BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07960.1
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487629 jgi|Araly1|487629|fgenesh2_kg.6__763__AT5G07960.1 743 0.0
> Ahg487629 jgi|Araly1|487629|fgenesh2_kg.6__763__AT5G07960.1
Length=570
Score = 743 bits (402), Expect = 0.0
Identities = 528/584 (90%), Gaps = 27/584 (5%)
Strand=Plus/Plus
Query 20 ATAGAATCTCTAAGAAGAA-TTACAGTAGATCAGATATATATTTACCAATCGGAGCTTCA 78
|||||||||||||||| || |||||||||||||| | || |||||| |||||||||| |
Sbjct 1 ATAGAATCTCTAAGAACAATTTACAGTAGATCAG--AGAT-TTTACC-ATCGGAGCTTTA 56
Query 79 GAGAGATCCAAAGAGAGAGATTGAGGATGTCTCACAGTCACGGGAACGCTTCGTCGGTGA 138
||||||| | ||||||||| ||||||||||||||||||||| ||||||||||||| ||
Sbjct 57 GAGAGAT--ACAGAGAGAGA--GAGGATGTCTCACAGTCACGGAAACGCTTCGTCGGCGA 112
Query 139 ACGATCCACGGCAGCCTTCGGCGGC-AAAGCCTTACATTCCACGGCCTGTAGCGCCGGAG 197
|||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 113 ACGATCCACGGCTGCCTTCGGCGGCGAAA-CCTTACACTCCACGGCCTGTAGCGCCGGAG 171
Query 198 GATCTTCCCGTTGACTACTCCGGATTCATCGCCGTTATCCTCGGCGTCTCCGGCGTTATG 257
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 172 GATCTTCCCGTTGACTACTCCGGATTTATCGCCGTTATCCTCGGCGTCTCCGGCGTTATG 231
Query 258 TTCAGGTACAAGATATGCTCGTGGCTTGCAATTATATTCTGTGCACAATCTCTGGCCAAC 317
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 232 TTCAGGTACAAGATATGCTCGTGGCTTGCAATTATATTCTGTGCACAATCTCTCGCCAAC 291
Query 318 ATGAGGAACTTGGAAAATGATTTAAAGCAGATCTCCATGGCTATGATGTTTGCTATAATG 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ATGAGGAACTTGGAAAATGATTTAAAGCAGATCTCCATGGCTATGATGTTTGCTATAATG 351
Query 378 GGATTGGTTACAAACTACTTAGGGCCTAACAGACCCGCGACAAAGAAATAATCCTCATGT 437
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||
Sbjct 352 GGATTGGTTACAAACTACTTAGGGCCTAATAGACCCGCGACGAAGAAATGATCCTCAAGT 411
Query 438 CTTAAGAG--TAGT-A--TGCt-t--t--t-ttttGATAAACCTTGTATGGCTCTTGTTT 486
|| ||||| || | | || | | | |||| || |||||||| ||| |||| |||
Sbjct 412 CT-AAGAGGGTAACCAAATACTCTGCTCGTCTTTT-ATCAACCTTGTTTGGTTCTTCTTT 469
Query 487 CCGCACCAGAGATTGCTAGTGGTTTGTCTTTGTGTTTTCGACTCTCTAATCCTTGAGTAG 546
||||||||||||||| ||||| ||| | ||||||||| ||||||||||||| | |||||
Sbjct 470 CCGCACCAGAGATTGTTAGTGATTTATTTTTGTGTTT-CGACTCTCTAATC-T-GAGTAA 526
Query 547 CAAACTAGAACCTTGAGCTCTTGCTCATTTGTGGAGTTCAAAGA 590
|||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 527 CAAACTAGAACCCTGAGCTCTTGTTCATTTGTGGAGTTCTAAGA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23216856453
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5