BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08020.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325405 jgi|Araly1|325405|fgenesh1_pm.C_scaffold_6000625 2942 0.0
Ahg940266 jgi|Araly1|940266|scaffold_600810.1 859 0.0
Ahg892827 jgi|Araly1|892827|Al_scaffold_0006_823 326 5e-88
> Ahg325405 jgi|Araly1|325405|fgenesh1_pm.C_scaffold_6000625
Length=1815
Score = 2942 bits (1593), Expect = 0.0
Identities = 1743/1817 (96%), Gaps = 4/1817 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAACTCAGTGACCCAAGATGGTATCGCGACAGTATTAGCCAATCAATCCCTTGAT 60
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 1 ATGGAGAACTCAGTGACCCAAGATGGTATCGCGACAGTTTTATCGAATCAATCCCTTGAT 60
Query 61 TCCTCCTCTGTTAGACCCGAAATTGTTGTTCAAGTCGTGGATCTTAAGCCTGCT-GGAAA 119
|| ||||||||| ||||||| || |||||||||||||||||||||||||||| | |||||
Sbjct 61 TCTTCCTCTGTTCGACCCGATATCGTTGTTCAAGTCGTGGATCTTAAGCCTG-TCGGAAA 119
Query 120 TCGATATACGTTTAGTGCCAATGATGGAAAGATGAAGATTAAAGCAATGTTACCAGCGAC 179
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 120 TCGATATACGTTTAGTGCCAATGATGGAAAGATGAAGATGAAAGCAATGCTACCAGCGAC 179
Query 180 TTTGACTTCTGATATCATCTCTGGAAAGATTCAGAATCTGGGTCTTATTCGTCTCCTTGA 239
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TTTGACATCTGATATCATCTCTGGAAAGATTCAGAATCTGGGTCTGATTCGTCTCCTTGA 239
Query 240 GTATACCGTCAATGATATTCCAGGCAAATCAGAAGAAAAATATATGCTTATAACAAAATG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTATACCGTCAATGATATTCCAGGCAAATCAGAAGAAAAATATATGCTTATAACAAAATG 299
Query 300 TGAGGCTGTTGCTTCTGCACTTGACTCAGAGATTAAGGCGGAGATTAAAGCTTCCACAGG 359
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAGGCCGTTGCCTCTGCACTTGACTCAGAGATTAAGGCGGAGATTAAAGCTTCCACAGG 359
Query 360 CATAATGTTGAAACCCAAGCATGAGTTTGTTGCCAAATCAGCTTCACAGATTATCAATGA 419
||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CATAACGTTGAAACCAAAGCAAGAGTTTGTTGCCAAATCAGCTTCACAGATAATCAATGA 419
Query 420 GCAAAGGGGAAATGCTGCACCTGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCT 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCAAAGGGGAAATGCTGCACCAGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCT 479
Query 480 TGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACTAACAAAGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACAAACAAAGG 539
Query 540 AGTCATGAGAACTTACAAAAATGCCAGAGGAGAAGGATGTGTGTTTAATGTGGAACTAAC 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGTCATGAGAACTTACAAAAACGCCAGAGGAGAAGGATGTGTGTTTAATGTGGAACTAAC 599
Query 600 TGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCAGCTGCAAGGAAGTTTTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCAGCTGCAAGGAAGTTTTA 659
Query 660 TGACAGATTCGAGATGGGAAAGGTGTACTATATATCCAGGGGATCACTTAAGCTTGCTAA 719
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 660 TGACAGATTCGAGATGGGAAAGGTTTACTATATATCCAGGGGATCGCTTAAGCTTGCTAA 719
Query 720 TAAGCAGTTCAAGACGGTTCAGAACGATTATGAGATGACCCTAAATGAGAATTCTGAGGT 779
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 720 TAAGCAGTTCAAGACAGTTCAGAACGATTATGAGATGACTCTAAACGAGAATTCTGAGGT 779
Query 780 TGAAGAAGCTAGTAATGAAGAAATGTTTACCCCTGAAACTAAATTCAACTTTGTACCCAT 839
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 780 TGAAGAAGCTAGTAATGAAGAAATGTTTACTCCTGAAATTAAATTCAACTTTGTACCCAT 839
Query 840 TGATGAGTTGGGTACATACGTGAATCAGAAAGACCTTATTGATGTTATCGGTGTTGTTCA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGATGAGTTGGGTACATACGTGAATCAGAAAGACCTTATTGATGTTATCGGTGTTGTTCA 899
Query 900 AAGTGTTTCTCCTACCATGAGCATTAGAAGGAAGAACGACAATGAGATGATCCCAAAGAG 959
|||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 900 AAGTGTTTCTCCTACCATGAGCATTAGAAGGAGGAATGACAATGAAATGATCCCAAAGAG 959
Query 960 AGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTCCCTTTGGAATGATCT 1019
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 960 GGATATAACTTTGGCTGATGAGTCAAAGAATACTGTTGTGGTGTCCCTTTGGAATGATTT 1019
Query 1020 AGCAACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAATCACCCTGTTATCGCGAT 1079
