BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08130.5
Length=2553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940275 jgi|Araly1|940275|scaffold_600819.1 2320 0.0
> Ahg940275 jgi|Araly1|940275|scaffold_600819.1
Length=1663
Score = 2320 bits (1256), Expect = 0.0
Identities = 1554/1686 (92%), Gaps = 68/1686 (4%)
Strand=Plus/Plus
Query 478 AACCGTCGAAGCTCTGTCGTTCATGGAGCTTCCTCAACCTCGTCCCTTCAAAACCCAAGA 537
||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1 AACCGTCGAAG--CTGTCGTTCATGGAGCTTCCTCAACCTCGACCCTTCAAAA--C---- 52
Query 538 ATTTCGCACAGGGAGAAAACCAACACATGATTTTTTATCGCTCTGCAGTCATTCAACCGT 597
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 ----CG-A-AGGGAGAAAACCAACACATGATTTTTTATCGCTCTGCAGTCATTCAACCGT 106
Query 598 CCACCCAGATCCAAAGCCAACACCACCACCTTCTTCTCAAGGTAGTCACTTGAAAACCCA 657
|||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||
Sbjct 107 CCACCCAGATCCAAAGCC-A-A-CACCACCTTCTTCTCAAGGTGGTCACTTGAAAACCCA 163
Query 658 TGATTTTCTTCAACCG-TTAGAATGTGTTGGTGCTAAAGAAGACGTAAGTAGGATTAACT 716
|||||||||||||||| || |||||||||| |||||||||||| |||||||||||||||
Sbjct 164 TGATTTTCTTCAACCGCTT-GAATGTGTTGCTGCTAAAGAAGAGGTAAGTAGGATTAACA 222
Query 717 CTACCACTACAGCGTCCGAGAAGCCACCGCCCCCTGCTCCACCTCCACCGTTGCAGCACG 776
||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 223 CTACCACTACAGCTTCCGAGAAGCCACCGCCCCCTGCACCTCCTCCACCGCTGCAGCACG 282
Query 777 TGCTTCCCGGTGGTATAGGGACTTATACGATTAGCCCCATTCCTTACTTCCATCATCATC 836
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 283 TGCTTCCCGGTGGTATAGGGACTTATACAATAAGCCCCATTCCTTACTTCCATCATCATC 342
Query 837 ATCAGAGAATTCCTAAGCCGGAGTTGTCACCACC-A--ATG----ATG-T--T---C-A- 881
|||||||||||||||||||||||||||||||||| | ||| ||| | | | |
Sbjct 343 ATCAGAGAATTCCTAAGCCGGAGTTGTCACCACCGATGATGTTCAATGCTGCTGCGCAAG 402
Query 882 --A-T-GC--TAATGAGAGAAACGTTTTGGATGAGAATTCTAACTCTAATTGCAGCTCGT 935
| | || |||||||||||| || | ||||||||||| ||||||||||||||||| |
Sbjct 403 CGAGTGGCGGTAATGAGAGAAATATTGTCGATGAGAATTCAAACTCTAATTGCAGCTCAT 462
Query 936 ACGCCGCTGCATCAAGCGGGTTCACTCTGTGGGATGAATCTGCTTCTGGGAAGAAGGGAC 995
||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 463 ACGCCGCTGCAGCTAGCGGGTTCACTCTGTGGGATGAATCTGCTTCAGGGAAGAAGGGAC 522
Query 996 AGACAAGGAAGGAGAATAGTGTTGGGGAGAGAGTAAACATGAGAGCTGATGTTGCAGCAA 1055
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AGACAAGGAAGGAGAATAATGTTGGGGAGAGAGTAAACATGAGAGCTGATGTTGCAGCAA 582
Query 1056 CTGTGGGACAATGGCCAGTGGCGGAGA-GACGGTCCCAGTCTTTGACAAACAACCATATG 1114
||||||||||||||||||||| ||| | ||||||| ||||| |||||||| |||||||||
Sbjct 583 CTGTGGGACAATGGCCAGTGGTGGA-ACGACGGTCTCAGTCGTTGACAAATAACCATATG 641
Query 1115 AGCGGTTTCAGTTCTCTCTCTTCCTCTCAAGGGTCTGTGCTTAAGAGCCAGAGCTTCATG 1174
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 642 AGCGGTTTCAGTTCTCGCTCTTCCTCTCAAGGATCTGGGCTTAAGAGCCAGAGCTTCATG 701
Query 1175 GACATGATAAGGTCAGCAAAAGGAAGTTCACAGGAAGATGATTTAGATGATGAAGAAGAT 1234
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 702 GACATGATAAGGTCAGCAAAAGGAAGTTCACAGGACGATGACTTAGATGATGAAGAAGAT 761
Query 1235 TTTATCATGAAGAAAGAAAGCTCCTCGACTAGCCAGAGCCATAGAGTGGATTTGAGGGTA 1294
