BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08010.1
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487634 jgi|Araly1|487634|fgenesh2_kg.6__768__AT5G08010.1 2584 0.0
Ahg496258 jgi|Araly1|496258|fgenesh2_kg.8__2074__AT5G61040.1 503 2e-141
> Ahg487634 jgi|Araly1|487634|fgenesh2_kg.6__768__AT5G08010.1
Length=1814
Score = 2584 bits (1399), Expect = 0.0
Identities = 1691/1826 (93%), Gaps = 44/1826 (2%)
Strand=Plus/Plus
Query 1 ATGGATCTATGGTTAATCGCAGCTACTGCTGCTACAGGATATATAACCAAGCATTTGCGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGATCTATGGTTAATCGCAGCTACTGCTGCTACAGGATATATAACCAAGCATTTGCAA 60
Query 61 AATGTATCCAAAGGTAAATCTTCTTCTGAAGATTTGACTAATGTGAAGCTAGAGTCACCG 120
|||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 61 AATGTATCAAAAGGTAAACCTTCTTCTGAAGATTTGACTAATGTGAAGCTTGAGTCCCCG 120
Query 121 AGATGCTTGGCTAGTAATGTAGTAAGAGTTAAAAAACCAAAAGAAGAAAACTTTGAGGAT 180
|||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 AGATACTTGGCTAGTAATGTAGTAAGAGTCAAGAAACCAAAAGAAGAAAACTTTGAGGAT 180
Query 181 TGCTTAAATGGGGAAACTCTTGATCTATATGAATGTGGCAATGCATATGGAGTGGAAGTA 240
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TGCTTTAATGGGGAAACTCTTGATCTATATGAATGTGGCAATGCATATAAAGTGGAAGTA 240
Query 241 GCTTCGAATAATGAGGAGGATTTGGGATATGATGATGAGATTCGTTCAGGTTCTTTTGGG 300
| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GATTCGAGTAATGAGGAGAATTTGGGATATAATGATGAGATTCGTTCAGGTTCTTTTGGG 300
Query 301 AACAGAGCGTTTCTTAGGAGAAATCAGTGTCCTATCAAGCCTTTTTCTTTGGAGAAAAGC 360
|||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 301 AACAGAGCGTTTCTTAGGAGGAATCAGCGTCTTATCAAGCCTTTTTCTTTGGAGAAAAGC 360
Query 361 ATTATGTCTCGGTTACATAGAGAGAAAATATCCATGGAGGAATATATGCGTAGTCCGTTT 420
| |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 361 GTAATGTCTCGGTTACATAGAGAGAAAGTGTCCATGGAGGAATATATGCGTAGTCTGTTT 420
Query 421 CCATCACCTTGTGGTTCAGTTTCGAGGCCCTTGCTTGTTACTGATGGTACAAATGTAATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CCATCACCTTGTGGTTCAGTTTCGAGGCCCTTGCTTGTTACTGATGGTACAAAAGTAATT 480
Query 481 AGCAAGAATACTGGAGATTCTGTTAGCCAGCAAGTTTCGGAATGCGGGATTCCTCAGCTT 540
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 AGCAAGAAAACTGGAGATTCTGTTAGCCAGCAAGTTCCGGAATGCGGGATTCCTCAGCTT 540
Query 541 AGGAAGTTGAAATCTTCACTTCTTTACGCTAAAAGGGGAGTTGGAGATGCGAAGAGCGTG 600
||||||||| |||| |||||||| |||||||| |||||||||||| |||| |||| ||
Sbjct 541 AGGAAGTTGGAATCCTCACTTCTCTACGCTAAGAGGGGAGTTGGAAATGCTAAGACCGCA 600
Query 601 AGTAGAAGATCTGATAATGGGACTGGATCAAATGATCCAGTGTTAG-TGCTATGCGTTGG 659
|||||| ||||||||||||||| ||||||||||||| ||||||| | |||| ||||||||
