BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08230.1
Length=5082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487657 jgi|Araly1|487657|fgenesh2_kg.6__791__AT5G08230.1 4207 0.0
Ahg946628 jgi|Araly1|946628|scaffold_702857.1 167 8e-40
> Ahg487657 jgi|Araly1|487657|fgenesh2_kg.6__791__AT5G08230.1
Length=4402
Score = 4207 bits (2278), Expect = 0.0
Identities = 2716/2919 (93%), Gaps = 63/2919 (2%)
Strand=Plus/Plus
Query 900 TAACATTGCCAGTTCTaaaaagccaaaagaattgctg-aa-ag--a-----gaagaaaaa 950
||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct 834 TAACATTGCCAGTTCTAAAAAGCCAAAAGAATTGCTGAAAGAGAAACCTGTGAAGAAAAA 893
Query 951 gaggtttgaaaatgaactaggaaagTCTGCATCAGGAGCAGATGAAAGTAAACGTGCTGC 1010
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GAGATTTGAAAGTGAACTAGGAAAGTCTGCATCAGGAGCAGATGAAAGTAAACGTGCTGC 953
Query 1011 TAAGAGGCCACGGTCTGAAGATGCGAAGGATCAAAAACAATGTAAGAGCAAACGTCTTGT 1070
|||||||||||| |||||||||||||| |||||||| |||||| ||||||| |||||| |
Sbjct 954 TAAGAGGCCACGTTCTGAAGATGCGAAAGATCAAAAGCAATGTGAGAGCAACCGTCTTCT 1013
Query 1071 TCCTGTTGGTGAAGGCAAGGCTGAAATATCTGATTCTACTGGCGTTGTATCAATTTTTAA 1130
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 1014 TCCTGTTGGTGAAGGCAAGGCTGAAGGATCTGATTCTACTGGCGTTGTATCAATTCTAAA 1073
Query 1131 GCGTGAGATTGTGTTAGGGATAAGTGCCCTGGGAGGAAAAAATCAATTTGATAAGGACAT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GCGTGAGATTGTGTTAGGGATAAGTGCCCTGGGAGGAAAAAATCAATTTGATAAGGACAT 1133
Query 1191 GGTCGCTTATACAAAGCGCCGGAAACAGACAGTGGAGCACACAAGTGTTTCCTCTTTTCC 1250
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1134 GGTCGCTTATACAAAGCGCAGGAAACAGACAGTGGAGCACACAAGTGTTTCCTCTTTTTC 1193
Query 1251 TGGGTCTCTCGTTAAAGAGGGGGCAAATCACCCTGAACAGAAGATAAGTTCATCTTCTGA 1310
||||||||||||||||||| || ||||||| || |||||||||| ||||||||||||||
Sbjct 1194 TGGGTCTCTCGTTAAAGAGAGGACAAATCA-CC--AACAGAAGATGAGTTCATCTTCTGA 1250
Query 1311 TAGCGATATCAAGGTTCAAGCTGCTCAGCTGCCGAAGAGACGGAGGGCGGTTTGTATCTA 1370
||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1251 TAGCGATGTGAAGGTTCAAGCTGCTCAGCTGCCGAAGAGACGGAGGGCGGTATGTATCTA 1310
Query 1371 TGACGACGATGATGATGATGAAGACCCAAAGACTCCAGTGCATGGAGGACTTAGCAATAT 1430
|||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1311 TGACGATGATGATGATGATGAAGACCCAAAGACTCCAGTGCATGGAGGACATACCGATAT 1370
Query 1431 T-CC----C--A--TAGCTTCTACTGATGCTCCTAAAAGTGCTAATGCGTCCCATAATAC 1481
| || | | ||||| |||||| || |||||||||| ||||||| |||||||||||
Sbjct 1371 TCCCAAAGCTAATTTAGCTACTACTGTTGGTCCTAAAAGTACTAATGCATCCCATAATAC 1430
Query 1482 TTCTATTAAAGCAAAACTATTAGCTGGATCTACAGACAGTGTGAAAACAGGGAAAGTACC 1541
||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 1431 TTCTATTAAAGCAAAGCTATTAGCTGGATCTGCAGAAAGTGCGAAAACAGGGAAAGTACC 1490
Query 1542 TCTGTATAAACATAACAAGGATGCTTCACTTGCACTACCTGATAGCGTGGAAGGATATAA 1601
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1491 TCTGTATAAACATAACAAGGATGCTTCACTTGCACTACCTGATAGGGTGGAAGGGTATAA 1550