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 GGCAACTGGCATAGGCCAAGAACTGCTAGACATGGCTGATAATCACCCTGTTATCGCGAT 1079
Query 1080 TAAATCTCTTAAAGTTGGAGCTTTTCAAGGTGTTTCATTGTCTACTATCAGCAGAAGCAA 1139
||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 TAAGTCTCTCAAAGTTGGAGATTTTCAAGGTGTTTCATTGTCAACTATCAGCAGAAGCAA 1139
Query 1140 TGTGGTGATAAACCCTAATTCTCCAGAAGCTACA-AAGTTGAAATCTTGGTATGATGCTG 1198
|||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1140 TGTGGTGATAAATCCTGATTCTCCAGAAGCTA-AGAAGTTGAAATCTTGGTATGATGCTG 1198
Query 1199 AAGGGAAAGAGACATCTATGTCTGCTATTGGTTCTGGGATGAGTTCTTCTGCCAACAACG 1258
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1199 AAGGGAAAGAGACATCTATGTCTGCTATTGGCTCTGGAATGAGTTCTTCTGCCAACAATG 1258
Query 1259 GATCAAGATCCATGTATTCTGACAGAGTTTTTCTTTCTCACATCACAAGCAATCCCTCTT 1318
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1259 GATCAAGATCCATGTATTCTGATAGAGTTTTTCTCTCTCACATCACAAGCAACCCCTCTT 1318
Query 1319 TAGGCGAGGAGAAGCCTGTATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAG 1378
|||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 1319 TAGGCGAGGAAAAGCCTGTATTCTTTAGTATTAGAGCTTACATAAGCTTCATCAAGCCAG 1378
Query 1379 ACCAAACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGG 1438
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1379 ACCAGACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTGACTGAGGCAATGG 1438
Query 1439 ACTCTGGTTATTGGTGTGAAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGGTATA 1498
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1439 ACTCTGGTTATTGGTGTGAAGGTTGTCAGAAAAAGGATCAAGAATGCAGTTTAAGGTATA 1498
Query 1499 TAATGGCGGTGAAAGTCTCCGACTCAACTGGTGAAACTTGGTTATCTGCATTCAATGATG 1558
||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 1499 TAATGGCGGTGAAAGTCTCTGATTCAACAGGTGAAACTTGGTTTTCTGCATTCAATGATG 1558
Query 1559 AAGCAGAGAAGATTATCGGCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAG 1618
|||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1559 AAGCAGAGAAGATTATTGGCTGCACAGCTGATGAACTCAATAATCTAAAATCAGAGGAAG 1618
Query 1619 GTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCC 1678
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1619 GTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAACTACTTGGTCATCTCATCTCTTCA 1678
Query 1679 GGATTAGTGTTTCTCAGCAAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GGATTAGTGTTTCTCAGCAAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAG 1738
Query 1739 GTGTTTCTCCAATTGACTTTGCTGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGA 1798
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1739 GTGTTTCTCCAATTGACTTTGCAGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGA 1798
Query 1799 ACAAGACATCTCAGTAA 1815
| |||||||||||||||
Sbjct 1799 AAAAGACATCTCAGTAA 1815
> Ahg940266 jgi|Araly1|940266|scaffold_600810.1
Length=1082
Score = 859 bits (465), Expect = 0.0
Identities = 555/596 (93%), Gaps = 16/596 (3%)
Strand=Plus/Plus
Query 1157 ATTCTCCAGAAGCTACAAAGTTGAAATCTTGGTATGATGCTGAAGGGAAAGAGACATCTA 1216
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 ATTTTCAAGAAGCTACAAAGTTGAAATCTTGGTATGATGCTGAAGGGAAAGAGACATCTA 562
Query 1217 TGTCTGCTATTGGTTCTGGGATGAGTTCTTCTGCCAACAACGGATCAAGATCCATGTATT 1276
||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||
Sbjct 563 TGTCTGCTATTGGCTCTGGAATGGGTTCTTCTGCCAACAATGGATCAAGATCCATGTATT 622
Query 1277 CTGACAGAGTTTTTCTTTCTCACATCACAAGCAATCCCTCTTTAGGCGAGGAGAAGCCTG 1336
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 623 CTGACAGAGTTTTTCTCTCTCACATCACAAGCAACCCCTCTTTAGGTGAGGAGAAGCCTG 682
Query 1337 TATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAAACAATGTGGTACC 1396
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 683 TATTCTTTAGTACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAGACAATGTGGTACC 742
Query 1397 GTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGGACTCTGGTTATTGGTGTG 1456
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 743 GTGCTTGCAAGACCTGTAACAAGAAAGTGACTGAAGCAATGGACTCTGGTTATTGGTGTG 802
