BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08170.1
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487652 jgi|Araly1|487652|fgenesh2_kg.6__786__AT5G08170.1 2056 0.0
> Ahg487652 jgi|Araly1|487652|fgenesh2_kg.6__786__AT5G08170.1
Length=1321
Score = 2056 bits (1113), Expect = 0.0
Identities = 1254/1323 (95%), Gaps = 5/1323 (0%)
Strand=Plus/Plus
Query 28 TCTCTCACAAAAACATCGTGAAGAATGGAGGAGTCACGAGAATCGCCGGCGGAACACGGC 87
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCACAAAAACATCGTAAAAAATGGAGGAGTCACGAGAATCGCCGGCGGAACACGGC 60
Query 88 TACTACATGCCGGCGGAATGGGATTCTCATGCTCAAACTTGGATCGGTTGGCCTGAACGG 147
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TACTACATGCCGGCGGAATGGGAACCTCATGCTCAAACTTGGATCGGTTGGCCTGAACGG 120
Query 148 CAAGATAACTGGCGGCACAACGCTTTACCCGCACAACGAGTGTTTGCAGATGTTGCAAAG 207
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CAAGATAACTGGCGGCACAACGCTTTACCCGCACAGCGAGTGTTTGCAGATGTTGCAAAG 180
Query 208 GCCATCTCAAAGTTCGAGCCTGTCACTGTCTGTGCTAGCCCTGCTCAGTGGGAAAATGCA 267
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 GCCATCTCAAAGTTCGAGCCTGTGACTGTCTGTGCAAGCCCTGCTCAGTGGGAAAATGCA 240
Query 268 AGGAAACAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTC 327
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGAAGCAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTC 300
Query 328 CGCGACTCTGGACCAACTTTCATTGTACGGAAAAGACCAGTAAAGCTCAGTTCTCTTAAC 387
|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 301 CGCGACTCTGGACCAACTTTCATTGTGCGGAAAAGACCATTCAAGCTCAGTTCTCTTAAC 360
Query 388 CGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGT 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGT 420
Query 448 TACAATGATTGGAGTCATGACCTTTTAGTTTCACGAAAGATTCTCGCTTTGGAACGAATT 507
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 421 TACAATGATTGGAGTCATGACCTTCTAGTTTCACGAAAGATTCTCGCTTTGGAACGGATT 480
Query 508 CCAAGATTTCAACATTCGATGATTCTTGAAGGAGGCAGCATCCATGTCGATGGGGAAGGA 567
||| |||||||||||||||||||||||||||| ||||||||||| || || |||||||||
Sbjct 481 CCACGATTTCAACATTCGATGATTCTTGAAGGGGGCAGCATCCACGTAGACGGGGAAGGA 540
Query 568 ACCTGCCTTGTCACAGAAGAGTGTCTCTTGAACAAAAACCGAAACCCTCATATGAGTAAA 627
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 ACCTGCCTAGTCACAGAAGAGTGTCTCCTGAACAAAAACCGAAACCCTCATATGAGTAAA 600
Query 628 GAGCAAATAGAGGAAGAACTTAAGAAGTACCTCGGAGTACAATCATTTATCTGGCTTCCT 687
|||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||
Sbjct 601 GAGCAAATAGAGGAAGAACTAAAGAAGTATCTCGGAGTAAAAACATTTATCTGGCTTCCT 660
Query 688 CGTGGTCTTTACGGGGATGAGGACACAAATGGTCACATTGATAACATGTGCTGCTTCGCT 747
|||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 661 CGTGGTCTTTACGGTGACGAGGACACAAACGGTCACATTGACAACATGTGCTGCTTCGCT 720
Query 748 AGACCGGGAGTTGTGTTATTGTCTTGGACAGACGATGAAACCGATCCTCAATACGAAAGG 807
||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 721 AGACCTGGAGTTGTGTTATTGTCTTGGACAGATGATGAAATTGATCCTCACTACGAAAGG 780
Query 808 TCTGTGGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTCGTGGAAGGAAGATTCAA 867
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 TCTGTAGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTTGTGGAAGGAAGATTCAA 840
Query 868 GTCATTAAACTTTATATCCCGGAACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATC 927
|||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 GTCATTAAACTTCACATTCCGGGACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATC 900
Query 928 ACTCAGGATGGTGAAGCTATACCAAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTG 987
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 ACTCAGGACGGTGAAGCTATACCCAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTG 960
Query 988 AATTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGAT 1047
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AACTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGAT 1020
Query 1048 AAAGAAGCGATTCGTGTCCTCTCGGATACATTTCCTCATCACTCGGTTGTGGGAATCGAG 1107
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGAAGCAATTCGTGTCCTCTCGGAGACATTTCCTCATCACTCGGTTGTGGGAATCGAG 1080
Query 1108 AATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATTCATTGTATAACGCAGCAGCAGCCG 1167
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 1081 AATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATACATTGTATAACGCAGCAACAACCG 1140
Query 1168 GCGGAGCCTACTTCCGTCGCCGAAAATGGCCACTGAC--TGT-CTCTGCGCGCCACCGAG 1224
|||||||||| ||||||||| || || |||||||||| ||| ||| |||| | |||||
Sbjct 1141 GCGGAGCCTAGTTCCGTCGCTGAGAACGGCCACTGACGGTGTTCTCCACGCGGCGCCGAG 1200
Query 1225 GGATTTATGAATCCTGGCCGTTGATATTTTAAAATACAGATTTGAAGCTTGAGGACGAAC 1284
||||| ||||||||||| ||||||| ||||||| ||||||||||| | |||||||||||
Sbjct 1201 GGATTGATGAATCCTGGTCGTTGATTTTTTAAA-TACAGATTTGATTCGTGAGGACGAAC 1259
Query 1285 GAGAGCCGTTCATTAATTGGATCCTGTATTTTATGGTTCGTTGACTAAGAAATATATTAT 1344
|||||| |||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1260 GAGAGCTGTTCGTTAATTGGATCCTGTATCT-ATGGTTCGTTGACTAAGAAATATATTAT 1318
Query 1345 TGG 1347
|||
Sbjct 1319 TGG 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5