Query 1602 CTCACGTATGGGAAAACCTTTCAAGGCGTTGCTCCAAAAGAACATCAAGCCGATCTTAAG 1661
||||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||
Sbjct 1551 CTCACCTATGGGAAAACCTGTCAAGGCGTTGCTCCCAAAGAATATCAAGCCGATCTTGAG 1610
Query 1662 ATCTCCTAAGAATTCTTATCAGCTGGTTTCATTTAAGAAACAGGTGACAGGACAAAATAA 1721
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 ATCTCCTAAGAATTCCTATCAGCTGGTTTCATTTAAGAAACAGGTGACAGGACAAAATAA 1670
Query 1722 AACTGCAAAAGTCGCTGGTGCAGGAATGCCAGATAGTGTGGAGGGCCCTTCAAACAGCTC 1781
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1671 AACTGCAAAAGTCTCTGGTGCAGGAATGCCAGATAGCGTGGAGGGCCCTTCAAACAGCCC 1730
Query 1782 CTATATGGGTAAACCAGTCATCAAATTGCCCCCACAGAATGTCAAGCAGACCTTGAGATC 1841
|| |||||| |||||||||||||| || || ||||||||||||||||||| |||||||||
Sbjct 1731 CTCTATGGGAAAACCAGTCATCAAGTTACCTCCACAGAATGTCAAGCAGATCTTGAGATC 1790
Query 1842 TCCTAAGAAGTCCCCTCAGTTGTTTTCAACCAAGGAGCTGGTGGCAGTACAGAATAAAAT 1901
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1791 TCCTAAGAAGTCCCCTCAGTTGTTTTCAACTAAGGAGCTGGTGGCAGGACAGAATAAAAT 1850
Query 1902 TGCAAAAGTCTCTGGTGCGGGCATACCaaaaaaaTATCATGGTGATTCTTCCAAGGACGT 1961
||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 1851 TGCAAAAGTCTCTGGTGCGGGGATGCCAAAAAAATATCAAGGTGATTCTTCCAAGGACGC 1910
Query 1962 AGTGGCTGGTTCTGATAGAGTAAGCTCTTCTCATTCTCAGACAGCAAACCAGAGAAGCAA 2021
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1911 AGTGGCTGGTTCTGATAGAGTAAGCTCTTCTCATTCTCAGACAGCAAATCAGAGAAGCAA 1970
Query 2022 ACCAGCTTTTGGAGAAAAGCCAACTA-GCACTCCGAAAGTTGCAA----C--TCGTCT-G 2073
|||||||||||| ||||||||||| | |||||||||||||||||| | |||||| |
Sbjct 1971 ACCAGCTTTTGGGGAAAAGCCAAC-AGGCACTCCGAAAGTTGCAACTCGCAGTCGTCTGG 2029
Query 2074 --GATGTTGAAGTGTCAAGGGACACTTTTGTGAACTTGTCTGCTGACGTGATTGATGTCA 2131
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2030 ACGATGTTGAAGTGTCAAGGGACACTTCTGTGAACTTGTCTGCTGACGTGATTGATGTCA 2089
Query 2132 ATCAAGAAAATGGAAATGCCCCATTGTTCAGTTTTGGGATGTCAGATTCTTCTTCTTCAT 2191
||||||||||||||| |||||||||| |||||||||||||| | || |||||| ||||
Sbjct 2090 ATCAAGAAAATGGAAGTGCCCCATTGATCAGTTTTGGGATG-C-GA-GATTCTTCATCAT 2146
Query 2192 GTATGAAGGATCTAATTGCAGCTGCCCAGGCAAAAAGAAAACAAGCACATTCACAGT-TT 2250
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 2147 CTATGAAGGATCTAATTGCAGCTGCCCAAGCAAAAAGAAAACAAGCACATTCACA-TACT 2205
Query 2251 TCACCGTTTGTGAATCTAGACCATAATTCCCTTAACATCGATTCGATGCAGACGAGTAAA 2310
|||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||
Sbjct 2206 TCACCGTTTGTGAATCTAGACCATAATTCCCTTACCATCGATTCAATGCAGTCGAGCCAA 2265
Query 2311 AGCCCTTTCATGGTTCAGAATGTTTCATCTCCTGCTGCCGATGCCACGCTGATTGTTGCT 2370
||||||||||||||||| |||||||||||| || ||| |||||||| |||||||||||||
Sbjct 2266 AGCCCTTTCATGGTTCAAAATGTTTCATCTTCTACTGGCGATGCCATGCTGATTGTTGCT 2325
Query 2371 CAGGAACATCAAGAAGTTTTGACTCCGTCAAATCATGGCCGCCAGTCCTCATCAAGTAAC 2430
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |
