BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07990.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487632 jgi|Araly1|487632|fgenesh2_kg.6__766__AT5G07990.1 2630 0.0
> Ahg487632 jgi|Araly1|487632|fgenesh2_kg.6__766__AT5G07990.1
Length=1796
Score = 2630 bits (1424), Expect = 0.0
Identities = 1686/1807 (93%), Gaps = 40/1807 (2%)
Strand=Plus/Plus
Query 1 GTTTTGT-TTCCTCATTTTTCACTTACCATTC-AA---ACCCAACACT-ATGGCAACTCT 54
||||||| || ||||||| ||||||||||||| || |||||||| | ||| |||||||
Sbjct 1 GTTTTGTATT-CTCATTTATCACTTACCATTCAAACCTACCCAACA-TAATGACAACTCT 58
Query 55 ATTTCTCACAATCCTCCTAGCCACTGTCCTC-T--TCCTCATCCTCCGTATCTTCTCTCA 111
|||||||||||||| ||||||||||||||| | ||||| |||||||| | |||||||
Sbjct 59 CTTTCTCACAATCCTTCTAGCCACTGTCCTCTTCCTCCTCCTCCTCCGTGTATTCTCTCT 118
Query 112 CCGTCGCAACCGCAGCCACAACAACCGTCTTCCACCGGGGCCAAACCCATGGCCCATCAT 171
||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 119 CCGGCGCAACCGCAGCCACACCAACCGTCTTCCACCGGGCCCAAACCCATGGCCCATCAT 178
Query 172 CGGAAACCTCCCTCACATGGGCACTAAGCCTCATCGAACCCTTTCCGCCATGGTTA-CTA 230
|||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |||
Sbjct 179 CGGAAACCTCCCTCACATGGGCCCTAAGCCTCATCGAACCCTTGCCGCCATGG-TATCTA 237
Query 231 CTTACGGCCCTATCCTCCACCTCCGACTAGGGTTCGTAGACGTCGTGGTCGCCGCTTCTA 290
|||||||||||||||||||||||||| |||| ||||| |||||||||||||| || ||||
Sbjct 238 CTTACGGCCCTATCCTCCACCTCCGATTAGGTTTCGTCGACGTCGTGGTCGCTGCCTCTA 297
Query 291 AATCCGTGGCCGAGCAGTTCTTGAAAATACACGACGCCAATTTCGCTAGCCGACCACCAA 350
|||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 298 AATCTGTGGCCGAGCAGTTCCTGAAAATCCACGACGCCAATTTCGCTAGCCGACCACCAA 357
Query 351 ACTCAGGAGCTAAACACATGGCATATAACTATCAAGATCTTGTCTTTGCACCTTACGGAC 410
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACTCAGGAGCCAAACACATGGCATATAACTATCAAGATCTTGTCTTTGCACCTTACGGAC 417
Query 411 ACCGATGGAGACTGTTGAGAAAGATTAGTTCTGTTCATCTATTTTCAGCTAAAGCTCTCG 470
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 418 AACGATGGAGACTGTTGAGGAAGATTAGTTCTGTTCATCTATTTTCAGCTAAAGCTCTAG 477
Query 471 AAGATTTCAAACATGTTCGACAGGAAGAGGTTGGAACGCTAACGCGGGAGCTAGTGCGTG 530
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||
Sbjct 478 AAGATTTCAAACATGTTCGACAGGAAGAGGTTGGAACGCTCACGTGGGAACTAGCGCGTG 537
Query 531 TTGGCACGAAACCCGTGAATTTAGGCCAGTTGGTGAACATGTGTGTAGTCAACGCTCTAG 590
| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 538 TAGGCACGAAACCAGTGAATTTAGGTCAGTTGGTTAACATGTGTGTAGTCAACGCGCTAG 597
Query 591 GACGAGAGATGATCGGACGGCGATTGTTCGGCGCCGACGCCGATCATAAAGCTGACGAGT 650
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 GACGAGAGATGATCGGGCGGCGACTGTTCGGCGCCGACGCCGATCATAAAGCTGACGAGT 657
Query 651 TTCGATCAATGGTGACGGAAATGATGGCTCTCGCCGGAGTATTCAACATCGGAGACTTCG 710
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 658 TTCGATCGATGGTGACGGAAATGATGGCTCTCGCCGGAGTATTTAACATCGGAGATTTCG 717
Query 711 TGCCGTCACTTGATTGGTTAGATTTACAAGGCGTCGCTGGTAAAATGAAACGGCTTCACA 770
||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 718 TGCCGTCGCTGGATTGGTTAGATTTTCAAGGAGTCGCTGGTAAAATGAAACGGCTTCACA 777
Query 771 AGAGATTCGACGCTTTTCTATCGTCGATTTTGAAAGAGCACGAAATGAACGGTCAAGATC 830
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 AAAGATTCGACGCTTTTCTATCGTCGATTTTGGAAGAGCACGAAATGAACGGTCAAGATC 837
Query 831 AAAAGCATACAGATATGCTTAGCACTTTAATCTCCCTTAAAGGAACTGATCTTGACGGTG 890
