAGAA---G-G----C--A----A-A-----G---A-TGAGCTGGTGAA 683
Query 748 ACGTTTCCAGCATATGACATATCCGGAGGAGGCCTACAGTGCGGTATGTTTCAGCCCAGC 807
|||||||||||| ||||| ||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 684 ACGTTTCCAGCAAATGACCTATCCGGCTGAGGCATACAGTGCGCTATGTTTCAGCCCAGC 743
Query 808 TCGT-AGCGGAGGGAA-AGATACAGTTCAAACCACAATGGTCGGTAAATGCAATGAACCA 865
|||| | ||||||| | | ||||||||||||||||||||||||||||||| | ||||||
Sbjct 744 TCGTGA-CGGAGGGGATA-ATACAGTTCAAACCACAATGGTCGGTAAATGTACCGAACCA 801
Query 866 G 866
|
Sbjct 802 G 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42125823285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5