BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08200.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487656 jgi|Araly1|487656|fgenesh2_kg.6__790__AT5G08200.1 2780 0.0
> Ahg487656 jgi|Araly1|487656|fgenesh2_kg.6__790__AT5G08200.1
Length=1857
Score = 2780 bits (1505), Expect = 0.0
Identities = 1782/1905 (94%), Gaps = 61/1905 (3%)
Strand=Plus/Plus
Query 1 ATAACTCCAATTCCACCGCTGCGACGAGAGAGGAGCACAGAGATCTCTCGTTTCGTTTTT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAATTCCAATTCCACCGCTGCGACGAGAGAGGAGCACAGAGATCTCTCGTTTCGTTTTT 60
Query 61 CCCGGAAAATCTGAGGAAATAA-AATTAAGCAAAAGTTTCCATCGATCCTCTGAGAAAAA 119
||||||||||||| ||||| || || ||||||||| ||||||||||| ||||||| |||
Sbjct 61 CCCGGAAAATCTGGGGAAA-AATAA-TAAGCAAAATTTTCCATCGATTCTCTGAG--AAA 116
Query 120 ATTCGACTCTCTAGTCCACGAGttttttttttGTTCACCTCTCTCTTTTTCGTTAATCTC 179
|||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||
Sbjct 117 ATTCGACTCTCTAGTCCACGAG----TTTTTT-TTCACCTCTCTC-TTTTCGTTAATCTC 170
Query 180 TCTCAAACAACGCCTCTTCATCATTTCCTTGTAATTCACTTTCTTCTCCGtttttttttt 239
||| ||||||||||||| |||||||||| | | |||||||
Sbjct 171 TCT----CAACGCCTCTTCACCATTTCCTTG----T-A---------------TTTTTTT 206
Query 240 ttttGAATCTCTCTTCGTCCTTCGCCGTTTCGATTTCTTGTTTCCTCTACTTGATGATGA 299
||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 207 TTTTGAATCTCTC-T--TCCTTCACCGTTTCGATTTCTTG-TTCCTCTACTTGATGATGC 262
Query 300 AATTTTGATCAGATCTAGTGTAGAATAGTTAGGATTTACCCAGAGAGATTATGTTTATGG 359
||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||
Sbjct 263 AATTTTGATCAGATCTAGTGTAGTATAGGTAGGATTTTCCCAGAGAG-TTATGTTTATGG 321
Query 360 ATCGAGAGAGACGGAGTTCTGGTCGTAATGGGACTCCTGAATATAGCAATGGCAAATTCC 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 322 ATCGAGAGAGACGGAGTTCTGGTCGTAATGGGACTCCTGAATATAGCAACGGCAAATTCC 381
Query 420 GAGATGATAATGGTTTTGGATTCTTAGATCGATTGGAAAATTGCCGTGAGAAGAGTCCTC 479
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GAGATGATAATGGTTATGGATTCTTAGATCGATTGGAAAATTGCCGTGAGAAGAGTCCTT 441
Query 480 CTAGATCGAAGATCCTTCGGATCCCGTCTCCGACCTCGTCTCCTCCACCTTCTAGCTCTT 539
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 442 CTAGATCGAAGATCCTCCGGATCCCGTCGCCGACCTCGTCTCCTCCACCTTCTAGTTCTT 501
Query 540 CTCCGCCATTTCATGGTTCCAATTCGCCTGACCGTGGATATATCGAACACCGCATCTCCA 599
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 502 CTCCGCCATTTCATGGTTCCAATTCGCCTGACCGTGGATACATCGAACACCGCATCTCCA 561
Query 600 AGTTTGATACTCTCGCCGGCGTTGCCATCAAATACGGTGTTGAGGTTGCAGATGTGAAAA 659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGTTTGATACTCTCGCCGGCATTGCCATCAAATACGGTGTTGAGGTTGCAGATGTGAAAA 621
Query 660 AGATGAATAACCTTGTTACTGATCTTCAAATGTTTGCTCTCAAGTCTCTTCAGATTCCGT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GGATGAATAACCTTGTTACTGATCTTCAAATGTTTGCTCTCAAGTCTCTTCAGATTCCGT 681
Query 720 TACCTGGGAGACATCCTCCTTCTCCATGTTTATCTAATGGCTCCTTAAACCATGGAGAGG 779
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TACCTGGGAGGCATCCTCCTTCTCCATGTTTATCTAATGGCTCCTTAAACCATGGAGAGG 741
Query 780 GATGTTCATGCCACGAACCGGAATCACCAAACCATAGCGAACAGGAAGTGTTTGACTCAT 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 742 GATGTTCATGCCACGAACCGGAATCACCAAACCATAGCGACCAGGAAGTGTTTGACTCAT 801
Query 840 TTCAGTCTCTGAGATTGAAATCTTCGGAAAAGAAAGTTTCTCCAGCCATGTACTCACTGC 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 802 TTCAGTCTCTGAGATTGAAATCTTCGGAAAAGAAAGTTTCTCCAGCCATGTACTCATTGC 861
Query 900 AAGGTTATTACGGGCTAAAACCAGCAGACAGAACAGTCTCTGATGGAGGATGCTTCGAGA 959
