BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G08150.1

Length=691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940278 jgi|Araly1|940278|scaffold_600822.1                        658    0.0  


> Ahg940278 jgi|Araly1|940278|scaffold_600822.1
Length=463

 Score =  658 bits (356),  Expect = 0.0
 Identities = 426/458 (93%), Gaps = 12/458 (3%)
 Strand=Plus/Plus

Query  120  AAAATGGAGTCTGCAAACATCTTTGGATCCGATGAGGATTGTCGCAGCTGTGAATCTGGA  179
            ||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct  18   AAAATGGAGTCAGCAAACATCTTTGGATCCGATGAGGATGGTCGTAGCTGTGAATCTGGA  77

Query  180  TGGACGATGTATTTAGCCTCACAGTCCCATGATCGTGACGACGATTGTTACTATGGTGAT  239
            |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||
Sbjct  78   TGGACGATGTATTTAGCCTCGCAGTCCCATGATCATGACGACGACTGTTACTATGATGAT  137

Query  240  GATGATGAAGAAGAAGAAGATAGCGATGGTGGTGATTCAATGGATTCTGATGCATCTTCT  299
            ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  138  GATGACGAAGAAGCAGAAGATAGCGATGGTGGTGATTCAATGGATTCCGATGCATCTTCT  197

Query  300  GGTCCCATGGAAGCCACATCATATCTCAAACTTGCTCAAGAGATTGAGGAGCAAAACTCT  359
            ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct  198  GGTCCAATGGAAGCCACATCATCTCTCAAACTTGCGCAAGAGATTGAGGAGCAAAACTCT  257

Query  360  ATAAAGAAGAAGAAGAAAAAGACTAATGAAGAGATGGTTTTGGTGGAGACTACTAGGGTT  419
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  258  ATAAAGAAGAAGAAGAAAAGGACTAATGAAGAGATGGTTTTGGTGGAGACTACTAGGGTT  317

Query  420  CACAACAACATTAATCatgatgatgatgatgatgatgacgaagatgatggggataatcat  479
            ||||||| |||    |||  ||||||||| |||||   |||   ||||||||||||||||
Sbjct  318  CACAACACCAT----CAT--TGATGATGACGATGA---CGA---TGATGGGGATAATCAT  365

Query  480  gattatgatgatggtaatgatAGCTACAGTGTAGTTCATAGCTACGTTGGTTCGGTTAGA  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct  366  GATTATGATGATGGTAATGATAGCTACAGTGTAGTTCATAGCTACGTTGGTTCAGTTATA  425

Query  540  CAAAAAGGGTTAGTTTGATTTTATATAATGATTTTGTG  577
            ||||||||||||||||||||||||||| ||| ||||||
Sbjct  426  CAAAAAGGGTTAGTTTGATTTTATATAGTGACTTTGTG  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25389862722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5