BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07950.1 Length=1247 Score E Sequences producing significant alignments: (Bits) Value Ahg325400 jgi|Araly1|325400|fgenesh1_pm.C_scaffold_6000620 1301 0.0 Ahg906228 jgi|Araly1|906228|Al_scaffold_0003_3356 449 2e-125 Ahg905958 jgi|Araly1|905958|Al_scaffold_0003_3086 414 6e-115 Ahg912755 jgi|Araly1|912755|Al_scaffold_0001_3009 403 1e-111 Ahg911467 jgi|Araly1|911467|Al_scaffold_0001_1721 403 1e-111 Ahg900312 jgi|Araly1|900312|Al_scaffold_0004_962 403 1e-111 Ahg940645 jgi|Araly1|940645|scaffold_601189.1 311 9e-84 Ahg898848 jgi|Araly1|898848|Al_scaffold_0005_2814 183 2e-45 Ahg353479 jgi|Araly1|353479|fgenesh1_pg.C_scaffold_7000652 183 2e-45 Ahg341028 jgi|Araly1|341028|fgenesh1_pg.C_scaffold_3000791 183 2e-45 Ahg487627 jgi|Araly1|487627|fgenesh2_kg.6__761__AT5G07940.1 163 3e-39 > Ahg325400 jgi|Araly1|325400|fgenesh1_pm.C_scaffold_6000620 Length=864 Score = 1301 bits (704), Expect = 0.0 Identities = 791/834 (95%), Gaps = 2/834 (0%) Strand=Plus/Plus Query 168 TCTCCGGGGAGTTTTTCGTCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTT 227 ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 31 TCTCCGGCGAGTTTATCATCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTT 90 Query 228 AGGAACCAGTGGTCTAACCTGTCGAATTGTCGGCAACAGTGGATCGTCGCTTGTTCTGCG 287 ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 91 AGGAATCAGTGGTCTAAACTGTCGAATTGTCGACAACAGTGGATCGTCGCTTGTTCTGCG 150 Query 288 GGAAGATCTCACGCTACTTTGCTAGTCAATTCGTATCTGTCACAAAAGTATATGCCAATG 347 ||||||||||||||||||| ||| |||||||||||| | || |||||||||||||||||| Sbjct 151 GGAAGATCTCACGCTACTTCGCTCGTCAATTCGTATTTATCTCAAAAGTATATGCCAATG 210 Query 348 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGCTTTGAAGAAGCTG 407 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 211 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATTAAGAAGAAAGCTTTGAAGAAGCTG 270 Query 408 TTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAAGGAAATGGTAGCT 467 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 271 TTTAAGCAACAGAGTTCCTATCGAATCAAGCTTTTATCGTCGTACAAGGAAATGGTAGCT 330 Query 468 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACACGAAGCTGA-GTAC 526 |||||||||||||||||| ||||||||||||||||||||||||| ||||| || | |||| Sbjct 331 GTTGTTGTTGAGATGGTATATGCAAGCAGATCTCTGAGATGTTATACGAAACT-AGGTAC 389 Query 527 CGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATGCTGGAGATTGCGG 586 |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| || Sbjct 390 CGGGTCACTTGTACAGTTCTCTGGCTCTAAGGAAGATTCAAGTGATGCTGGAGATTGTGG 449 Query 587 TGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGAGGAGCT 646 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 450 TGGCATCCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGGGGAGCT 509 Query 647 TGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGCTCATAATGGAACTGATCTC 706 |||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 510 TGTGGAAATGTTCAAACGCGAAGTAATGGTAAAGAGATTGCTCTTAATGGAACTGATCTC 569 Query 707 TTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGTCAGATGAGCTTTACCATGG 766 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 570 TTTAAGCACTGAAGTTCCTCAACCCGTCAACAACAGTTGGTCAGATGAGCTTTACCATGG 629 Query 767 AGAATTTGATCATCTCACCAAATGTTCTTTATATTCTATGGAAGTAGCTAAGCCAGTTCT 826 ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 630 GGAATTTGATCATCTCACCAAATGTTCTTTATATTCCATGGAAGTAGCTGAGCCAGTTCT 689 Query 827 CCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCAACCAGCCAAC 886 ||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||| Sbjct 690 CCCCAGAGTGAAAGAAAATAATCTCGGTATTTCTTCTATATCACAAACCAACCAGCCAAC 749 Query 887 CGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAAGTAAACATCGACACTCA 946 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 750 CGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAGGTAAACATTGACACTCA 809 Query 947 TAGGGTGGATGAGATATTAGCTTTGGTTGGGGAAGAAATTAGAGTCACCTTCTA 1000 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 810 TAGGGTGGATGAGATATTAGCTTTGGTCGGGGAAGAAACTAGAGTCACCTTCTA 863 Score = 54.7 bits (29), Expect = 2e-06 Identities = 33/35 (94%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 90 ATGAGCATCTCGCAGTTTCCGCCGCCTGCTTCTCC 124 ||||| |||||||||||||||||||||||||||| Sbjct 1 ATGAGTGTCTCGCAGTTTCCGCCGCCTGCTTCTCC 35 > Ahg906228 jgi|Araly1|906228|Al_scaffold_0003_3356 Length=375 Score = 449 bits (243), Expect = 2e-125 Identities = 304/334 (91%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 348 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGCTTTGAAGAAGCTG 407 |||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||| ||| Sbjct 1 ATGGAGCTTGGTGTGTCGAGTGACATGTTTGATATCAAGAAGAACGCTTTGAAGAACCTG 60 Query 408 TTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAAGGAAATGGTAGCT 467 | || |||||||||| | |||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 TCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAAGGAAATGGTAGCT 120 Query 468 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACACGAAGCTGA-GTAC 526 |||||||||||||||||||||||||||||||||||||||||||| || ||| | | |||| Sbjct 121 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATACCAAGAT-ACGTAC 179 Query 527 CGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATGCTGGAGATTGCGG 586 || ||||||| ||||||||| | || ||||||||||||| | ||||||||||||||| || Sbjct 180 CGAGTCACTTGTACAGTTCTTTTGCTCTAAGGAAGATTCCAGTGATGCTGGAGATTGTGG 