Sbjct 601 AGTAGAGGATCTGATAATGGGATTGGATCAAATGATGCAGTGTT-GCTGCTTTGCGTTGG 659
Query 660 GATTTCAATTGGGATAATGTCATCATTTGTAGCTAACCAAACCGAACTAAACAAAGTCAG 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GATTTCAATTGGGATAATGTCATCATTTGTAGCAAACCAAACCGAACTAAACAAAGTCAG 719
Query 720 AGCAGAGTCAAAGCAGACAGAGAATTTGGGAAAAGAGTTAGAAGATGA---C------AT 770
||||||||||||||||||||||||||||| ||||||||| |||||||| | |
Sbjct 720 AGCAGAGTCAAAGCAGACAGAGAATTTGGTAAAAGAGTTTGAAGATGAGCTCAAGAGAAA 779
Query 771 ACAC-GA-TG---GTG-AA-A--A---ACAGTGTGATGAAAAGACAGCAGAGAATTCAGA 818
| || | || ||| || | | ||| || |||||||| || ||||||||||||
Sbjct 780 AGACTCATTGACAGTGAAAGATGATTTACACAATGGTGAAAAGAGAGTAGAGAATTCAGA 839
Query 819 ATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGAACTTGAAAGGCTGGAGATCAACAT 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGAACTTGAAAGGCTGGAGATCAACAT 899
Query 879 GATTTCCTCCAACATTGAGACAAAACTCTCAGATGTCTTTGAGCTGGAGCCAGA-TTTCG 937
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 900 GACTTCCTCCAACATTGAGACAAAACTCTCAGATGTCTTTGAGCTGGAGCCAGAGTTT-G 958
Query 938 AAGTAGAATTTGCGCAGGGTGAGCTGAGAGATGATCAGGTTGAAAGACAGCGTTTTGATG 997
||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 959 AAGTAGAATTTGCGCAGGGCGAGCTGATAGATGATCAGGTTGAAAGGCAGCGTTTTGATG 1018
Query 998 AAACCGTGTCCAACCAGGAACGGAGTAGCAATTCCACACCTGAATCAGGAAACTACATAG 1057
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 AAACCGAGTCCAACCAGGAATGGAGTAGCAATTCCACACCTGAATCAGGAAACTATATAG 1078
Query 1058 TCTCACCTCGTGAGTTAAGCTTGCGTCTGCTTGGAGTTATCAATTCATGCTATGAAAAAC 1117
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1079 TCTCACCTCGTGAGTTAAGCTTGCGTCTGCTTGGAGTTATCAATTCACGTTATGAAAAAC 1138
Query 1118 GGATAAAAGAACTTGAGAATGCCTTACAAGAGAGTCAGAGGAAAGTGGAGCAGCTGGTCA 1177
| |||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 GTATAAAAGAACTTGACAAAGCCTTACAAGAGAGTCAGATGAAAGTGGAGCAGCTGGTCA 1198
Query 1178 TAGAATCAGAGGAAAAGAAGAAACCATTGTCAAGGATTTGGGAAACCCATGAAGAGATGA 1237
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1199 TAGAATCAGAGGAAAAGAAGAAACCATTGTCAAGGATTTGGGAAACCAATGAAGTGATGA 1258
Query 1238 AATATAAGAGGGGCTCAAATCCTCCAGTTTCTGTAGCTCATATAGAGAAGAAACATAA-- 1295
|||| ||||| | |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1259 AATACAAGAGAGACTCAAATCTTCCAGTTTCTGTAGCTCATACCGAGAAGAATCATAATC 1318
Query 1296 -TCCTGCAGAGATCCAACCTCTGGTTATGACTTTAGAAGGGGAAGCACTTGACGCATTCA 1354
||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1319 CTCCTGCAGAGATCCAGCCTCTGGTTATGAATTTAGAAGGGGAAGCACTTGATGCATTCA 1378
Query 1355 ATGAATCTTACGAGGAACTGATGGATATTAACGACTATTCAGAAGAAGACGATTTACAAT 1414
