BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08200.1 Length=1895 Score E Sequences producing significant alignments: (Bits) Value Ahg487656 jgi|Araly1|487656|fgenesh2_kg.6__790__AT5G08200.1 2780 0.0 > Ahg487656 jgi|Araly1|487656|fgenesh2_kg.6__790__AT5G08200.1 Length=1857 Score = 2780 bits (1505), Expect = 0.0 Identities = 1782/1905 (94%), Gaps = 61/1905 (3%) Strand=Plus/Plus Query 1 ATAACTCCAATTCCACCGCTGCGACGAGAGAGGAGCACAGAGATCTCTCGTTTCGTTTTT 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATAATTCCAATTCCACCGCTGCGACGAGAGAGGAGCACAGAGATCTCTCGTTTCGTTTTT 60 Query 61 CCCGGAAAATCTGAGGAAATAA-AATTAAGCAAAAGTTTCCATCGATCCTCTGAGAAAAA 119 ||||||||||||| ||||| || || ||||||||| ||||||||||| ||||||| ||| Sbjct 61 CCCGGAAAATCTGGGGAAA-AATAA-TAAGCAAAATTTTCCATCGATTCTCTGAG--AAA 116 Query 120 ATTCGACTCTCTAGTCCACGAGttttttttttGTTCACCTCTCTCTTTTTCGTTAATCTC 179 |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| Sbjct 117 ATTCGACTCTCTAGTCCACGAG----TTTTTT-TTCACCTCTCTC-TTTTCGTTAATCTC 170 Query 180 TCTCAAACAACGCCTCTTCATCATTTCCTTGTAATTCACTTTCTTCTCCGtttttttttt 239 ||| ||||||||||||| |||||||||| | | ||||||| Sbjct 171 TCT----CAACGCCTCTTCACCATTTCCTTG----T-A---------------TTTTTTT 206 Query 240 ttttGAATCTCTCTTCGTCCTTCGCCGTTTCGATTTCTTGTTTCCTCTACTTGATGATGA 299 ||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||| Sbjct 207 TTTTGAATCTCTC-T--TCCTTCACCGTTTCGATTTCTTG-TTCCTCTACTTGATGATGC 262 Query 300 AATTTTGATCAGATCTAGTGTAGAATAGTTAGGATTTACCCAGAGAGATTATGTTTATGG 359 ||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||||| Sbjct 263 AATTTTGATCAGATCTAGTGTAGTATAGGTAGGATTTTCCCAGAGAG-TTATGTTTATGG 321 Query 360 ATCGAGAGAGACGGAGTTCTGGTCGTAATGGGACTCCTGAATATAGCAATGGCAAATTCC 419 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 322 ATCGAGAGAGACGGAGTTCTGGTCGTAATGGGACTCCTGAATATAGCAACGGCAAATTCC 381 Query 420 GAGATGATAATGGTTTTGGATTCTTAGATCGATTGGAAAATTGCCGTGAGAAGAGTCCTC 479 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 382 GAGATGATAATGGTTATGGATTCTTAGATCGATTGGAAAATTGCCGTGAGAAGAGTCCTT 441 Query 480 CTAGATCGAAGATCCTTCGGATCCCGTCTCCGACCTCGTCTCCTCCACCTTCTAGCTCTT 539 |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct 442 CTAGATCGAAGATCCTCCGGATCCCGTCGCCGACCTCGTCTCCTCCACCTTCTAGTTCTT 501 Query 540 CTCCGCCATTTCATGGTTCCAATTCGCCTGACCGTGGATATATCGAACACCGCATCTCCA 599 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 502 CTCCGCCATTTCATGGTTCCAATTCGCCTGACCGTGGATACATCGAACACCGCATCTCCA 561 Query 600 AGTTTGATACTCTCGCCGGCGTTGCCATCAAATACGGTGTTGAGGTTGCAGATGTGAAAA 659 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 562 AGTTTGATACTCTCGCCGGCATTGCCATCAAATACGGTGTTGAGGTTGCAGATGTGAAAA 621 Query 660 AGATGAATAACCTTGTTACTGATCTTCAAATGTTTGCTCTCAAGTCTCTTCAGATTCCGT 719 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 622 GGATGAATAACCTTGTTACTGATCTTCAAATGTTTGCTCTCAAGTCTCTTCAGATTCCGT 681 Query 720 TACCTGGGAGACATCCTCCTTCTCCATGTTTATCTAATGGCTCCTTAAACCATGGAGAGG 779 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 682 TACCTGGGAGGCATCCTCCTTCTCCATGTTTATCTAATGGCTCCTTAAACCATGGAGAGG 741 Query 780 GATGTTCATGCCACGAACCGGAATCACCAAACCATAGCGAACAGGAAGTGTTTGACTCAT 839 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 742 GATGTTCATGCCACGAACCGGAATCACCAAACCATAGCGACCAGGAAGTGTTTGACTCAT 801 Query 840 TTCAGTCTCTGAGATTGAAATCTTCGGAAAAGAAAGTTTCTCCAGCCATGTACTCACTGC 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 802 TTCAGTCTCTGAGATTGAAATCTTCGGAAAAGAAAGTTTCTCCAGCCATGTACTCATTGC 861 Query 900 AAGGTTATTACGGGCTAAAACCAGCAGACAGAACAGTCTCTGATGGAGGATGCTTCGAGA 959 