BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08000.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350051 jgi|Araly1|350051|fgenesh1_pg.C_scaffold_6000644 948 0.0
> Ahg350051 jgi|Araly1|350051|fgenesh1_pg.C_scaffold_6000644
Length=585
Score = 948 bits (513), Expect = 0.0
Identities = 561/585 (96%), Gaps = 0/585 (0%)
Strand=Plus/Plus
Query 131 ATGGCTCCTCTGGTTCTCTACCTTCTCACTCTCCTCATGGCTGGCCATACCAGTGCCTCA 190
|||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCTGCTCTGGTTCTCTACCTTCTCAGTCTCCTCATGGCTGGCCATTCCAGTGCCTCA 60
Query 191 TGGTGTGTGTGCAAAACAGGGCTGAGTGACTCAGTGCTACAAAAGACATTAGACTATGCT 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGTGTGTGTGCAAAACAGGGCTGAGTGACTCAGTGCTACAAAAGACATTAGACTATGCT 120
Query 251 TGTGGAAATGGAGCTGACTGTAACCCAACTCACCCAAAAGGCTCTTGCTTCAATCCTGAC 310
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 121 TGTGGAAATGGAGCTGACTGTAACCCAACTCACCCAAAAGGCTCTTGCTTTAACCCTGAC 180
Query 311 AATGTTAGGGCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAAGGTCAAGCT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATGTTAGGGCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAAGGTCAAGCT 240
Query 371 TCTGAGTCTTGTAACTTCACTGGTACTGCCACTCTTACCACCACCGATCCCAGCTATACA 430
||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 241 GCTGAGTCTTGTAACTTCACTGGTTCTGCAACTCTTACCACCACTGATCCCAGCTATACA 300
Query 431 GGATGTGCATTCCCTTCTAGTGCTAGTGGTTCTAGTGGAAGCGGTAGCACCACCGTGACG 490
||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 301 GGATGTGCATTCCCTTCTACTGCTAGTGGTTGTAGTGGAAGCAGTAGCACCACCGTGACG 360
Query 491 CCAGGCAAAAACAGTCCAAAAGGAAGCAACAGCATCACCACATTTCCCGGCGGAAACAGT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAGGCAAAAACAGTCCAAAAGGAAGCAACAGCATCACCACATTTCCCGGCGGAAACAGT 420
Query 551 CCATACTCTGGCACACCATCCACCGGCTTATTAGGAGGCAATATCACTGATGCTACTGGA 610
|||||| | ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 421 CCATACACCGGCACACCATCCACCGGGTTATTAGGAGGCAATGTCACTGATGCTACTGGA 480
Query 611 ACCGGGTTGAACCCGGATTACTCAACCGAAAGCAGTGGATTTGCGCTCTATTACTCCAAC 670
|||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 481 ACCGGGTTTAACCCAGATTACTCAACCGAAAGCAGTGGATTCGCGCTCCATTACTCCAAC 540
Query 671 AACCTTCTGTTAACCGGCTTTTGTTCTCTCGTGATGATGCTCTGA 715
|||||| |||| |||||||||||||||||| |||||||||| |||
Sbjct 541 AACCTTATGTTTACCGGCTTTTGTTCTCTCTTGATGATGCTTTGA 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5