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 ATGAATCTTACGAGGAACTGATGGATATTAACGACTATTCAGAAGAAGATTATTTACAAT 1438
Query 1415 GTGTGATGCAGGAGAATGAGCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTT 1474
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GTGAGATGCAGGAGAATGAGCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTT 1498
Query 1475 GGAGCCATAAAGATTACATAAAGGATTCTTCAAGAACTTCAGAGGATGTGAATTTGTCCA 1534
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1499 GGAGCCATAAAGATTACATAAAGGATTCTTCAAGAAGTTCAGAGGATGTGAATTTCTCCA 1558
Query 1535 TGCTGCAAGATCTACTTGGTCTGAGCGACgaagaagaagaagaagaagaTGAGATGGAGA 1594
||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1559 TGCTGCAAGATCTACTTGGTCTGAGTGACGAAGAAGAAGA---------TGAGATGGAGA 1609
Query 1595 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGGTCTTCTGCTGTGTTAAATG 1654
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1610 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGATCGTCTGCTGTGTTAAATG 1669
Query 1655 CCCAGAAAATGCTATTCCTCATGGAAGAAATACAACCAAATCTATAAAAA--GCATTTAC 1712
||||||| |||||||| ||||||||||||| | ||| ||||||||||||| ||||||||
Sbjct 1670 CCCAGAAGATGCTATTTCTCATGGAAGAAACAGAACAAAATCTATAAAAAAAGCATTTAC 1729
Query 1713 TCAAATTCTCATCATTTTTTGATGAAAGTATTACACGTCTCTAGTTAGTGT--GTGTGT- 1769
||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1730 TCAAATTCTTATCATTTAT-GATGAAAGTATTACACGTCTCTAGTTAGTGTTTGTGTGTG 1788
Query 1770 -AGATATGCAAAGATTGGTGTAACTT 1794
|||||||||||||||||||||||||
Sbjct 1789 TAGATATGCAAAGATTGGTGTAACTT 1814
> Ahg496258 jgi|Araly1|496258|fgenesh2_kg.8__2074__AT5G61040.1
Length=2394
Score = 503 bits (272), Expect = 2e-141
Identities = 725/930 (78%), Gaps = 86/930 (9%)
Strand=Plus/Plus
Query 795 TGAAAAGACAGCAGAGAATTCAGAATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGA 854
||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1396 TGAAAAGGCAGCTGACAATTCAGAATCTATAAGTAATATTGAAGCAGAGCTTGAAGCTGA 1455
Query 855 ACTTGAAAGGCTGGAGATCAACATGATTTCCTCCAACATTGAGACAAAACTCTCAGATGT 914
|||||||||||| || || ||||||| ||||||||||||||||||| |||||| ||| |
Sbjct 1456 ACTTGAAAGGCTAGAAATTAACATGAACTCCTCCAACATTGAGACAAGACTCTCTGATAT 1515
Query 915 CTTTGAGCTGGAGCCAGATT-TCGAAGTAGAATTTGCGCAGGGTGAGCTGAGAGATGATC 973
| ||| ||||||| |||| | || ||||||||||| |||||||| ||||||| |||||
Sbjct 1516 GATAGAGATGGAGCCGGATTGT-GAGGTAGAATTTGCACAGGGTGAACTGAGAGCTGATC 1574
Query 974 AGGTTGAAA--GACAGCGTTTTGATGAAACCGTGTCCAACCAGGAACGGAGTAGCAATTC 1031
|||| ||| || ||||||| |||||||| | ||||||||| || | ||| | || ||
Sbjct 1575 GGGTT-AAAGGGA-AGCGTTTAGATGAAACTGAGTCCAACCAAGACCCAAGTGGTAACTC 1632
