BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G08070.1

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487639 jgi|Araly1|487639|fgenesh2_kg.6__773__AT5G08070.1         1171    0.0  


> Ahg487639 jgi|Araly1|487639|fgenesh2_kg.6__773__AT5G08070.1
Length=726

 Score = 1171 bits (634),  Expect = 0.0
 Identities = 698/729 (96%), Gaps = 3/729 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAATaaaaaaaGAAGATCAGAAAAGTTCCTTGTCCTTGTTGACGCAACGATGGAAT  60
            |||||||||||| ||||||||||||| ||||| ||||| ||||||| |||||||||||||
Sbjct  1    ATGGGAATAAAACAAGAAGATCAGAAGAGTTCTTTGTCATTGTTGAAGCAACGATGGAAT  60

Query  61   AATCCGAGGATCGTGCGAGTCTCCCGAGCATTTGGAGGCAAAGATAGACACAGCAAAGTG  120
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  61   AATCCGAGGATCGTGCGAGTCTCCCGAGCATTCGGAGGCAAAGACAGACACAGCAAAGTG  120

Query  121  TGCACAGTTCGTGGTCTCCGAGACAGGAGGATAAGGTTGTCGGTGATGACAGCGATCCAA  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  TGCACAGTTCGTGGTCTCCGAGACAGGAGGATAAGGTTGTCGGTGATGACAGCGATTCAA  180

Query  181  GTCTACGACCTTCAAGAACGATTAGGGCTGAGTCAGCCTAGCAAAGTCATTGATTGGCTC  240
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTCTACGACCTTCAAGAACGTTTAGGGCTGAGTCAGCCTAGCAAAGTCATTGATTGGCTC  240

Query  241  TTAGAAGTTGCCAAAAACGACGTCGATTTGCTTCCTCCTTTGCAATTCCCACCTGGTTTT  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  TTAGAAGTTGCCAAAAACGACGTCGATTTGCTTCCTCCTTTGCAATTCCCACCTGGGTTT  300

Query  301  CACCAACTTAACCCTAATCTCACCGGCCTTGGAGAATCTTTTCCCGGGGTCTTCGATCTT  360
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGCCAACTTAACCCTAATCTCACCGGCCTTGGAGAATCTTTTCCCGGGGTCTTCGATCTT  360

Query  361  GGAAGAACACAGAGAGAAGCTTTGGATCTTGAGAAAAGGAAATGGGTTAATCTTGATCAT  420
            |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  361  GGAAGAACCCAGAGAGAAACTTTGGATCTTGAGAAAAGTAAATGGGTTAATCTTGATCAT  420

Query  421  GTGTTTGATCACATCGATCATCACAACCATTTCTCGAATTCAATCCAGAGCAACAAGCTT  480
            | ||||||||||| |||| ||  |  ||||||||||||||||||||||||||||||||||
Sbjct  421  GGGTTTGATCACAGCGATGAT--C-TCCATTTCTCGAATTCAATCCAGAGCAACAAGCTT  477

Query  481  TATTTCCCTACAATTACTTCGTCTAGCAGCTCTTATCACTACAACCTTGGACATCTCCAA  540
            | ||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  478  TCTTTCCCTTCTACTACTTCGTCTAGTAGCTCTTATCACTACAACCTTGGACATCTCCAA  537

Query  541  CAGTCACTACTAGACCAATCTGGTAACGTCACTGTCGCATTTTCTAATAACTATAATAAT  600
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  538  CAGTCACTACTAGACCAATCTGGTAACGTCACTGTTGCATTTTCCAATAACTATAATAAT  597

Query  601  AATAATCTCAATCCTCCGGCGGCGGAAACTATGAGTTCTCTATTCCCAACAAGGTACCCT  660
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  598  AATAATCTCAATCCTCCGGAGGCGGAAACTATGAGTTCTCTATTCCCAACAAGGTACCCT  657

Query  661  TCGTTTCTCGGTGGTGGTCAACTTCAACTCTTTAGTAGCACAAGCTCACAACCAGACCAT  720
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  658  TCGTTTCTCGGTGGTGGTCAACTTCAACTCTTTAGTAGCACAAGCTCACAGCCAGACCAT  717

Query  721  ATCGAGTAG  729
            |||||||||
Sbjct  718  ATCGAGTAG  726



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26838533568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5