BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08100.1
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940271 jgi|Araly1|940271|scaffold_600815.1 1594 0.0
> Ahg940271 jgi|Araly1|940271|scaffold_600815.1
Length=993
Score = 1594 bits (863), Expect = 0.0
Identities = 946/987 (96%), Gaps = 2/987 (0%)
Strand=Plus/Plus
Query 51 GTTATACGGCGGAAGATGGTGGGGTGGGCGATTGCGCTACACGGCGGTGCCGGAGACATT 110
||||| |||||| |||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 8 GTTATCCGGCGGGCGATGGTGGGGTGGGCGATAGCGCTACACGGCGGCGCTGGAGATATT 67
Query 111 CCGATCGATCTCCCCGACGAGCGACGTATCCCTCGTGAGAGCGCCCTCCGTCACTGCCTC 170
|||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 68 CCGATCGATCTCCCTGACGAGAGACGTATCCCTCGTGAGACCGCCCTCCGACACTGCCTC 127
Query 171 GATCTTGGCATCTCCGCCCTCAAATCCGGCAAGCCTCCCTTGGACGTCGCCGAACTTGTC 230
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 128 GATCTTGGCGTCTCCGCCCTCAAATCCGGCAAGCCTCCCTTGGACGTCGCCGAACTCGTC 187
Query 231 GTTCGTGAACTTGAGAACCACCCGGACTTCAATGCGGGTAAAGGATCTGTCTTAACTGCA 290
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 188 GTTCGTGAACTTGAAAACCACCCGGACTTCAATGCGGGTAAAGGATCTGTCTTAACTACA 247
Query 291 CAAGGCACTGTTGAAATGGAAGCTTCCATTATGGACGGTAAAACCAAAAGATGTGGAGCT 350
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 248 CAAGGCACTGTTGAAATGGAAGCTTCTATTATGGACGGTAATACCAAAAGATGTGGAGCT 307
Query 351 GTCTCCGGCTTGACCACTGTTGTTAATCCCATTTCTTTAGCTCGCCTCGTCATGGAGAAA 410
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 308 GTCTCCGGCTTGACCACTGTTGTTAATCCGGTATCTTTAGCTCGCCTCGTCATGGAGAAA 367
Query 411 ACTCCTCATATATATCTTGCATTCGATGCTGCTGAAGCTTTTGCAAGAGCACATGGTGTT 470
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 368 ACGCCTCATATATATCTTGCATTCGATGCTGCTGAAGCTTTTGCAAGAGCACATGGCGTT 427
Query 471 GAGACGGTAGATTCTAGCCATTTCATAACTCCTGAAAACATTGCAAGGCTAAAGCAGGCC 530
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 428 GAGACGGTCGATTCTAGCCATTTCATTACTCCTGAAAACATTGCTAGGCTAAAGCAGGCC 487
Query 531 AAAGAATTCAATCGAGTCCAGTTGGATTACACAGTCCCTAGTCCGAAAGTACCGGACAAT 590
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 488 AAAGAATTCAATCGAGTCCAGTTGGATTACACAGTCCCTACTCCGAAAGTACCGGACAAT 547
Query 591 TGCGGTGACAGCCAAATAGGAACGGTCGGATGTGTAGCTGTGGACAGTGCTGGAAATCTA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TGCGGTGACAGCCAAATAGGAACGGTCGGATGTGTAGCTGTGGACAGTGCTGGAAATCTA 607
Query 651 GCTTCGGCTACATCAACGGGCGGTTATGTCAACAAAATGGTTGGCAGAATTGGGGATACG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCTTCGGCTACATCAACGGGCGGTTATGTCAACAAAATGGTTGGCAGAATTGGGGATACG 667
Query 711 CCAGTCATTGGCGCAGGAACTTACGCTAACCACCTTTGTGCCATCTCAGCCACAGGTAAA 770
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 668 CCTGTCATTGGCGCAGGAACATACGCTAACCACCTTTGTGCCATCTCAGCCACAGGTAAA 727
Query 771 GGAGAGGATATCATCCGTGGAACCGTGGCTAGAGACGTGGCTGCACTCATGGAATATAAA 830
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 728 GGAGAAGAGATCATCCGTGGAACCGTGGCTAGAGACGTGGCTGCACTCATGGAGTATAAA 787
Query 831 GGCTTGTCTTTGACTGAGGCAGCGGCTTATGTTGTTGACCAATCTGTTCCCAGAGGAAGC 890
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 788 GGCTTGTCTTTGACCAAGGCAGCGGCTTATGTTGTTAACCAATCTGTTCCCAGAGGAAGC 847
Query 891 TGTGGACTCGTTGCTGTCTCTGCCAATGGTGAAGTCACAATGCCGTTTAACACTACCGGA 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 848 TGTGGACTCGTTGCTGTCTCTGCCAATGGTGAAGTCACAATGCCGTTTAACACTACTGGT 907
Query 951 ATGTTCAGGGCTTGTGCTAGCGAAGATGGTTACTCTGAGATCGCAATCTGGCCAAACAAT 1010
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 908 ATGTTCAGGGCTTGTGCTACCGAAGATGGTTACTCTGAGATCGCTATCTGGCCAAACAAT 967
Query 1011 TGAAATCACTAGACG-AAGGAATGGCT 1036
||||||||||||||| ||| | |||||
Sbjct 968 TGAAATCACTAGACGGAAG-AGTGGCT 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44985042060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5