Query 1032 CACACCTGAATCAGGAAACTA--CATAGTCTCACCTCGTGAGTTAAGCTTGC-GTCTGCT 1088
||||||||| ||||||||||| | | ||||||||||| || || ||||||| || |||
Sbjct 1633 CACACCTGAGTCAGGAAACTATGC-T-GTCTCACCTCGCGAATTGAGCTTGCGGT-TGCA 1689
Query 1089 TGGAGTTATCAATTCATG-CTATGAAAAACGGATAAAAGAACTTGAGAATGC-CTTACAA 1146
| ||||||||||||| | || ||| |||||||| |||| || |||| ||| | | |||
Sbjct 1690 TAAAGTTATCAATTCACGCCT-TGAGAAACGGATTGAAGAGCTCGAGACTGCAC-TCCAA 1747
Query 1147 GAGAGTCAGAGGAAA-GTGGAGCAGCTGGTCATAGAATCAGAGGA-AAAGAAGAAACCAT 1204
||||| || | |||| ||||||||||||||||| |||||||| || ||||||| |||
Sbjct 1748 GAGAGCCA-AAGAAAGGTGGAGCAGCTGGTCATGGAATCAGA-GAGCAAGAAGAGGTCAT 1805
Query 1205 TGTCAAGGATT-TGGGAAACCCATGAAGAGATGAAATATAAGAGGGGCTC-AA-ATCCTC 1261
||||||| || |||||||| | ||||| ||||| ||||||||| | ||| || || | |
Sbjct 1806 GGTCAAGG-TTATGGGAAACTCGTGAAGTGATGACATATAAGAGTGACTCGAATAT-C-C 1862
Query 1262 CAGTTTCTGTAGCTCATATAGAGAAGAAACATAATCCTGCAGAGATCCAACCTCTGGTTA 1321
||||| || | | | | | ||| || ||||||||| ||||| ||||| |||||||
Sbjct 1863 CAGTTGCTATTGAGC--ACA-CCAAG--AC-TAATCCTGCTGAGATGCAACCGCTGGTTA 1916
Query 1322 TG-ACTTTAGA-AGGGGAAGCACTTGACGCATTCAATGAATCTTACGAGGAACTGATGGA 1379
|| || ||| | |||||||||||||| ||||||||||| |||||||| ||| ||||| |
Sbjct 1917 TGAAC-TTA-ACTGGGGAAGCACTTGATGCATTCAATGAGTCTTACGACGAATTGATGAA 1974
Query 1380 TATTAACGACT-ATTCAGAAGA--A-GACGAT--T--TACAATG-T-GTGATGC-AG-GA 1427
|| ||||| | | || ||||| | || ||| | | || | | | ||||| || ||
Sbjct 1975 AATAAACGA-TGACTCGGAAGATGATGATGATGGTGATTCACCGTTAGAGATGCAAGAGA 2033
Query 1428 GAATGA-GCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTTGGAGCCATAAAG 1486
| | || | |||||||| || |||| || | |||||||||||||||||||||| ||
Sbjct 2034 GCAGGATTCACCAAGAAGATTTCTCTTCAACAAACAAAAGCTCACCTTGGAGCCAT-CAG 2092
Query 1487 ATTACATAAAGGATTCTTCAAGAACTTC-AGAGGATGTGAATTTGTCCATGCTGCAAGAT 1545
| | | || | |||||| | | |||| | | ||| | |||| |||
Sbjct 2093 ---A-A-GGACGA-T-TTCAAG--GTGCAAGAGCA-G-GAA------C-TGCT---AGAC 2131
Query 1546 C-TACTTGGT-CTGAGCGACgaagaagaag-aag-aa-ga-----aga-TGAGATGGAGA 1594
| || ||||| ||| ||||||||||||| ||| || || ||| ||| ||| |||
Sbjct 2132 CTTA-TTGGTATTGA-AGACGAAGAAGAAGAAAGCAATGACTTTGAGAGTGAAATGCAGA 2189
Query 1595 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGGTCTTCTGCTGTGTTAAATG 1654
|||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||
Sbjct 2190 AGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTCTCCTGTTGTGTTGAATG 2249
Query 1655 CCCAGAAAATGCTATTCCTCATGGAAGAAA 1684
| ||||| |||||||| |||||||||||||
Sbjct 2250 CTCAGAAGATGCTATTTCTCATGGAAGAAA 2279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5