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 862 AAGGTTATTACGGGCTAAAACCAGCAGATAGAACAGTCTCTGATGGAGGATGCTTGGAGA 921 Query 960 TGGGAAATTACAAGACGGAAACTTCTCATCATATCTTCAACAACGGTGATAACGGATATC 1019 ||||||||||||| |||||| ||||||||||| |||| ||||| |||||||||||||||| Sbjct 922 TGGGAAATTACAAAACGGAATCTTCTCATCATCTCTTTAACAATGGTGATAACGGATATC 981 Query 1020 TCAGACCTTTCCCATCCACAAATACTCCCTTAAATCACCACAGGAAATCTAGAAGCTTGG 1079 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 982 TCAGACCTTTCCCATCCACAAATACTCCCTTGAATCACCACAGGAAATCAAGAAGCTTGG 1041 Query 1080 TCAATGCGCTTATCGAAGAGGTTAACCAATCACCTGATAATAATACTCAAGAACCAA-CA 1138 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 1042 TCAATGCACTTATCGAAGAGGTTAACCAATCACCCGATAATAATACTCAAGAACCAAAC- 1100 Query 1139 TCTGATAAGTTTATGAGAAGACGCCAAAAATCTGAGGCCGATTTTTCATCCCGGACTCCA 1198 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1101 TCCGATAAGTTTATGAGAAGACGCCAAAAATCTGAGGCCGATTTTTCATCCCGGACTCCA 1160 Query 1199 GAACTTGTGTTGAAAGAAGAGAACGGTAGCAGCAATGGCGGATTTTTATCAATAGCTGGA 1258 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| Sbjct 1161 GAACTTGTGTTGAAAGAAGAGAACAGTAGCAGCAATGGCGGGTTTTTATCAATAGCCGGA 1220 Query 1259 AAAGGCTTAGCTTTGAGATCGAAAGCGTCAAGCAGAACCAATCTAGCAGCAGAATCTGAG 1318 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1221 AAAGGCTTAGCTTTGAGATCGAAAGCTTCAAGCAGAACCAATCTAGCAGCAGAATCTGAG 1280 Query 1319 AACGGTAATTTCAATCCGGTATCAATGAACTTGATGGATGCTCCAGTTTCAGACAGCTTT 1378 | ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct 1281 ACCGGTAATTTCAATCCAGTGCCAATGAACTTGATGGATGCTCCAGTTGCAGACAGCTTT 1340 Query 1379 AGCAGTGTAAGAAAATCGTCGAGTGCATCGAGTCTACAAGATCCAGATGGTAACAGCAAT 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1341 AGCAGTGTAAGAAAATCGTCGAGTGCATCGAGTCTACAAGATCCAGATGGTAACAGCAAT 1400 Query 1439 AATGGTTCGTTGTCGCTATGGCCAACGTCAAAGTGGAGCTTGAAACCGGATTTGCTTACA 1498 |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1401 AATGGTTCGTTGTCTCTATGGCCAACTTCAAAGTGGAGCTTGAAACCTGATTTGCTTACA 1460 Query 1499 CCTGCGGCCATTACAAGTTCCATCTTTGATGGATTACCAAAGCCTTTAACTGGTCGAAGA 1558 || ||||| |||||||| |||||||||||||||||||||||||||||||| || | | | Sbjct 1461 CCAGCGGCTATTACAAGCTCCATCTTTGATGGATTACCAAAGCCTTTAACAGGAAGGATA 1520 Query 1559 AACAAAACGGCTCTGGACTAAACACAAGGTCAGTTTCTGGTTATTTATAACTGCCTTATT 1618 |||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||| Sbjct 1521 AACAAAACGGCTCTGGACTAAA-A-AAGGTCAGTTTCTGGTTATTT-TAACTACCTTATT 1577 Query 1619 C-TTTTTTGGGGTACTATACAAATCAATTGTCAAAAGAAGCTATTTAGCTTAATGCGGAG 1677 | |||||||| | ||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1578 CATTTTTTGGAG-ACTATACAAATCAATCGTCAAAAGAAGCTATTTAGCTTAAGGCGGAG 1636 Query 1678 Taaatacaaaagtaaagagattagaggaaaacaaaattg-aaggaaggaagaaagaaaaa 1736 |||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| Sbjct 1637 TAAATACAAAAGTAAAGAGATTAGAG-AAAA-AAAATTGGAAGGAAGGAAGAAAGAAAAA 1694 Query 1737 cttccggaaattgaaatttataaggaagCTTCTGATGATGTAATGATTGGGTCTTTTTT- 1795 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1695 CTTCCAAAAATTGAAATTTATAAAGAAGCTTCTGATGATGTAATGATTGGGTCTTTTTTT 1754 Query 1796 ------GTAAGTT-ATATTCTGTACCATTTTCTGGGTGGGGGTTGTATCGACAAAATCTG 1848 ||||||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1755 TTTTTTGTAAGTTTATATTCTGTACCATTTTCTGGGTGCGG-TTGTATCGACAAAATCTG 1813 Query 1849 TAGCGTAGTTTTA-TTTTATTTTTGATTTAATGATACATTGTCAC 1892 ||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 1814 TAGCGTAGTTTTACTTTTATTTTT-ATTTAATGATACATTGTCAC 1857 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71190667905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5