BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G08180.1

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940281 jgi|Araly1|940281|scaffold_600825.1                        778    0.0  


> Ahg940281 jgi|Araly1|940281|scaffold_600825.1
Length=513

 Score =  778 bits (421),  Expect = 0.0
 Identities = 467/490 (95%), Gaps = 0/490 (0%)
 Strand=Plus/Plus

Query  78   AAATATGGGAAGCGATACCGAAGCAGAGAAGTCGATTCAAAAGGAGAAGAAGAAGTACGC  137
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  18   AAATATGGGAAGCGATACCGAAGCAGAGAAGTCGATTCAAAAGGAGAAGAAGAAGTTCGC  77

Query  138  TATTACTCTTGCTCCTATCGCTAAACCTCTCGCCGGCAAAAAACTCCAGAAGAGAACTTT  197
            |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  78   TATTTCTCTTGCTCCTATCGCTAAACCTCTTGCCGGCAAAAAACTCCAGAAGAGAACTTT  137

Query  198  CAAACTCATTCAAAAAGCTGCTGGGAAGAAATGTTTGAAGAGAGGAGTTAAAGAAGTGGT  257
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  138  CAAACTCATTCAAAAAGCTGCTGGGAAGAAATGTTTAAAGAGAGGAGTTAAAGAAGTGGT  197

Query  258  TAAGAGCATAAGACGAGGCCAGAAAGGATTATGTGTAATAGCTGGAAACATTTCACCTAT  317
            ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct  198  TAAGAGCATAAGACGTGGCCAGAAAGGATTATGTGTTATAGCTGGAAACATATCACCCAT  257

Query  318  TGATGTTATTACTCATCTTCCAATCTTGTGTGAGGAGGCTGGTGTTCCTTATGTATACGT  377
            |||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  258  TGATGTGATTACGCATCTTCCAATCTTGTGTGAGGAAGCTGGTGTTCCTTACGTATACGT  317

Query  378  TCCTTCAAAAGAAGATCTTGCGCAAGCAGGGGCAACGAAACGACCAACATGTTGTGTCTT  437
            ||| || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct  318  TCCATCCAAAGAAGATCTCGCGCAGGCCGGGGCAACGAAACGACCAACATGTTGTGTCTT  377

Query  438  GGTAATGCTTAAACCTGCGAAAGGAGATTTAACTGCAGAAGAACTTGCAAAGTTAAAGAC  497
            ||| ||||||||||| ||||||||||| |||||||| ||||| |||| ||||||||||||
Sbjct  378  GGTCATGCTTAAACCGGCGAAAGGAGACTTAACTGCGGAAGAGCTTGAAAAGTTAAAGAC  437

Query  498  AGACTACGAACAAGTCTCTGACGATATTAAGGAGCTAGCAACTTCTGTAATCTGATTAGA  557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  AGACTACGAACAAGTCTCTGACGATATTAAGGAGCTAGCAACTTCTGTAATCTGATTAGA  497

Query  558  AACTAGAATG  567
            ||||||||||
Sbjct  498  AACTAGAATG  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27296008572


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5