BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07950.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325400 jgi|Araly1|325400|fgenesh1_pm.C_scaffold_6000620 1301 0.0
Ahg906228 jgi|Araly1|906228|Al_scaffold_0003_3356 449 2e-125
Ahg905958 jgi|Araly1|905958|Al_scaffold_0003_3086 414 6e-115
Ahg912755 jgi|Araly1|912755|Al_scaffold_0001_3009 403 1e-111
Ahg911467 jgi|Araly1|911467|Al_scaffold_0001_1721 403 1e-111
Ahg900312 jgi|Araly1|900312|Al_scaffold_0004_962 403 1e-111
Ahg940645 jgi|Araly1|940645|scaffold_601189.1 311 9e-84
Ahg898848 jgi|Araly1|898848|Al_scaffold_0005_2814 183 2e-45
Ahg353479 jgi|Araly1|353479|fgenesh1_pg.C_scaffold_7000652 183 2e-45
Ahg341028 jgi|Araly1|341028|fgenesh1_pg.C_scaffold_3000791 183 2e-45
Ahg487627 jgi|Araly1|487627|fgenesh2_kg.6__761__AT5G07940.1 163 3e-39
> Ahg325400 jgi|Araly1|325400|fgenesh1_pm.C_scaffold_6000620
Length=864
Score = 1301 bits (704), Expect = 0.0
Identities = 791/834 (95%), Gaps = 2/834 (0%)
Strand=Plus/Plus
Query 168 TCTCCGGGGAGTTTTTCGTCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTT 227
||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 TCTCCGGCGAGTTTATCATCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTT 90
Query 228 AGGAACCAGTGGTCTAACCTGTCGAATTGTCGGCAACAGTGGATCGTCGCTTGTTCTGCG 287
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 91 AGGAATCAGTGGTCTAAACTGTCGAATTGTCGACAACAGTGGATCGTCGCTTGTTCTGCG 150
Query 288 GGAAGATCTCACGCTACTTTGCTAGTCAATTCGTATCTGTCACAAAAGTATATGCCAATG 347
||||||||||||||||||| ||| |||||||||||| | || ||||||||||||||||||
Sbjct 151 GGAAGATCTCACGCTACTTCGCTCGTCAATTCGTATTTATCTCAAAAGTATATGCCAATG 210
Query 348 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGCTTTGAAGAAGCTG 407
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 211 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATTAAGAAGAAAGCTTTGAAGAAGCTG 270
Query 408 TTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAAGGAAATGGTAGCT 467
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 271 TTTAAGCAACAGAGTTCCTATCGAATCAAGCTTTTATCGTCGTACAAGGAAATGGTAGCT 330
Query 468 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACACGAAGCTGA-GTAC 526
|||||||||||||||||| ||||||||||||||||||||||||| ||||| || | ||||
Sbjct 331 GTTGTTGTTGAGATGGTATATGCAAGCAGATCTCTGAGATGTTATACGAAACT-AGGTAC 389
Query 527 CGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATGCTGGAGATTGCGG 586
|||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct 390 CGGGTCACTTGTACAGTTCTCTGGCTCTAAGGAAGATTCAAGTGATGCTGGAGATTGTGG 449
Query 587 TGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGAGGAGCT 646
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 450 TGGCATCCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGGGGAGCT 509
Query 647 TGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGCTCATAATGGAACTGATCTC 706
|||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 510 TGTGGAAATGTTCAAACGCGAAGTAATGGTAAAGAGATTGCTCTTAATGGAACTGATCTC 569
Query 707 TTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGTCAGATGAGCTTTACCATGG 766
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 570 TTTAAGCACTGAAGTTCCTCAACCCGTCAACAACAGTTGGTCAGATGAGCTTTACCATGG 629
Query 767 AGAATTTGATCATCTCACCAAATGTTCTTTATATTCTATGGAAGTAGCTAAGCCAGTTCT 826
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 630 GGAATTTGATCATCTCACCAAATGTTCTTTATATTCCATGGAAGTAGCTGAGCCAGTTCT 689
Query 827 CCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCAACCAGCCAAC 886
||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 690 CCCCAGAGTGAAAGAAAATAATCTCGGTATTTCTTCTATATCACAAACCAACCAGCCAAC 749
Query 887 CGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAAGTAAACATCGACACTCA 946
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 750 CGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAGGTAAACATTGACACTCA 809
Query 947 TAGGGTGGATGAGATATTAGCTTTGGTTGGGGAAGAAATTAGAGTCACCTTCTA 1000
||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 810 TAGGGTGGATGAGATATTAGCTTTGGTCGGGGAAGAAACTAGAGTCACCTTCTA 863
Score = 54.7 bits (29), Expect = 2e-06
Identities = 33/35 (94%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 90 ATGAGCATCTCGCAGTTTCCGCCGCCTGCTTCTCC 124
||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAGTGTCTCGCAGTTTCCGCCGCCTGCTTCTCC 35
> Ahg906228 jgi|Araly1|906228|Al_scaffold_0003_3356
Length=375
Score = 449 bits (243), Expect = 2e-125
Identities = 304/334 (91%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 348 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGCTTTGAAGAAGCTG 407
|||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 1 ATGGAGCTTGGTGTGTCGAGTGACATGTTTGATATCAAGAAGAACGCTTTGAAGAACCTG 60
Query 408 TTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAAGGAAATGGTAGCT 467
| || |||||||||| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAAGGAAATGGTAGCT 120
Query 468 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACACGAAGCTGA-GTAC 526
|||||||||||||||||||||||||||||||||||||||||||| || ||| | | ||||
Sbjct 121 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATACCAAGAT-ACGTAC 179
Query 527 CGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATGCTGGAGATTGCGG 586
|| ||||||| ||||||||| | || ||||||||||||| | ||||||||||||||| ||
Sbjct 180 CGAGTCACTTGTACAGTTCTTTTGCTCTAAGGAAGATTCCAGTGATGCTGGAGATTGTGG 239