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 AAAAGCATACAGATATGCTTAGCACTTTAATCTCGCTTAAAGGAACTGATCTTGACGGTG 897
Query 891 ACGGAGGAAGCTTAACGGATACTGAGATTAAAGCCTTGCTATTGAACATGTTCACAGCTG 950
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 898 ACGGAGGAAGTTTAACGGATACTGAGATTAAAGCCTTGCTATTGAATATGTTCACAGCTG 957
Query 951 GAACTGACACGTCAGCAAGTACGGTGGACTGGGCTATAGCTGAACTTATCCGTCACCCGG 1010
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 958 GAACTGACACGTCAGCAAGTACGGTGGACTGGGCTATAGCTGAGCTAATCCGTCACCCTG 1017
Query 1011 ATATAATGGTTAAAGCCCAAGAAGAACTTGATAT-TGTTGTGGGCCGTGACAGGCCTGTT 1069
|||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 1018 ATATAATGGTTAAAGCCCAAGAAGAACTTGAT-TCTGTTGTGGGCCGTAACAGGCCTGTT 1076
Query 1070 AATGAATCAGACATCGCTCAGCTTCCTTACCTTCAGGCGGTTATCAAAGAGAATTTCAGG 1129
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AACGAATCAGACATCTCTCAGCTTCCTTACCTTCAGGCGGTTATCAAAGAGAATTTCAGG 1136
Query 1130 CTTCATCCACCAACACCACTCTCGTTACCACACATCGCGTCAGAGAGCTGTGAGATCAAC 1189
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1137 CTTCATCCACCAACACCACTCTCGTTACCACACATCGCATCAGAGAGCTGTGAGATCAAC 1196
Query 1190 GGCTACCATATCCCGAAAGGATCGACTCTATTGACGAACATATGGGCCATAGCCCGTGAC 1249
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1197 CGCTACCATATCCCTAAAGGATCGACGCTATTGACGAACATATGGGCCATAGCCCGTGAC 1256
Query 1250 CCGGATCAATGGTCCGACCCGTTAGCATTTAAACCCGAGAGATTCTTACCCGGTGGTGAA 1309
|||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||
Sbjct 1257 CCGGATCAATGGTCCGACCCGTTAACGTTCAAACCCGAGAGATTTTTACCCGGTGGTGAA 1316
Query 1310 AAATCCGGCGTTGATGTGAAAGGAAGCGATTTCGAGCTAATACCGTTCGGAGCTGGGAGG 1369
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1317 AAATCCGGCGTTGATGTGAAAGGAAGCGATTTCGAGCTTATACCGTTCGGAGCTGGGAGG 1376
Query 1370 AGAATCTGTGCCGGTTTAAGTTTAGGGTTACGTACGATTCAGTTTCTTACGGCGACGTTG 1429
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1377 AGAATCTGTGCCGGTTTAAGTTTAGGGTTACGTACGATTCAGTTTCTGACGGCGACGTTG 1436
Query 1430 GTTCAAGGATTTGATTGGGAATTAGCTGGAGG-AGTTACGCCGGAGAAGCTGAATATGGA 1488
|||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 1437 GTTCAAGGATTTGATTGGGAATTAGCCGGAGGTA-TTACGCCGGAGAAGCTGAATATGGA 1495
Query 1489 GGAGAGTTATGGGCTTACACTGCAAAGAGCGGTTCCTTTGGTGGTACATCCTAAGCCAAG 1548
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1496 GGAGAGTTATGGGCTTACTTTGCAAAGAGCGGTTCCTTTGGTGGTGCATCCTAAGCCAAG 1555
Query 1549 GTTGGCTCCGAACGTTTATGGACTCGGGTCGGGTTAAAATTTAACT-TTGCTTCTTGGAC 1607
|||||||||||| ||||||||| ||||||||||||||||| ||| | |||||||| || |
Sbjct 1556 GTTGGCTCCGAATGTTTATGGAATCGGGTCGGGTTAAAATCTAA-TGTTGCTTCTCGGCC 1614
Query 1608 AAGGTATATGGCTTGCACGAAAATAAAGTTTTAAAACAGCGTAGTTTGATCCGGAGTTAG 1667
|||| ||| |||||||||||||||||| | ||||||| ||||||||||| ||||
Sbjct 1615 AAGGCATAGGGCTTGCACGAAAATAAA-----A---CAGCGTAATTTGATCCGGAATTAG 1666
Query 1668 CTTTATGTAAGAACGTGTA--A-CGCCAAATCAAGTCATTATTAAATATTGT-G--AGTT 1721
||| ||||||||||||||| | ||||||||||||| ||||||||||||||| | ||||
Sbjct 1667 CTTAATGTAAGAACGTGTAGTAACGCCAAATCAAGTAATTATTAAATATTGTTGTGAGTT 1726
Query 1722 GTTTGTAACCTATA-TATAA--AT----CTTGAAGAGGAAGATTTCAGAAATCTTGAATA 1774
|||||||||||||| | ||| || |||||||||||||||||| |||||||||||||
Sbjct 1727 GTTTGTAACCTATAATGTAATTATTTATCTTGAAGAGGAAGATTTCTGAAATCTTGAATA 1786
Query 1775 TGTTTTA 1781
|||||||
Sbjct 1787 TGTTTTA 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5