BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08030.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892731 jgi|Araly1|892731|Al_scaffold_0006_727 1895 0.0
Ahg940375 jgi|Araly1|940375|scaffold_600919.1 220 2e-56
> Ahg892731 jgi|Araly1|892731|Al_scaffold_0006_727
Length=1119
Score = 1895 bits (1026), Expect = 0.0
Identities = 1088/1119 (97%), Gaps = 0/1119 (0%)
Strand=Plus/Plus
Query 14 ATGGCCTTCAAGTATCTTCTACCATTGCTTTTACTGTCATTGTTGGTTGCTAATTGTGCC 73
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTCTTCAAGTATTTTCTACCATTGCTTTTACTGTCATTGTTGGTTGCTAATTGTGCC 60
Query 74 TCAAGGCCTTTGTATCGTCTCCCAAGCGAAGCAAAACATGCAACCAAGAAACCACTTCAG 133
|||||||| ||||||||||||||||| |||| ||||||||| ||||||||||| ||||||
Sbjct 61 TCAAGGCCATTGTATCGTCTCCCAAGTGAAGAAAAACATGCTACCAAGAAACCGCTTCAG 120
Query 134 ACTTCCCGTCCTTACAACCTTGCACACAGAGGATCAAACGGAGAGCTCCCTGAAGAAACT 193
||||| ||||| || |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 121 ACTTCTCGTCCATATAACCTTGCACACAGAGGATCAAACGGAGAGTTGCCTGAAGAAACT 180
Query 194 GCTCCTGCATATATGAGGGCCATAGAGGAGGGTGCAGATTTTATAGAAACCGATATTTTG 253
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 181 GCTCCTGCATATATGAGGGCCATTGAGGAGGGTGCAGATTTCATAGAAACAGATATTTTA 240
Query 254 TCTTCCAAAGACGGTGTTCTTATATGTCACCACGATGTTAATCTCGATGATACAACCGAT 313
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TCTTCCAAAGACGGTGTACTTATATGTCACCACGATGTTAATCTGGATGATACAACCGAT 300
Query 314 GTTGCAGACCATAAGGAGTTTGCAGACCGTAAGAGGACTTATGAAGTCCAAGGAATGAAC 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGCAGACCATAAGGAGTTTGCAGACCGTAAGAGGACTTATGAAGTCCAAGGAATGAAC 360
Query 374 ATGACCGGCTTCTTCACTGTTGATTTTACTCTCAAAGAGCTGAAAACACTTGGTGCAAAG 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGACCGGCTTCTTCACTGTTGATTTTACTCTCAAAGAGCTGAAAACACTTGGTGCAAAG 420
Query 434 CAGAGGTATCCTTTCAGGGATCAACAATACAATGGTAAATTCCCGATTATTACCTTCGAC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGAGGTATCCTTTCAGGGATCAACAATACAATGGTAAATTCCCGATTATTACCTTCGAC 480
Query 494 GAGTATATTTCGATAGCACTGGATGCACCTAGAGTGGTTGGGATATATCCAGAGATCAAG 553
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GAGTATATTTCGATAGCATTGGATGCACCTAGAGTAGTTGGGATATATCCAGAGATCAAG 540
Query 554 AATCCGGTTTTCATGAATCAGCAAGTGAAGTGGGCGGATGGTAAAAAATTTGAAGATAAA 613
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 AATCCGGTTTTTATAAATCAGCAAGTGAAATGGGCGGATGGTAAAAAATTTGAAGATAAA 600
Query 614 TTTGTGGAAACTTTGAAGAAATATGGATACAAAGGCTCATATCTGTCTGAAGATTGGTTA 673
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 TTTGTGGAAACTTTGGAGAAATATGGATACAAAGGCTCATATATGTCTGAAGATTGGTTA 660
Query 674 AAACAGCCAATATTTATTCAGTCTTTTGCAGCAACTTCGCTAGTTTACATTTCAAACATG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 AAACAGCCAATATTTATTCAGTCTTTTGCAGCAACTTCGCTAGTTTACATTTCAAGCATG 720
Query 734 ACAGACTCACCAAAATTGTTTTTGATCGACGATGTCACTATTCTTACCGAAGACACTAAT 793
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACAGACTCACCAAAATTGTTCTTGATCGACGATGTCACTATTCTTACCGAAGACACTAAT 780
Query 794 AAGACTTACGCAGAGATCACATCAGACGCATATTTGGATTACATTAAACCATATGTAATT 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGACTTACGCAGAGATCACATCAGACGCATATTTGGATTACATTAAACCATATGTAATT 840
Query 854 GGGATTGGTCCATGGAAAGACACAATTGTTCCTGTGAACAATAACCGTCTCATGACACCA 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGGATTGGTCCATGGAAAGACACAATTGTTCCTGTGAACAATAACCGTCTCATGACACCA 900
Query 914 ACAGATTTAGTTGCGAGAGCACATTCGCGTAATCTTCAGGTCCATCCATACACATACCGT 973
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 ACAGATTTAGTTGCGAGAGCACATTCACGTAATCTTCAGGTCCATCCATACACATACCGT 960
Query 974 AATGAGAACCAGTTTCTGCATTTAGAGTTTAATCAGGACCCTTACCTAGAGTATGATTAT 1033
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 961 AATGAGAACCAGTTTCTGCATTTAGAGTTTAATCAAGACCCTTATCTAGAGTATGATTAT 1020
Query 1034 TGGCTCAATAAGATCGGTGTTGATGGTTTGTTCACTGATTTCACTGGAAGTCTACACAAT 1093
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGCTCAATAAGATTGGTGTTGATGGTTTGTTCACTGATTTCACTGGAAGTCTACACAAT 1080
Query 1094 TACCAGGAATTGAAGTCTCCTTTGCCTCAGCAACAGTGA 1132
|||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TACCAGGAATTGAAGTCTCCTTTGCCTCAGCAACAGTGA 1119
> Ahg940375 jgi|Araly1|940375|scaffold_600919.1
Length=342
Score = 220 bits (119), Expect = 2e-56
Identities = 145/158 (92%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 795 AGACTTACGCAGAGATCACATCAGACGCATATTTGGATTACATTAAACCATATGTAATTG 854
|||| ||||| ||||| ||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 29 AGACATACGCGGAGATTACATCAGACGCATATTTAGATTACATTAAACTATATGTACCTG 88
Query 855 GGATTGGTCCATGGAAAGACACAATTGTTCCTGTGAACAATAACCGTCTCATGACACCAA 914
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 89 AGATTGGTCAATGGAAAGACACAATTGTTCCTGTGAACAATAACTGTCTCATGACACCAA 148
Query 915 CAGATTTAGTTGCGAGAGCACATTCGCGTAATCTTCAG 952
||| ||| ||||| ||||||||||||||||||||||||
Sbjct 149 CAGTTTTTGTTGCAAGAGCACATTCGCGTAATCTTCAG 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5