Query 587 TGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGAGGAGCT 646
|||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 240 TGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTGAGAAGATGGCTGAGGAGTT 299
Query 647 TGTGGAGATGTTCAAACGCGAAGTAATGCTAAAG 680
|||||||||||||| |||| |||||||| |||||
Sbjct 300 TGTGGAGATGTTCATACGCCAAGTAATGATAAAG 333
> Ahg905958 jgi|Araly1|905958|Al_scaffold_0003_3086
Length=564
Score = 414 bits (224), Expect = 6e-115
Identities = 271/294 (92%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394
||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| ||
Sbjct 93 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 152
Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454
|||||||||||||| || |||||||||| | |||||||||||||||||||| ||||||||
Sbjct 153 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 212
Query 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 213 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 272
Query 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573
||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 273 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 331
Query 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627
|||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 332 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTG 385
Score = 207 bits (112), Expect = 1e-52
Identities = 123/128 (96%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 437 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 496
Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCC-TCAACCCATCAACAACAGTTGG 746
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 497 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCCTCAACCCATCAACAACAGTTGG 556
Query 747 TCAGATGA 754
||||||||
Sbjct 557 TCAGATGA 564
> Ahg912755 jgi|Araly1|912755|Al_scaffold_0001_3009
Length=729
Score = 403 bits (218), Expect = 1e-111
Identities = 269/294 (91%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394
||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| ||
Sbjct 195 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 254
Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454
|||||||||||||| || |||||| ||| | |||||||||||||||||||| ||||||||
Sbjct 255 TTTGAAGAAGCTGTCTAAGCAACATAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 314
Query 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 315 GGAAATGGTAGCCGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 374
Query 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573
||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 375 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 433
Query 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627
|||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 434 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTG 487
Score = 292 bits (158), Expect = 3e-78
Identities = 180/190 (95%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 539 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 598
Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 658
Query 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805
||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||
Sbjct 659 CAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 717
Query 806 GGAAGTAGCT 815
||||||||||
Sbjct 718 GGAAGTAGCT 727
> Ahg911467 jgi|Araly1|911467|Al_scaffold_0001_1721
Length=627
Score = 403 bits (218), Expect = 1e-111
Identities = 269/294 (91%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394
||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| ||
Sbjct 93 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 152
Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454
|||||||||||||| || |||||||||| | |||||||||||||||||||| ||||||||
Sbjct 153 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 212
Query 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 213 GGAAATGGTAGCCGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 272
Query 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573
||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 273 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 331
Query 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627
|||||||||| |||||||| ||||| |||||||| |||||||||||| ||||||
Sbjct 332 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTCTGGAATGTCTCTACATTTG 385
Score = 292 bits (158), Expect = 3e-78
Identities = 180/190 (95%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 437 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 496
Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 556
Query 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805
||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||
Sbjct 557 CAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 615
Query 806 GGAAGTAGCT 815
||||||||||
Sbjct 616 GGAAGTAGCT 625
> Ahg900312 jgi|Araly1|900312|Al_scaffold_0004_962
Length=729
Score = 403 bits (218), Expect = 1e-111
Identities = 269/294 (91%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394
||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| ||
Sbjct 195 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 254
Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454
|||||||||||||| || |||||| ||| | |||||||||||||||||||| ||||||||
Sbjct 255 TTTGAAGAAGCTGTCTAAGCAACATAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 314
Query 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 315 GGAAATGGTAGCCGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 374
Query 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573
||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 375 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 433
Query 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627
|||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 434 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTG 487
Score = 292 bits (158), Expect = 3e-78
Identities = 180/190 (95%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 539 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 598
Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 658
Query 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805
||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||
Sbjct 659 CAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 717
Query 806 GGAAGTAGCT 815
||||||||||
Sbjct 718 GGAAGTAGCT 727
> Ahg940645 jgi|Araly1|940645|scaffold_601189.1
Length=568
Score = 311 bits (168), Expect = 9e-84
Identities = 198/212 (93%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 358 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 417
Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 477
Query 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805
|||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||
Sbjct 478 TAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 536
Query 806 GGAAGTAGCTAAGCCAGTTCTCCCCAGAGTGA 837
|||||||||| ||||||||||||| |||||||
Sbjct 537 GGAAGTAGCTGAGCCAGTTCTCCCTAGAGTGA 568
Score = 196 bits (106), Expect = 3e-49
Identities = 122/130 (94%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 41 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCAAGAAGAACGC 100
Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454
|||||||||||||| || |||||||||| | |||||||||||||||||||| ||||||||
Sbjct 101 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 160
Query 455 GGAAATGGTA 464
||||||||||
Sbjct 161 GGAAATGGTA 170
> Ahg898848 jgi|Araly1|898848|Al_scaffold_0005_2814
Length=372
Score = 183 bits (99), Expect = 2e-45
Identities = 119/129 (92%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394
||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| ||
Sbjct 72 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 131
Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454
|||||||||||||| || |||||||||| | |||||||||||||||||||| ||||||||
Sbjct 132 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 191
Query 455 GGAAATGGT 463
|||||||||
Sbjct 192 GGAAATGGT 200
> Ahg353479 jgi|Araly1|353479|fgenesh1_pg.C_scaffold_7000652
Length=570
Score = 183 bits (99), Expect = 2e-45
Identities = 109/114 (96%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 236 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 295
Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 741
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 349
Score = 134 bits (72), Expect = 2e-30
Identities = 84/90 (93%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 817 AGCCAGTTCTCCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCA 876
||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 353 AGCCAGTTCTCCCTAGAGTGAAAGAAAATAATTTCGGTATTTCTTCTATATCACATACCA 412
Query 877 ACCAGCCAACCGCAGAAATTTTGCAGATTT 906
|||||||||||| |||||||||||||||||
Sbjct 413 ACCAGCCAACCGTAGAAATTTTGCAGATTT 442
> Ahg341028 jgi|Araly1|341028|fgenesh1_pg.C_scaffold_3000791
Length=570
Score = 183 bits (99), Expect = 2e-45
Identities = 109/114 (96%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 236 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 295
Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 741
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 349
Score = 134 bits (72), Expect = 2e-30
Identities = 84/90 (93%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 817 AGCCAGTTCTCCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCA 876
||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 353 AGCCAGTTCTCCCTAGAGTGAAAGAAAATAATTTCGGTATTTCTTCTATATCACATACCA 412
Query 877 ACCAGCCAACCGCAGAAATTTTGCAGATTT 906
|||||||||||| |||||||||||||||||
Sbjct 413 ACCAGCCAACCGTAGAAATTTTGCAGATTT 442
> Ahg487627 jgi|Araly1|487627|fgenesh2_kg.6__761__AT5G07940.1
Length=5136
Score = 163 bits (88), Expect = 3e-39
Identities = 122/137 (89%), Gaps = 7/137 (5%)
Strand=Plus/Minus
Query 1112 TTAGAACCGTAGCTGTGTAAACAAAAATTGCCACTTACTGCTATATTTTAGCTTGTTTAC 1171
|||||| |||||||||||||| |||||||||||||| ||||||| || ||||||||
Sbjct 5136 TTAGAATAGTAGCTGTGTAAAC-AAAATTGCCACTTATTGCTATA--TT---TTGTTTAC 5083
Query 1172 TGGATTTCTTACTGGGG-CACTGTACTGAGCGATATTTCTTTACTAAAGTATACAAATGG 1230
|||||| | || ||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 5082 TGGATTACCTATTGGGGTTACTGTACTGAACGATATTTCTTTACTAAAGTATACAAATGG 5023
Query 1231 ATTTAACTTACAATGTT 1247
|||||||||||||||||
Sbjct 5022 ATTTAACTTACAATGTT 5006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5