239 Query 587 TGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGAGGAGCT 646 |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 240 TGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTGAGAAGATGGCTGAGGAGTT 299 Query 647 TGTGGAGATGTTCAAACGCGAAGTAATGCTAAAG 680 |||||||||||||| |||| |||||||| ||||| Sbjct 300 TGTGGAGATGTTCATACGCCAAGTAATGATAAAG 333 > Ahg905958 jgi|Araly1|905958|Al_scaffold_0003_3086 Length=564 Score = 414 bits (224), Expect = 6e-115 Identities = 271/294 (92%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394 ||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| || Sbjct 93 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 152 Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454 |||||||||||||| || |||||||||| | |||||||||||||||||||| |||||||| Sbjct 153 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 212 Query 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 213 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 272 Query 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573 ||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| ||||| Sbjct 273 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 331 Query 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627 |||||||||| |||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 332 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTG 385 Score = 207 bits (112), Expect = 1e-52 Identities = 123/128 (96%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 437 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 496 Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCC-TCAACCCATCAACAACAGTTGG 746 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 497 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCCTCAACCCATCAACAACAGTTGG 556 Query 747 TCAGATGA 754 |||||||| Sbjct 557 TCAGATGA 564 > Ahg912755 jgi|Araly1|912755|Al_scaffold_0001_3009 Length=729 Score = 403 bits (218), Expect = 1e-111 Identities = 269/294 (91%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394 ||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| || Sbjct 195 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 254 Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454 |||||||||||||| || |||||| ||| | |||||||||||||||||||| |||||||| Sbjct 255 TTTGAAGAAGCTGTCTAAGCAACATAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 314 Query 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 315 GGAAATGGTAGCCGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 374 Query 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573 ||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| ||||| Sbjct 375 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 433 Query 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627 |||||||||| |||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 434 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTG 487 Score = 292 bits (158), Expect = 3e-78 Identities = 180/190 (95%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 539 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 598 Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 658 Query 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805 ||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| || Sbjct 659 CAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 717 Query 806 GGAAGTAGCT 815 |||||||||| Sbjct 718 GGAAGTAGCT 727 > Ahg911467 jgi|Araly1|911467|Al_scaffold_0001_1721 Length=627 Score = 403 bits (218), Expect = 1e-111 Identities = 269/294 (91%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394 ||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| || Sbjct 93 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 152 Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454 |||||||||||||| || |||||||||| | |||||||||||||||||||| |||||||| Sbjct 153 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 212 Query 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 213 GGAAATGGTAGCCGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 272 Query 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573 ||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| ||||| Sbjct 273 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 331 Query 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627 |||||||||| |||||||| ||||| |||||||| |||||||||||| |||||| Sbjct 332 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTCTGGAATGTCTCTACATTTG 385 Score = 292 bits (158), Expect = 3e-78 Identities = 180/190 (95%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 437 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 496 Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 556 Query 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805 ||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| || Sbjct 557 CAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 615 Query 806 GGAAGTAGCT 815 |||||||||| Sbjct 616 GGAAGTAGCT 625 > Ahg900312 jgi|Araly1|900312|Al_scaffold_0004_962 Length=729 Score = 403 bits (218), Expect = 1e-111 Identities = 269/294 (91%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394 ||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| || Sbjct 195 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 254 Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454 |||||||||||||| || |||||| ||| | |||||||||||||||||||| |||||||| Sbjct 