Sbjct 2326 CAGGAACATCAAGAAGATTCGACTCTGTCAAATCATGGCCGCCAGTCCTCATCAAGTAGC 2385
Query 2431 CAAGCTGGGACTGAAGAGAACGAAGAGAGAAGGTTTAGTTCAGGGCATAGGTCAGTTGGG 2490
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2386 CAAGCTGGGACTGAAGAGAATGAAGAGAGAAGGTTTAGTTCAGGGCATAGGTCAGGTGGT 2445
Query 2491 GGTTCACTGAGTGGTGCCACTGAGGCTGCGATTTCTCGAGATACTTTTGAGGGAATGATA 2550
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2446 GGTTCACTGAGTGGTGCCACTGAGGCTGCGATAACTCGAGATACTTTTGAGGGAATGATA 2505
Query 2551 GAGACTTTATCCAGAACTAAGGAAAGTATTAGACGTGCAACACGCGTTGCAATTGATTGT 2610
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2506 GAGACTTTATCCAGAACTAAGGAAAGTATTAGACGTGCAACACGCCTGGCAATTGATTGT 2565
Query 2611 GCCAAGTATGGGATTGCCAATGAGGTTGTGGAACTTCTAATTCGAAAGTTGGAAATTGAG 2670
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 2566 GCCAAGTATGGGATTGCCAGTGAGGTTGTGGAACTTCTCATTCGAAAGTTGGAAATTGAG 2625
Query 2671 CCTCATTTTCCCCGTAAAGTGGACTTGTTCTTTCTCCTTGATTCGATTATCCAGAGTTCA 2730
|||||||||||||| ||||||||| |||||||||| ||||||||||| |||||| ||||
Sbjct 2626 CCTCATTTTCCCCGAAAAGTGGACCTGTTCTTTCTTCTTGATTCGATCATCCAGTGTTCC 2685
Query 2731 CATAGCCAAAAAGGTAGAG-CGCGCTCTTTGTATATTCCTACTGTTCAGGCAGCCCTTCC 2789
||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 2686 CATAGCCAAAAAGGTAGAGCCG-GCTCTTCATATATTCCTACTGTTCAGGCAGCCCTTCC 2744
Query 2790 ACGCCTTCTAGGTGCTGCTGCTCCTCCAGGGACTGGTGCTCGTGAAAATCGTCATCAATG 2849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2745 GCGCCTTCTAGGTGCTGCTGCTCCTCCAGGGACTGGTGCTCGTGAAAATCGTCATCAATG 2804
Query 2850 TCGCAAGGTGTTGAGGTTGTGGCTTAAGAGGAAAATTTTCCCAGATTTTCTTTTGCGTCG 2909
||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 2805 TCGCAAGGTGTTGAGGTTGTGGCTTAAAAGGAAGATTTTCCCAGATTCTCTTTTGCGTCG 2864
Query 2910 TTATATTGGTGATCTTGGTGCTTCTGGTGATGATAAAACCGTTGGGTTTTCCCTACGACG 2969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2865 TTATATTGGTGATCTTGGTGCTTCTGGTGATGATAAAACCGTTGGGTTTTCCCTACGACG 2924
Query 2970 TCCTTCTAGATCTGAGCGTGCTGTAGATGATCCTCTAAGGGACATGGAAGGGATGCTTGT 3029
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2925 TCCTTCTAGATCTGAGCGTGCTGTAGATGATCCTCTACGGGACATGGAAGGGATGCTTGT 2984
Query 3030 TGACGAGTATGGGAGCAATGCAAATTTTCAGCTGCCAGGGTATTTAGCTTCTCTTACTTT 3089
|||||||||||||||||||||| |||||||||||| ||||||||| |||||| |||||
Sbjct 2985 CGACGAGTATGGGAGCAATGCAAGTTTTCAGCTGCCGGGGTATTTATCTTCTCACACTTT 3044
Query 3090 TGGAGATGATGAAGAAGA-G-G-ATCTTCCAAGCACATCACAGGAAGTTAAAAACACACA 3146
|||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct 3045 TGGAGATGATGAAGAAGATGAGGATCTTCCAAGCACATCACAGGAAGTTAAACACACACA 3104
Query 3147 TATGGAAGTTAAAATCACACACATGGAAGAGCCAGTCCTTGCTTTAGGCAAGTTAGAGGC 3206
|||||||| | | ||||||| |||||||||||||||||||||
Sbjct 3105 TATGGAAG--A-------------G------CCAGTCCATGCTTTAGGCAAGTTAGAGGC 3143
Query 3207 ACATGATAGTTCAAGTGATAAACCTCACTGTGTAGTGGATGTTAATGGTGGGCTTGAAAT 3266
