BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08190.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487654 jgi|Araly1|487654|fgenesh2_kg.6__788__AT5G08190.1 994 0.0
Ahg489163 jgi|Araly1|489163|fgenesh2_kg.6__2297__AT5G23090.2 470 1e-131
> Ahg487654 jgi|Araly1|487654|fgenesh2_kg.6__788__AT5G08190.1
Length=887
Score = 994 bits (538), Expect = 0.0
Identities = 825/949 (87%), Gaps = 78/949 (8%)
Strand=Plus/Plus
Query 3 TTCTGGTCTTATGtttttttGCCCTAATCGACTTCTGCGTAGAGAAACCG-AAAAAGGAG 61
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TTCTGGTCTTATGTTTTTTTGCCCTAATCGACTTCTGCGTAGAGAAACCGAAAAAAGGAG 60
Query 62 AGAGAAAATCCGCCGATAAGAT-TCCGT--------A-CGACTGCACGTCTCCGATCTCG 111
|||||||||||||||||||||| ||||| | ||||| ||||||||||||||||
Sbjct 61 AGAGAAAATCCGCCGATAAGATATCCGTACAACCCGACCGACTTCACGTCTCCGATCTCG 120
Query 112 CCGTGAATCTGTCTCGAGAGTCTGTTAACTCACCGGATCTCCGTCGTTGATCTGCCTCTG 171
|||||| || ||||||||| |||||||||| | | ||||||||||| | || | |
Sbjct 121 CCGTGACTCGGTCTCGAGATTCTGTTAACT---C-G----CCGTCGTTGATATCCCACCG 172
Query 172 TTTCGATCCGT-GTTAAACTCGATTTAAAACTATGGATCCGATGGATATAGTTGGAAAAT 230
||||||||| | | |||| || || | | || ||||||||||||||||||||||||||||
Sbjct 173 TTTCGATCC-TCGGTAAAGTCTATCTCATACGATGGATCCGATGGATATAGTTGGAAAAT 231
Query 231 CAAAGGAAGATGCTTCGCTTCCGAAAGCTACCATGACGAAAATTATAAAGGAGATGTTAC 290
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 232 CAAAGGAAGATGCTTCGCTTCCTAAAGCTACCATGACGAAAATTATAAAGGAGATGTTAC 291
Query 291 CCGCAGATGTTCGTGTTGCTAGAGATGCTCAAGATCTATTGATTGAGTGTTGTGTAGAGT 350
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 292 CCGCAGAGGTTCGTGTTGCTAGAGATGCTCAAGATCTATTGATTGAGTGTTGCGTAGAGT 351
Query 351 TCATAAATCTTATATCGTCGGAGTCGAATGAAGTGTGTAACAAAGAGGATAAACGAACAA 410
|||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 352 TCATAAATCTTATATCCTCGGAGTCTAACGAAGTATGTAACAAAGAGGATAAACGAACAA 411
Query 411 TAGCCCCTGAGCACGTACTCAAAGCTTTACAGGTTCTTGGCTTTGGGGAATACGTAGAAG 470
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 412 TCGCCCCTGAGCACGTACTCAAAGCTTTACAGGTTCTCGGCTTTGGGGAATACGTCGAAG 471
Query 471 AAGTTTATGCCGCGTATGAGCAACATAAATATGAAACCATGCAGGATTCGCAGAGAAGTG 530
|||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 472 AAGTCTATGCCGCTTATGAGCAACATAAATATGAAACCATGCAAGATTCACAGAGAAGCG 531
Query 531 TGAAGATGAATAGCGGAGCAGAGATGACGGAAGAAGAGGCGGCAGCGGAACAACAGAGGA 590
|||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 532 TGAAGATGAACAGCGGAGCAGAGATGACGGAAGAAGAAGCAGCAGCGGAACAACAGAGAA 591
Query 591 TGTTTGCAGAAGCTCGAGCAAGAATGAATGGAGGTGTTACAGTTCCTCAACCAGAGCAAC 650
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 592 TGTTTGCCGAAGCTCGAGCAAGAATGAATGGAGGTGTTTCAGTTCCTCAACCAGAGCAAC 651
Query 651 TAGAAGAACCCcaacaacaacaacaaacaaGTCTACAAAGCTAATCAACAAAACCGCAAA 710
|||||||| | | | || ||||||||||||||||||||||||||||||