255 TTTGAAGAAGCTGTCTAAGCAACATAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 314 Query 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 315 GGAAATGGTAGCCGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 374 Query 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573 ||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| ||||| Sbjct 375 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 433 Query 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627 |||||||||| |||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 434 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTG 487 Score = 292 bits (158), Expect = 3e-78 Identities = 180/190 (95%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 539 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 598 Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 658 Query 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805 ||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| || Sbjct 659 CAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 717 Query 806 GGAAGTAGCT 815 |||||||||| Sbjct 718 GGAAGTAGCT 727 > Ahg940645 jgi|Araly1|940645|scaffold_601189.1 Length=568 Score = 311 bits (168), Expect = 9e-84 Identities = 198/212 (93%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 358 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 417 Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 477 Query 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805 |||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| || Sbjct 478 TAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 536 Query 806 GGAAGTAGCTAAGCCAGTTCTCCCCAGAGTGA 837 |||||||||| ||||||||||||| ||||||| Sbjct 537 GGAAGTAGCTGAGCCAGTTCTCCCTAGAGTGA 568 Score = 196 bits (106), Expect = 3e-49 Identities = 122/130 (94%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 41 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCAAGAAGAACGC 100 Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454 |||||||||||||| || |||||||||| | |||||||||||||||||||| |||||||| Sbjct 101 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 160 Query 455 GGAAATGGTA 464 |||||||||| Sbjct 161 GGAAATGGTA 170 > Ahg898848 jgi|Araly1|898848|Al_scaffold_0005_2814 Length=372 Score = 183 bits (99), Expect = 2e-45 Identities = 119/129 (92%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394 ||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| || Sbjct 72 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 131 Query 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454 |||||||||||||| || |||||||||| | |||||||||||||||||||| |||||||| Sbjct 132 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 191 Query 455 GGAAATGGT 463 ||||||||| Sbjct 192 GGAAATGGT 200 > Ahg353479 jgi|Araly1|353479|fgenesh1_pg.C_scaffold_7000652 Length=570 Score = 183 bits (99), Expect = 2e-45 Identities = 109/114 (96%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 236 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 295 Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 741 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 296 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 349 Score = 134 bits (72), Expect = 2e-30 Identities = 84/90 (93%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 817 AGCCAGTTCTCCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCA 876 ||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||| Sbjct 353 AGCCAGTTCTCCCTAGAGTGAAAGAAAATAATTTCGGTATTTCTTCTATATCACATACCA 412 Query 877 ACCAGCCAACCGCAGAAATTTTGCAGATTT 906 |||||||||||| ||||||||||||||||| Sbjct 413 ACCAGCCAACCGTAGAAATTTTGCAGATTT 442 > Ahg341028 jgi|Araly1|341028|fgenesh1_pg.C_scaffold_3000791 Length=570 Score = 183 bits (99), Expect = 2e-45 Identities = 109/114 (96%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 236 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 295 Query 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 741 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 296 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 349 Score = 134 bits (72), Expect = 2e-30 Identities = 84/90 (93%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 817 AGCCAGTTCTCCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCA 876 ||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||| Sbjct 353 AGCCAGTTCTCCCTAGAGTGAAAGAAAATAATTTCGGTATTTCTTCTATATCACATACCA 412 Query 877 ACCAGCCAACCGCAGAAATTTTGCAGATTT 906 |||||||||||| ||||||||||||||||| Sbjct 413 ACCAGCCAACCGTAGAAATTTTGCAGATTT 442 > Ahg487627 jgi|Araly1|487627|fgenesh2_kg.6__761__AT5G07940.1 Length=5136 Score = 163 bits (88), Expect = 3e-39 Identities = 122/137 (89%), Gaps = 7/137 (5%) Strand=Plus/Minus Query 1112 TTAGAACCGTAGCTGTGTAAACAAAAATTGCCACTTACTGCTATATTTTAGCTTGTTTAC 1171 |||||| |||||||||||||| |||||||||||||| ||||||| || |||||||| Sbjct 5136 TTAGAATAGTAGCTGTGTAAAC-AAAATTGCCACTTATTGCTATA--TT---TTGTTTAC 5083 Query 1172 TGGATTTCTTACTGGGG-CACTGTACTGAGCGATATTTCTTTACTAAAGTATACAAATGG 1230 |||||| | || ||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 5082 TGGATTACCTATTGGGGTTACTGTACTGAACGATATTTCTTTACTAAAGTATACAAATGG 5023 Query 1231 ATTTAACTTACAATGTT 1247 ||||||||||||||||| Sbjct 5022 ATTTAACTTACAATGTT 5006 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46586204574 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5