BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08139.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940276 jgi|Araly1|940276|scaffold_600820.1 1533 0.0
> Ahg940276 jgi|Araly1|940276|scaffold_600820.1
Length=1204
Score = 1533 bits (830), Expect = 0.0
Identities = 1097/1217 (90%), Gaps = 54/1217 (4%)
Strand=Plus/Plus
Query 118 TCTCTCGATCTTCTCTATCTTTGTCATGGATGATCTGTTACACCAGCGA-GTCGAGCAGT 176
||||||||||||||||| || |||||| | |||||||||||||||||| || ||||||
Sbjct 1 TCTCTCGATCTTCTCTAGCTCTGTCAT-G--GATCTGTTACACCAGCGAGGT-GAGCAGA 56
Query 177 CTCAGGTAACTCCTCCTCATGACG--ATT-CTAATATCCATGGTGATTTTGATAACGAGG 233
|| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 57 CTGAGGTAACTTCTCCTCATGACGATATTAATAATATCCATGGTGATTTTGATAACGAGG 116
Query 234 CTACGGATGAATCGCGATCCGAAACTTGTTCTGTTGTGATAGAGGGAAACTGCGACATGG 293
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 117 CTACGGATGAATCGCGATCAGAATCTTGTTCTGTTGTGATAGAGGGAAATTGCGACATGG 176
Query 294 TGATTGAATTAGGATTGGAATCTGGAAGTGTTATCGTTGAGAATTTAGGTGATAGTGATA 353
| ||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 177 TTATTGAATTAGGGTTGGAATCTGGAAGTGTTCTTGTTGAGAATTTAGGTGATAATGATA 236
Query 354 TTGATGTTAGCAATGATTTTGATGAACCTGATGACGACGATTTCTTTGTGGGGAGGACTG 413
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 237 TTGATGTTAGTAATGATTTTGATGAACCTGATGACGACGATTTCTTTGTTGGGAGGAGTG 296
Query 414 ATTTTGGGCTCGAGTTCCGCGATATTGCATC-TTCGGGGAATGATATCAGGTTGATTACG 472
|||||||||||||||| |||||||| ||||| | ||||| ||||||| ||||||||||
Sbjct 297 ATTTTGGGCTCGAGTTTCGCGATATCGCATCGAT-GGGGACTGATATCCGGTTGATTACA 355
Query 473 GTGGAATCGGGTTC--A-GATGATGATGATGGT-GT-T-GAGAATGAGAGGGAATTATGG 526
|||| ||||||||| | ||||||||||||| | || | |||||||||||||||||||||
Sbjct 356 GTGGGATCGGGTTCTGATGATGATGATGATGATGGTCTCGAGAATGAGAGGGAATTATGG 415
Query 527 GGGATtgatctgaatgaagaagatgtatatgtg-a--a---tgatg---at---gatga- 573
||||||||||||||||||||||||||||||||| | | ||||| || |||||
Sbjct 416 GGGATTGATCTGAATGAAGAAGATGTATATGTGAATGATGCTGATGAATATGAAGATGAC 475
Query 574 -at-atga--a-gatgatgatgTTAGTGTGACTATCCCTCTTTGTTGGGATTCACTCCAA 628
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GATGATGATGATGATGATGATGTTAGTGTGACTATCCCTCTTTGTTGGGATTCACTCCAA 535
Query 629 TTAGAAGATCGTG-AGGTAACTGCTGATGAATTTGATTGGGAAGAAGTtggtggtggtgg 687
||||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 536 TTAGAAGATCGTGGAG-TAACTGCTGATGAATTTGATTGGGAGGAAGTTGATGGTGGTGG 594
Query 688 tggtggCGGCGTGGATGATGAGAGAGAGATACGAAGTGGCTTTGCACAAATTGATATGAA 747
||| || |||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 595 TGG---CG---TGGAGGATGAGAGAGAGATACGAAGTGGCTTTGCACAAGTTGATATCAA 648
Query 748 TGACGAAAGTT-TG-----ATTTCTG-CTTCGCCAATTATCTCTTTAGAGGGTTTAGTGA 800
||||||||||| || ||||||| || ||||||||||||| ||||||| ||||||||
Sbjct 649 TGACGAAAGTTCTGTTTCGATTTCTGTCT-CGCCAATTATCTCCTTAGAGGATTTAGTGA 707
Query 801 CAAGGGAAAGAGCAGAGGGTTCGGGAAATCTAGGGTGGGAAGTTTTACTGAATCACACTC 860
|||||||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||
Sbjct 708 CAAGGGAAAGAGCAGAAGGCTCGGGAAATCTCGGGTGGGAAGTTTTGCTGAATCATACTC 767
Query 861 TAGAGATCAACTTTGATGTGGATAACAGAGAGCTGTACATTGGTGGTGATCATGACGATT 920
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 768 TTGAGATCAACTTTGATGTGGAAAACAGAGAGCTGTATATTGGTGGTGATCATGACGATT 827
Query 921 ATGTTCAAGACTATGATATGTTGTTTGAACAGTTTGCCGATGCTGAGGTATCCGTTATTG 980
|| ||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| |
Sbjct 828 ATATTCAAGAGTATGAGATGTTGTTTGAACAGTTTGCCGATGCTGAGATTTCCGTTATCG 887
Query 981 GTTTACCTCCGACTTCCAAATCTTTTCTCAACAATCTCCC-AGTGGTTCTACTAGAAGGT 1039
|||||||||| |||||||||||||| ||||| | |||||| | |||||| | | ||||||
Sbjct 888 GTTTACCTCCTACTTCCAAATCTTTCCTCAAGAGTCTCCCTA-TGGTTCGAATTGAAGGT 946
Query 1040 GAGAACGATGATGATGGTGGTTTGGTTTGTGCAGTTTGTAAAGATGAGATGAATATCGGA 1099
|||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 947 GAGATCGATGATGATGATGGTGTGGTTTGTGCAGTTTGTAAAGATGAGATGAATATCGGG 1006
Query 1100 AACAAAGCGGTTCAACTGCCATGTAATCATAAGTACCATAGCGAATGCATTGTACCGTGG 1159
||| |||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1007 AACGAAGCTGTTCAATTGCCTTGTAATCATAAGTACCATAGTGAATGCATTGTACCGTGG 1066
Query 1160 CTCAAAGTAAGGAACACATGTCCTGTTTGTCGTTATGAGTTGCCTACAGATGATGCAGAG 1219
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1067 CTCAAAGTAAGGAACACATGTCCTGTTTGTCGTTATGAACTGCCTACTGATGATGCAGAG 1126
Query 1220 TATGAGCAGAGGAAGACTC-AGAGAACAACAAATACTTTTGGCATGGTTCTGTAAATGGT 1278
|||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TATGAGCAAAGGAAGA-TCCAGAGAACAACAAATACTTTTGGCATGGTTCTGTAAATGGT 1185
Query 1279 AAACATCATCCTCGATA 1295
|||||||||||||||||
Sbjct 1186 AAACATCATCCTCGATA 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5