Query 1457 AAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGGTATATAATGGCGGTGAAAGTCT 1516
|| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 803 AAGGTTGTCTGAAAAAGGATCAAGAATGCAGCTTAAGGTATATAATGGCGGTGAAAGTCT 862
Query 1517 CCGACTCAACTGGTGAAACTTGGTTATCTGCATTCAATGATGAAGCAGAGAAGATTATCG 1576
| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 863 CTGATTCAACAGGTGAAACTTGGTTTTCTGCATTCAATGATGAAGCAGAGAAGATTATTG 922
Query 1577 GCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 1636
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 923 GCTGCACAGCTGATGAACTCAATAATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 982
Query 1637 AGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGTGTTTCTCAGC 1696
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 983 AGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGT-------A-- 1033
Query 1697 AAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAGGTGTTTCTCCAATT 1752
|| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 -----TA-A-CAGTAAGAAGAGACAGAGGATAACTGTAAGAGGTGTTTCTCCAATT 1082
Score = 252 bits (136), Expect = 8e-66
Identities = 155/164 (95%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 945 GATGATCCCAAAGAGAGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTC 1004
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GATGATCAC-AAGAGGGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTC 407
Query 1005 CCTTTGGAATGATCTAGCAACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAATCA 1064
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 408 CCTTTGGAATGATCTAGCAACTGGCATAGGCCATGAACTGCTAGACATGGCTGATAATCA 467
Query 1065 CCCTGTTATCGCGATTAAATCTCTTAAAGTTGGAGCTTTTCAAG 1108
|||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 468 CCCTGTTATCGCGATTAAGTCTCTCAAAGTTGGAGATTTTCAAG 511
> Ahg892827 jgi|Araly1|892827|Al_scaffold_0006_823
Length=588
Score = 326 bits (176), Expect = 5e-88
Identities = 216/235 (92%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 1577 GCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 1636
|||||| || |||||| | |||| | ||||||||||||||||||| ||||||||||||||
Sbjct 350 GCTGCATAGTTGATGAACCCAATAAACTAAAATCAGAGGAAGGTGGAGTGAATGAGTTTC 409
Query 1637 AGACAAA-ACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGTGTTTCTCAG 1695
||||||| | ||||||||| || ||||||| |||||||||||||||| ||||||||||||
Sbjct 410 AGACAAAGA-TGAAAGAAGTTATTTGGTCACCTCATCTCTTCCGGATCAGTGTTTCTCAG 468
Query 1696 CAAGAGTATAACAGTGAGAAGAGACAGAGGA-TAACTGTAAGAGGTGTTTCTCCAATTGA 1754
|||||||||||||| ||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 469 CAAGAGTATAACAGGGAGAAGAGACAGACGACT-ACTGTAAGAGGTGTTTCTCCAATTGA 527
Query 1755 CTTTGCTGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGAACAAGACATCT 1809
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 528 CTTTACTGCTGAAACAAGATTATTGCTCCAAGACATCTCCAAGAACAAGACATCT 582
Score = 272 bits (147), Expect = 6e-72
Identities = 238/278 (86%), Gaps = 22/278 (8%)
Strand=Plus/Plus
Query 804 GTTTACCCCTGAAACT-AAATTCAACTTTGTACCCATTGATGAG-TTGGGTACATACGTG 861
||||| |||||||| | ||||||||||||||||||| |||| || |||| |||||||||
Sbjct 18 GTTTATCCCTGAAA-TAAAATTCAACTTTGTACCCACTGATAAGTTTGGATACATACGTA 76
Query 862 AATCAGAAAGACC-------------TT-ATT---GATGTTATCGGTGTTGTTCAAAGTG 904
||||||||||||| || ||| |||||||||||||||||||||| ||
Sbjct 77 AATCAGAAAGACCTTTATTGTGTTATTTCATTCCAGATGTTATCGGTGTTGTTCAAATTG 136
Query 905 TTTCTCCT-ACCATGAGCATTAGAAGGAAGAACGACAATGAGATGATCCCAAAGAGAGAT 963
|||||||| || || ||||||||| ||| ||| ||||||||| ||||||||||||| |||
Sbjct 137 TTTCTCCTAACAAT-AGCATTAGACGGAGGAATGACAATGAGTTGATCCCAAAGAGGGAT 195
Query 964 ATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTCCCTTTGGAATGATCTAGCA 1023
|||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 196 ATAACTGTAGCCGATGAGACAAAGAAAACTGTTGTGGTGTCCCTTTGGAATGATCTACCA 255
Query 1024 ACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAA 1061
|||||||| |||||||||||||| ||||||||||||||
Sbjct 256 ACTGGCATAGGCCAAGAACTGCTAGACATGGCTGATAA 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5