BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08120.1
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487645 jgi|Araly1|487645|fgenesh2_kg.6__779__AT5G08120.1 1899 0.0
> Ahg487645 jgi|Araly1|487645|fgenesh2_kg.6__779__AT5G08120.1
Length=1300
Score = 1899 bits (1028), Expect = 0.0
Identities = 1215/1299 (94%), Gaps = 37/1299 (3%)
Strand=Plus/Plus
Query 67 TAGTTTCAGATGAACGTTGGAGATTGAGATCCAAAGCTCAGACTCGGAACGAAGAATGAA 126
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1 TAGTTTCAGATGAACGTTGGAGATTGAGATCCAAAGCTCAGACT-----CGAAGAATG-A 54
Query 127 ACGAAtttttttAAAGAAAATAAAAATCAAGtctttctcttcgtctatctctctctctgc 186
||||||||||| ||||||||| || || || | | ||||||| |
Sbjct 55 ACGAATTTTTTAAAAGAAAAT---AA--AA----------TC--C-AAAGCTCTCTC--C 94
Query 187 tcagactctctGGTGTTGAAGACTAATCACTGAAGCAGATCTATTATACGGAGG-ACGAA 245
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 95 TCAGACTCTCTGGTGTTGAAGACCAATCACTGAAGCAGATCTATTATACGGAGGAAAGGT 154
Query 246 GAAGATGTATGAGCAGCAGCAACATTTCATGGATTTGCAAAGCGATTCTGGGTTTGGGGA 305
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GAAGATGTATGAGCAACAGCAACATTTCATGGATTTGCAAAGCGATTCTGGGTTTGGGGA 214
Query 306 CGATAGCTCCTGGCTCGCCGGCGATGACGATCTTCGTCTCTCTCCTCACCAATCTGCCGC 365
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 215 TGATAGCTCCTGGCTCGCCGGCGATGACGATCTTCGACTCTCTCCTCACCAATCCGCCGC 274
Query 366 CGGTACGAACTCCGGCAATGAGAATCTAGATCGTCGTCTCTTAAAAGATCTCGTCGAGAT 425
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 275 CGGTACGAACTCCGGCAATGAGAATCTAGATCGTCGTCTTTTAAAAGATCTCGTTGAGAT 334
Query 426 GGTTCCCCTTATCGAGCATTACATGGAACATAAAGAAAGGAGTTCGTTTAAGCGGCGTGG 485
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 335 GGTTCCCCTTATCGAGCATTACATGGAACACAAAGAAAGGAGTTCGTTTAAGCGGCGTGG 394
Query 486 TTCCATGATCTACACTAAGATGCCTTCAAAAGAATCCTTGTCCCGAAGGGGAAGAAATGC 545
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 395 TTCCATGATCTACACTAAGATGCCTTCTAAAGAATCCTTGTCCAGAAGGGGAAGAAATGC 454
Query 546 TTCTCAAACAGTCCCAGGAAGAAAGAAGAGAGACCAAGAGGGAAATGACGATGTTATGAA 605
||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 455 TTCTCAAACAGCCCCAGGAAGAAAAAAGAGAGACCAAGAGGGCAATGATGATGTTATGAA 514
Query 606 CAATTCTAGGGAAGATGATGAAAACGCAAAGGCTTTGGCTGGTGCAGAAAAGGAAGAAAT 665
||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||| |
Sbjct 515 CAATTCTAGGGAAGATGGTGAAAACGCAACGGCTTTGTCTGGTGCTGAAAAGGAAGAACT 574
Query 666 GAGTAGACTAAGAGAGCAAGTGAATGACTTGCAGACAAAATTA-TCGGAGAAAGAAGAGG 724
||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 575 GAGTAGACTAAGAGAACAAGTGAATGACTTGCAGACAAAATTATTC-GAGAAAGAAGAGG 633
Query 725 TTTTAAAGTCAATGGAGATGTCAAAGAATCAGGTAAACGAGATACAAGAAAAGCTTGAAG 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTTTAAAGTCAATGGAGATGTCAAAGAATCAGGTAAACGAGATACAAGAAAAGCTTGAAG 693
Query 785 CAACAAATCGATTGGTTGCTGAGAAGGATATGTTGATCAAGTCTATGCAGTTACAATTAT 844
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 694 CAACAAATCGATTGGTTGCTGAGAAGGAGATGTTGATCAAGTCTATGCAGTTACAATTAT 753
Query 845 CGGACACAAAGATCAAACTTGCTGACAAGCAAGCAGCCCTTGAGAAGACTCAATGGGAAG 904
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 754 CGGACACAAAGATCAAACTTGCAGACAAGCAAGCTGCCCTTGAGAAGACTCAATGGGAAG 813
Query 905 CAAAGACAACAGGAACAAGAGCAATCAAGCTTCAAGAACAGCTAGATGCTGTTGAAGGAG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CAAAGACAACAGGAACAAGAGCAATCAAGCTTCAAGAACAGCTAGATGCTGTTGAAGGAG 873
Query 965 ACATCTCTACATTCACACGGGTGTTCGAAACTTTGGCAAAAACTGATTCCAAGAAACCCG 1024
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 874 ACATCTCTACGTTCACACGGGTGTTCGAAACTTTGGCGAAAACTGATTCCAAGAAACCCG 933
Query 1025 ATAGGGATTATGATGCAGTCCCATATGAATTTGATCATCTTCCATAT-TTAGACGATGTA 1083
||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 934 ATAGGGATTATGATGCAACCCCATATGAATTTGATCATCTTCCATATCTT-GACGATGTA 992
Query 1084 GATGAAACTGACCTGAGGAAAATGGAAGAAGCAAGATTAGCTTATGTAGCAGCAGTGAAT 1143
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 993 GATGAAACAGACCTGAGGAAAATTGAAGAAGCAAGATTAGCTTATGTTGCAGCAGTGACT 1052
Query 1144 ACCGCAAAGGAACGAGAAGATGAAGAATCTCTGGTCATGGCTGCTCAAGCTCGAGCTTAC 1203
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1053 ACCGCAAAGGAACGAGAAGATGAAGAATCTCTGGCCATGGCTGCTCAAGCTCGAGCCTAC 1112
Query 1204 CTGCAATCACTAGCCTTTACATATTAATCATCTTCAGGTACTTACTTCTTTATAGGATAT 1263
|||||||| |||||||||||||| |||||| |||||||||||| | ||| |||||||||
Sbjct 1113 CTGCAATCCCTAGCCTTTACATAATAATCACCTTCAGGTACTT--T-CTT-ATAGGATAT 1168
Query 1264 TTCTCTCCTTGGGTTGTTTTAGGAGTATGTAGATTT-GTACCATGAAGAAATTGGAGAAG 1322
|||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1169 TTCTCTCCTTGGTTTGTTTTAGGAGTATGTAGATTTCGTACCATGAAAAAATTGGAGAAG 1228
Query 1323 AAAAGCTTATGTGAGAAACATAAAGTTATGGTTTTCCCC 1361
|||||||| |||||||||||||||||| |||||| ||||
Sbjct 1229 AAAAGCTTGTGTGAGAAACATAAAGTTTTGGTTT-CCCC 1266
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1383 GAGTTTTTGTTTCTTCATTTGAGCATGTATGTAT 1416
|||||||||||||||||||||||||||||| |||
Sbjct 1267 GAGTTTTTGTTTCTTCATTTGAGCATGTATCTAT 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56106930885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5