BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G08141.1

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487648 jgi|Araly1|487648|fgenesh2_kg.6__782__AT5G08141.1          209    1e-53


> Ahg487648 jgi|Araly1|487648|fgenesh2_kg.6__782__AT5G08141.1
Length=279

 Score =  209 bits (113),  Expect = 1e-53
 Identities = 136/147 (93%), Gaps = 2/147 (1%)
 Strand=Plus/Plus

Query  70   TACCATCATCAACAACCGA-ATGTTGTGACGGATGAAGAGAAGAGGTTAAGGAGAATGGC  128
            |||| |||||||||||| |  ||||||||||||| |||||||||||||||||||| ||||
Sbjct  4    TACCGTCATCAACAACC-ATTTGTTGTGACGGATCAAGAGAAGAGGTTAAGGAGACTGGC  62

Query  129  GTCTAATCGAGAATCAGCAAGAAGAACGCGGATGCGTGAGCGGATGATGAAAGAGGGGTT  188
            | ||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||
Sbjct  63   GACTAATCGAGAATCAGCAAGAAGATCGCGGATGCGTGAGAGGATGATGAAAGAAGTGTT  122

Query  189  GCAAATGCAAGTAAAACAACTCATGGC  215
            |||||||||||||||||||||||||||
Sbjct  123  GCAAATGCAAGTAAAACAACTCATGGC  149


 Score =  209 bits (113),  Expect = 1e-53
 Identities = 123/128 (96%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  249  CTTGTTGGAGTACAATCACCAGATCTTGCAAGAGAATTCACAGCTCAAAGAGACAGTTTC  308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  CTTGTTGGAGTACAATCACCAGATCTTGCAAGAGAATTCACAGCTCAAAGAGACAGTTTC  209

Query  309  ATCCTTTCATGATCAATATACTATATCTTATGGAAACCATGAAGGTATACTTGGAAACAC  368
             |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  210  TTCCTTTTATAATCAATATACTATATCTTATGGAAACCATGAAGATATACTTGGAAACAT  269

Query  369  CAATGATT  376
            ||||||||
Sbjct  270  CAATGATT  277



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14880679710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5