Sbjct 652 TAGAAGAA----A-C--C--CAGCAAACAAGTCTACAAAGCTAATCAACAAAA------- 695
Query 711 GGAATCCCTTATTTTAACATTATCCTTTTGACTTCTTTTTCTTTCTAGCAATATCTCTGT 770
| || ||| ||||||||||||||||||| ||||| | || | | ||
Sbjct 696 ----T---TT-TTT-AACATTATCCTTTTGACTTGTTTTT-T--CT--C--T------GT 733
Query 771 AAAGTGCAAAATTCGTCGCGTCTTGGTGTTGATATGCTCTTTACATTTTTT---AACTTA 827
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 734 AAAGTGCAAAATTCGTCGCGTCTTGGTGTTGATATGCTCTTTACATTTTTTTTTAACCTA 793
Query 828 GGGTTGTGTTTTTTCCCCTTTCTTTGAATCTAAAATCACTTAGGTGATTCAGATGTAATT 887
| |||||||||| || ||| || | |||||| |||||||| |||||||||
Sbjct 794 GATTTGTGTTTTT-CC--TTT-----AA---A---TCACTTTGGTGATTCTGATGTAATT 839
Query 888 AGTAAGGTTTTTATTGAATCTTAGCAACTAG-TGTCATTCGAATCCAAA 935
|||||||||| | |||||||||||||||||| | ||||| |||||||||
Sbjct 840 AGTAAGGTTTGTCTTGAATCTTAGCAACTAGCT-TCATTTGAATCCAAA 887
> Ahg489163 jgi|Araly1|489163|fgenesh2_kg.6__2297__AT5G23090.2
Length=992
Score = 470 bits (254), Expect = 1e-131
Identities = 394/462 (85%), Gaps = 8/462 (2%)
Strand=Plus/Plus
Query 198 AAACTATGGATCCGATGGATATAGTTGGAAAATCAAAGGAAGATGCTTCGCTTCCGAAAG 257
|||| |||||||| ||||||||||| || ||||| |||||||| ||||| ||||| ||||
Sbjct 214 AAACAATGGATCCAATGGATATAGTCGGCAAATCCAAGGAAGACGCTTCTCTTCCAAAAG 273
Query 258 CTACCATGACGAAAATTATAAAGGAGATGTTACC-CGCAGATGTTCGTGTTGCTAGAGAT 316
| || ||||| || |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 274 CGACGATGACTAAGATTATAAAGGAGATGTTACCAC-CAGATGTTCGTGTTGCTAGAGAT 332
Query 317 GCTCAAGATCTAT-TGATTGAGTGTTGTGTAGAGTTCATAAATCTTATATCGTCGGAGTC 375
||||||||||| | | ||||| |||||||||||||| ||||||||| |||| || || ||
Sbjct 333 GCTCAAGATCT-TCTAATTGAATGTTGTGTAGAGTTTATAAATCTTGTATCTTCAGAATC 391
Query 376 GAATGAAGTGTGTAACAAAGAGGATAAACGAACAATAGCCCCTGAGCACGTACTCAAAGC 435
||||| || |||||||||||||||||||| || || || |||||||| || ||||| ||
Sbjct 392 TAATGATGTTTGTAACAAAGAGGATAAACGGACGATTGCTCCTGAGCATGTTCTCAAGGC 451
Query 436 TTTACAGGTTCTTGGCTTTGGGGAATACGTAGAAGAAGTTTATGCCGCGTATGAGCAACA 495
|||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||
Sbjct 452 ATTACAGGTTCTTGGTTTTGGAGAATACATTGAAGAAGTTTATGCTGCGTATGAGCAACA 511
Query 496 TAAATATGAAACCATGCAGGATTCGCAGAGAAGTGTGAAGATG-AATAGCGGAGCAGAGA 554
||| |||||||| |||||||| | |||||||| ||||| ||| ||||| ||||| | |
Sbjct 512 TAAGTATGAAACTATGCAGGACACACAGAGAAGCGTGAA-ATGGAATAGTGGAGCTCAAA 570
Query 555 TGACGGAAGAAGAGGCGGCAGCGGAACAACAGAGG-ATGTTTGCAGAAGCTCGAGCAAGA 613
|||| ||||| || || ||||| || ||||| | | |||||||||||||| || ||||||
Sbjct 571 TGACTGAAGAGGAAGCAGCAGCTGAGCAACA-ACGTATGTTTGCAGAAGCACGTGCAAGA 629
Query 614 ATGAATGGAGGTGTTACAGTTCCTCAACCAGAGCAACTAGAA 655
||||||||||||||| | ||||||||||| || || | ||||
Sbjct 630 ATGAATGGAGGTGTTTCCGTTCCTCAACCTGAACATCCAGAA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5