BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08060.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487638 jgi|Araly1|487638|fgenesh2_kg.6__772__AT5G08060.1 1212 0.0
> Ahg487638 jgi|Araly1|487638|fgenesh2_kg.6__772__AT5G08060.1
Length=878
Score = 1212 bits (656), Expect = 0.0
Identities = 781/839 (93%), Gaps = 18/839 (2%)
Strand=Plus/Plus
Query 37 AAGTATTGAACCAATCCAATATATGAGACCGGTTTAATAATCCTT-CGATTTCGATTCGA 95
|||| || |||||||||||||| |||||||||||||||| ||||| | |||||||||||
Sbjct 1 AAGTGTTTAACCAATCCAATATCTGAGACCGGTTTAATAGTCCTTCCCCTTTCGATTCGA 60
Query 96 A-CTTTGGTTTCATCT-C----CCCAAATCGAAGCGAAGGTCTCTCAACAATGGCGAAAT 149
| ||||||||||||| | |||||||||||||||| |||||||| ||||||||||||
Sbjct 61 AGTTTTGGTTTCATCTCCTTTGCCCAAATCGAAGCGAAAGTCTCTCATCAATGGCGAAAT 120
Query 150 CAGTGTCGACGGCGGCTTCCTCGCTTGTGCAAAACCTTAGGCGGTACATCAAGAAGCCAT 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGTGTCGACGGCGGCTTCCTCGCTTGTGCAAAACCTTAGGCGGTACATCAAGAAGCCAT 180
Query 210 GGCAGATCACCGGACCTTGCGCTCACCCAGAATACCTCGAAGCTGTTCCAAAGGCGACGG 269
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 181 GGCAGATCACCGGACCTTGCGCTCACCCGGAATACCTCGAAGCTGTTCCCAAGGCGACGG 240
Query 270 AGTATCGTCTCCGATGCCCCGCTACGATTGATGAAGAAGCAATCGTGCCTTCCTCGGATC 329
||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||
Sbjct 241 AGTATCGTCTCCGATGCCCCGCTACGATTGATGAAGAGGCGATCGTGCCCTGCTCGGATC 300
Query 330 CAGAGACCGTATACAACATCGTATACCACGGCAGAGATCAGCGCAGAAACCGCCCACCGA 389
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGATACCGTATACAACATCGTATACCACGGCAGAGATCAGCGCAGAAACCGCCCACCGA 360
Query 390 TCCGGCGATACGTATTGACGAAGGACAACGTGGTTCAGATGATGAACGAGAAGAAGAGTT 449
||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 361 TCCGGCGATACATATTGAAGAAGGACAACGTGGTTCAGATGATGAATGAGAAGAAGACTT 420
Query 450 TTGACGTCTCGGACTTCCCTAAGGTTTACTTGACCACCACAGTCGAGGAGGATTTGGATA 509
| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 421 TCGATGTCTCGGACTTCCCTAAGGTTTACTTGACTACCACAGTCGAGGAGGATTTGGACA 480
Query 510 CGCGTGGTGGAGGCTACGAGAAATAATCAGGTTTTTTGCTCATCTCGTCTTTCTCTTGTA 569
||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||
Sbjct 481 CGCGTGGTGGAGGCTACCAGAAATAAACAGGGTTTTTGCTCATCTCGTCTTTCTCCTGTA 540
Query 570 ACGTACTGATGGGGGAAAGACTGCGCGTGACACATCTCTACCGACAAAAAA-TATCTCCC 628
|| ||| |||||| |||||||||||||||||| ||||||| |||||||||| | ||||||
Sbjct 541 ACCTACCGATGGGCGAAAGACTGCGCGTGACATATCTCTAGCGACAAAAAAATCTCTCCC 600
Query 629 TTGTTTGATT-ATTCAATAAGATATCTAGTAGCTTTATGAACTACAAAACACTTCATTTT 687
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGTTTGATTTATTCAATAAGATATCTAGTAGCTTTATGAACTACAAAACACTTCATTTT 660
Query 688 CCTTCACAAGAAACAGATTGTTGTTCAGTTGTATTCCCTATCTTTATGATGAACCCGTGA 747
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 CCTTCACAAGAACCAGATTGTTGTTCAGTTGTATTCCCTATGTTTATGATGAACCCGTGA 720
Query 748 TCGTGATTGTTTCAAGTCTGAGTGATTTAGAAATGGTTAATAATGTAATACAAAGAGAGA 807
| || || | ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 721 T--TG-TT-T--CAAGTCTGACTGATTTAGAAATGGATAATAATGTAATACAAAGAGAGA 774
Query 808 ACCAGTTAGTAGTAGTCTCTGTGTTCTTGGGGACCCTTTCTTCTCTCCATCAGTGACTA 866
| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 AACAGTTAGTAGT---CTCTGTGTTCTTGGGGACCCTTTCTTCTCTGCATCAGTGACTA 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5