BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08160.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487651 jgi|Araly1|487651|fgenesh2_kg.6__785__AT5G08160.1 1906 0.0
> Ahg487651 jgi|Araly1|487651|fgenesh2_kg.6__785__AT5G08160.1
Length=1345
Score = 1906 bits (1032), Expect = 0.0
Identities = 1126/1171 (96%), Gaps = 8/1171 (1%)
Strand=Plus/Plus
Query 124 ATCGATTCGTTGGTCAAGAGGAGATTGTGC---GTGTGATTCGTGAGCATGGGCTGTTCG 180
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATCGATTCGTTGGTCAAGAGGAGACTGTGCGTAGTGTGATTCGTGAGCATGGGCTGTTCG 60
Query 181 TTTTCAGGATTGAACGCACTTTACGACGCCGTCAACGGTGGAGGTGACGTATGGATCAAT 240
||||| ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 61 TTTTCGGGATTGAACGCGCTTTACGACGCCGTCAACGGCGGAGGCGACGTCTGGATCAAT 120
Query 241 GAGAATCGATTCAGGATCGTGAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTG 300
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAATCGGTTCAGGATCGTCAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTG 180
Query 301 GTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAA 240
Query 361 GTCAAGGATCCGGCTCATCTCTCCGCTGACGGAACTTATGCTATGAAGAAAGTTTTGATT 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GTCAAGGATCCGGCTCATCTCTCCGCTGATGGAACTTATGCTATGAAGAAAGTTTTGATT 300
Query 421 CAGAACAAGGAGCAATTGGAATTGGTGCGTGAGGAGATCCGTGTTTCTTCATTGTTCAAT 480
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 301 CAGAACAAGGAGCAATTGGAATTGGTGCGGGAGGAGATCCGTGTTTCATCATTGTTCAAT 360
Query 481 CACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAG 420
Query 541 GGAGCTTGGAAACACGAGGCCTTCTTGCTGTTTCCTGTTCACTTGGATGGGACCTTGCTG 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GGAGCTTGGAAACACGAGGCCTTCTTGCTATTTCCTGTTCACTTGGATGGGACCTTGCTG 480
Query 601 GATAATTTCACTTTGATGAAGGCTAAAAAAGAAACTTTCTCAACAACTGATGTTTTGCAC 660
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 481 GATAATTTCACTTTGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTTTTGCAC 540
Query 661 ATATTCCGTCAGCTTTGTGATGGACTTAAACACATGCACTCTCTGGAGCCACCATATGCT 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 541 ATATTCCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCCACCTTATGCT 600
Query 721 CACAACGATGTCAAACCTGGCAACGTCCTTTTAACACGTAGAAAAGGACAGCCTCCTCTT 780
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 601 CACAACGATGTCAAACCTGGAAACGTGCTTTTAACACGTAGAAAAGGACAGCCTCCTCTT 660
Query 781 GCGATATTGATGGACTTTGGAAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAA 840
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCGATTTTGATGGACTTTGGGAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAA 720
Query 841 GAGGCCTTACAGTTACAGGAATGGACATCTGAGCATTGCTCAGCACCGTTTCGAGCTCCC 900
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 GAGGCCTTACAATTACAGGAATGGACATCTGAGCATTGTTCAGCACCGTTTCGAGCTCCC 780
Query 901 GAGCTCTGGGATTGCCCAAGCCATGCTGATATTGATGAGAGAACAGATATCTGGTCACTA 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 GAGCTCTGGGATTGCCCAAGCCATGCTGATATTGACGAGAGAACAGATATCTGGTCACTA 840
Query 961 GGCTGCACATTATATGCAATAATGTATGGTGTGTCTCCATTCGAGTATGCGCTTGGAGAA 1020
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 841 GGCTGCACATTATATGCAATAATGTACGGTGTGTCTCCATTCGAGTATGCTCTTGGAGAA 900
Query 1021 TCTGGTGGAAGTCTTCAGCTTGCAATCGTGAACGCTCAGATCAAATGGCCAAACACTGGA 1080
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 901 TCTGGTGGAAGTCTTCAGCTCGCAATCGTGAACGCTCAGATCAAGTGGCCAAACACTGGA 960
Query 1081 CCAAAAGCTTCTTACCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAA 1140
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCAAAGGCTTCTTATCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAG 1020
Query 1141 GCTGCTGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAATTGATCGCTAAA 1200
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 GCTGCGGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAGTTGATCGCTAAA 1080
Query 1201 TTCACCAAATGATTCCCGAATTATGTTGGTTTTCaaaaaaaGGTGAAAGGAAAGAAAAGA 1260
|||||||||||||| || ||||||| |||||||| ||||| |||||||||| |||||||
Sbjct 1081 TTCACCAAATGATTTCCTAATTATGGTGGTTTTCCAAAAA-GGTGAAAGGAG-GAAAAGA 1138
Query 1261 A---GACTCTTTATACATTGCTTTGTCTCtt 1288
| |||||||||||||||||||||||||||
Sbjct 1139 AAAAGACTCTTTATACATTGCTTTGTCTCTT 1169
Score = 187 bits (101), Expect = 2e-46
Identities = 163/190 (86%), Gaps = 15/190 (8%)
Strand=Plus/Plus
Query 1357 TTG-CTCTTCGTAATGTATTTTGAACTTTTTAGGATTCGGGGTTTTCTTTTTGACTATGG 1415
||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1161 TTGTCTCTTCGTAATGTATTTTGAACTATTTAGGATTCGGGGTCTTCTTTTTGACTATGG 1220
Query 1416 GAAGTTGTGAACCAATAAATTTACTTAA-G-ACAGTATATCTCGTAGTTGTCCTAATTCT 1473
|||||||||||||||||||||||||||| | ||| |||| | |||||||| |||||||
Sbjct 1221 GAAGTTGTGAACCAATAAATTTACTTAAAGGACAATATAAAT--TAGTTGTCTTAATTCT 1278
Query 1474 GGTCGATGATG-CTG-TAATGC-TATTATAATTTTGTGCTGATTCATA--T-T-TTAATT 1526
|| | || ||| | | | |||| | |||||| |||||||||||| | | | | ||||||
Sbjct 1279 GGACAAT-ATGTC-GATGATGCGT-TTATAAATTTGTGCTGATTAAAAAATATATTAATT 1335
Query 1527 ATAACCATAG 1536
||||||||||
Sbjct 1336 ATAACCATAG 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5