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 862 AAGGTTATTACGGGCTAAAACCAGCAGATAGAACAGTCTCTGATGGAGGATGCTTGGAGA 921
Query 960 TGGGAAATTACAAGACGGAAACTTCTCATCATATCTTCAACAACGGTGATAACGGATATC 1019
||||||||||||| |||||| ||||||||||| |||| ||||| ||||||||||||||||
Sbjct 922 TGGGAAATTACAAAACGGAATCTTCTCATCATCTCTTTAACAATGGTGATAACGGATATC 981
Query 1020 TCAGACCTTTCCCATCCACAAATACTCCCTTAAATCACCACAGGAAATCTAGAAGCTTGG 1079
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 982 TCAGACCTTTCCCATCCACAAATACTCCCTTGAATCACCACAGGAAATCAAGAAGCTTGG 1041
Query 1080 TCAATGCGCTTATCGAAGAGGTTAACCAATCACCTGATAATAATACTCAAGAACCAA-CA 1138
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1042 TCAATGCACTTATCGAAGAGGTTAACCAATCACCCGATAATAATACTCAAGAACCAAAC- 1100
Query 1139 TCTGATAAGTTTATGAGAAGACGCCAAAAATCTGAGGCCGATTTTTCATCCCGGACTCCA 1198
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TCCGATAAGTTTATGAGAAGACGCCAAAAATCTGAGGCCGATTTTTCATCCCGGACTCCA 1160
Query 1199 GAACTTGTGTTGAAAGAAGAGAACGGTAGCAGCAATGGCGGATTTTTATCAATAGCTGGA 1258
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 1161 GAACTTGTGTTGAAAGAAGAGAACAGTAGCAGCAATGGCGGGTTTTTATCAATAGCCGGA 1220
Query 1259 AAAGGCTTAGCTTTGAGATCGAAAGCGTCAAGCAGAACCAATCTAGCAGCAGAATCTGAG 1318
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1221 AAAGGCTTAGCTTTGAGATCGAAAGCTTCAAGCAGAACCAATCTAGCAGCAGAATCTGAG 1280
Query 1319 AACGGTAATTTCAATCCGGTATCAATGAACTTGATGGATGCTCCAGTTTCAGACAGCTTT 1378
| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1281 ACCGGTAATTTCAATCCAGTGCCAATGAACTTGATGGATGCTCCAGTTGCAGACAGCTTT 1340
Query 1379 AGCAGTGTAAGAAAATCGTCGAGTGCATCGAGTCTACAAGATCCAGATGGTAACAGCAAT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 AGCAGTGTAAGAAAATCGTCGAGTGCATCGAGTCTACAAGATCCAGATGGTAACAGCAAT 1400
Query 1439 AATGGTTCGTTGTCGCTATGGCCAACGTCAAAGTGGAGCTTGAAACCGGATTTGCTTACA 1498
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1401 AATGGTTCGTTGTCTCTATGGCCAACTTCAAAGTGGAGCTTGAAACCTGATTTGCTTACA 1460
Query 1499 CCTGCGGCCATTACAAGTTCCATCTTTGATGGATTACCAAAGCCTTTAACTGGTCGAAGA 1558
|| ||||| |||||||| |||||||||||||||||||||||||||||||| || | | |
Sbjct 1461 CCAGCGGCTATTACAAGCTCCATCTTTGATGGATTACCAAAGCCTTTAACAGGAAGGATA 1520
Query 1559 AACAAAACGGCTCTGGACTAAACACAAGGTCAGTTTCTGGTTATTTATAACTGCCTTATT 1618
|||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||
Sbjct 1521 AACAAAACGGCTCTGGACTAAA-A-AAGGTCAGTTTCTGGTTATTT-TAACTACCTTATT 1577
Query 1619 C-TTTTTTGGGGTACTATACAAATCAATTGTCAAAAGAAGCTATTTAGCTTAATGCGGAG 1677
| |||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1578 CATTTTTTGGAG-ACTATACAAATCAATCGTCAAAAGAAGCTATTTAGCTTAAGGCGGAG 1636
Query 1678 Taaatacaaaagtaaagagattagaggaaaacaaaattg-aaggaaggaagaaagaaaaa 1736
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct 1637 TAAATACAAAAGTAAAGAGATTAGAG-AAAA-AAAATTGGAAGGAAGGAAGAAAGAAAAA 1694
Query 1737 cttccggaaattgaaatttataaggaagCTTCTGATGATGTAATGATTGGGTCTTTTTT- 1795
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1695 CTTCCAAAAATTGAAATTTATAAAGAAGCTTCTGATGATGTAATGATTGGGTCTTTTTTT 1754
Query 1796 ------GTAAGTT-ATATTCTGTACCATTTTCTGGGTGGGGGTTGTATCGACAAAATCTG 1848
||||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1755 TTTTTTGTAAGTTTATATTCTGTACCATTTTCTGGGTGCGG-TTGTATCGACAAAATCTG 1813
Query 1849 TAGCGTAGTTTTA-TTTTATTTTTGATTTAATGATACATTGTCAC 1892
||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1814 TAGCGTAGTTTTACTTTTATTTTT-ATTTAATGATACATTGTCAC 1857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5