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 762 TTTATCATGAAGAAAGAAAGCTCCTCGACTAGTCAGAGCCATAGAGTGGATTTGAGGGTT 821
Query 1295 AAAGCAGATGTGAGAGGCTCTCCTAACGATCAAAAGCTGAACACACCTAGGTCTAAACAT 1354
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 822 AAAGCAGATGTGAGAGGCTCTGCTAACGATCAAAAGCTGAACACACCTAGGTCTAAACAT 881
Query 1355 TCTGCTACAGAGCAACGGAGAAGGAGCAAGATCAATGATAGATTTCAGATGTTGAGACAA 1414
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 882 TCTGCTACAGAGCAACGGAGGAGGAGCAAGATCAATGATAGATTTCAAATGTTGAGACAA 941
Query 1415 CTAATACCTAACAGCGACCAAAAGCGGGATAAGGCCTCCTTCTTACTAGAGGTTATCGAG 1474
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 942 CTAATACCTAACAGCGACCAAAAGCGGGATAAGGCCTCTTTCTTACTAGAGGTTATCGAG 1001
Query 1475 TATATTCAATTCTTACAAGAGAAAGCAGACAAGTATGTGACCTCTTACCAAGGATGGAAT 1534
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1002 TATATTCAATTCTTACAAGAGAAAGCAGACAAGTATGAGACCTCTTACCAAGGATGGAAT 1061
Query 1535 CACGAACCTGCGAAGCTATTGAATTGG-AGTAACAACAACCAACAGCTAGTACCTGAAGG 1593
||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 1062 CACGAACCTGCGAAGCTATTGAATTGGCAG-AGTAACAACCAACAGCTAGTACCTGAAGG 1120
Query 1594 AGTTGCTTTTGCTCCAAAATTGGAAGAAGAGAAAAACAACATTCCGGTTTCGGTCCTTGC 1653
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1121 AGTTGCTTTTGCTCCAAAAATGGAAGAAGAGAAGAACAACATTCCGGTTTCGGTCCTTGC 1180
Query 1654 AACTGCACAAGGTGTTGTTATTGATCATCCAACAACCGCGACGACCTCTCCATTTCCATT 1713
||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 1181 AACAGCACAAAGTGTTGTTATCGATCATCCAACAACCGCAACGACCTCTCCATTTCCCTT 1240
Query 1714 GTCGATTCAAAGCAACAGTTTTTTCTCTCCTGTGATTGCGGGTAATCCCGTACCCCAGTT 1773
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1241 GTCGATCCAAAGCAACAGTTTTTTCTCTCCTGTGATTGCGGGTAATCCCGTACCTCAGTT 1300
Query 1774 CCACGCAAGAGTCGCATCATCAGAGGCTGTAGAGCCAAGTCCGAGTTCCCGGAGTCAAA- 1832
|||| |||||||| ||||||||||| ||||||||||||| |||||||| |||| |||||
Sbjct 1301 CCACACAAGAGTCACATCATCAGAGACTGTAGAGCCAAGCCCGAGTTCTCGGAATCAAAC 1360
Query 1833 --A---A--GAA-GAAGAAGATGA-G--GAAG-T--------TCTTGAGGGTAACATCAG 1872
| | ||| |||||||| || | |||| | ||||||||||||||| ||
Sbjct 1361 TCAGCCATTGAAAGAAGAAGAAGAAGTAGAAGATGAGGAAGATCTTGAGGGTAACATTAG 1420
Query 1873 AATTTCAAGTGTTTACTCACAAGGATTAGTGAAAACACTGAGAGAAGCATTGGAGAATTC 1932
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 AATTTCAAGTGTTTACTCGCAAGGATTAGTGAAAACACTGAGAGAAGCATTGGAGAATTC 1480
Query 1933 AGGAGTGGACTTAACGAAAGCAAGCATCTCCGTTGAAATCGAGCTCGCTAAACAATCCTC 1992
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1481 AGGAGTGGACTTAACGAAAGCAAGCATCTCCGTTGAAATTGAGCTCGCTAAACAATCCTC 1540
Query 1993 GTCTTCTTCCTTCAAGGATCATGAAGTTCGTGAACCGGTTTCTCGAACCAGAAACGACAA 2052
|||||| | ||||||| || |||||||||||||||||| |||||||||||||||||| |
Sbjct 1541 GTCTTC--C-TTCAAGGGTCGTGAAGTTCGTGAACCGGTCTCTCGAACCAGAAACGACGA 1597
Query 2053 TGTCAAGCAAACTCGGAAACCAAAACGGCTCAAGACGGGACAGTAGAAGTTATAAAAACA 2112
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1598 TGTTAAGCAAACTCGGAAACCAAAACGGCTCAAGACGGGACAATAGAAGTTATAAAAACA 1657
Query 2113 AAACCC 2118
||||||
Sbjct 1658 AAACCC 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96254049115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5