|||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |
Sbjct 3144 TCATGGTAGTTCGAGTGATAAATCTCACTGTGTAGTGGATGTCAATGGTGGGCTTGAATT 3203
Query 3267 GGAAGATGCGTCTTGTCAGCTGAAAGATGATGTCTGTGGGATTGAAGCGAAAGAGGACTC 3326
| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct 3204 GAAAGATGCGTCTTGTCAGCTTAAAGATGATGTCCGTGGGATTGAAGCGAAGGAGGACTC 3263
Query 3327 ACCGGCTACAACCTGTGCAACTGAGCTTCCTTCTTTTCCAGCGGGTTCTCCTCCTCTACC 3386
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3264 ACCGGCTGCAACCTGTGCAACTGAGCTTCCTTCTTTTTCAGCGGGTTCTCCTCCTCTACC 3323
Query 3387 TCACGAATCGCCTCCATCTccccctcctcaacccccttcttcccccccacccccATCATC 3446
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 3324 TCACGAATCGCCTCCATCTCCCCCTCCTCTACCTCCTTCTTCCCCCCCACCCCCATCATC 3383
Query 3447 TCCACCGCAACTGGCACCAGCACCACCTCCCTCTGATCATTGTTTACCTCCACCAACAGC 3506
||||||||| ||| |||||| ||||||||||| || |||||||||||||||||| ||||
Sbjct 3384 TCCACCGCAGCTGCCACCAGTGCCACCTCCCTCCGAGCATTGTTTACCTCCACCAGCAGC 3443
Query 3507 TCCATTGGCACCTGCACAATCTATCGCTCTACCACCATCATCAATAACTCGACCGTCCAT 3566
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3444 TCCATTGGCACCTGCACAATCTATAGCTCTACCACCATCATCAATAACTCGACCGTCCAT 3503
Query 3567 GCCTAGCCATCCTTCATTACCACTTCAACCAGGATTCGCTCCCCCAGCATATCCACTATT 3626
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3504 GCCTAGCCATCCTTCATTACCACTTCAACCAGGATTCGCTCCCCCAGCATATCCATTATT 3563
Query 3627 GCAACATGAATACCAGATATCTATGCAGCGGGATCATTCTAGCATTGCCACTAGTAATCA 3686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3564 GCAACATGAATACCAGATATCTATGCAGCGGGATCATTCTAGCATTGCCACTAGTAATCA 3623
Query 3687 AATTGCCCCAGTGCCCGTAAACGCTGCACATGGAAGGCATGCTGATGGGGGTGTAAAATC 3746
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3624 AATTGTCCAAGTGCCCGTAAACGGTGCACATGGAAGGCATGCTGATGGGGGTGTAAAATC 3683
Query 3747 TGAATATTTAATGCCGCAGTCATCTTCTTTTGCTCCGGT 3785
|||||||||| | ||||||||||||| ||||||||||||
Sbjct 3684 TGAATATTTATTACCGCAGTCATCTTGTTTTGCTCCGGT 3722
Score = 1186 bits (642), Expect = 0.0
Identities = 780/845 (92%), Gaps = 15/845 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGGGCGTAAAAGAGGAGCGAACAAAGCTATGGCGATAGGAGAGATGAGATTG 60
||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||
Sbjct 1 ATGGCTCCTGGGCGTAAAAGAGGAGCGAACAAAGCCATGGCCATAGGAGCGCTGAGATTG 60
Query 61 GGTGATCTCGTTCTTGCTAAAGTTAAAGGATTCCCTGCTTGGCCTGCTAAGATCGGCCAG 120
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGTGATCTCGTTCTTGCTAAAGTCAAAGGCTTCCCTGCTTGGCCTGCTAAGATCGGCCAG 120
Query 121 CCTGAAGATTGGAATCAAGCACCAGACCCAAAGAAACACTTCGTTCAGTTTTACGGAACA 180
|||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||
Sbjct 121 CCTGAAGATTGGAATCAAGCTCCAGACCCAAAGAAACACTTTGTTCAGTTTTTCGGAACA 180
Query 181 GGGGAAATAGGTTTTGTTACGCCTCCTGATATTCAACCCTTCACTAGCGAGACAAAGAAG 240
|||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||
Sbjct 181 CAGGAAATAGGTTTTGTTGCGCCACCTGATATTCAACCCTTCACTAGCGAGGCAAAGAAT 240
Query 241 AAACTGTCGGCAAGATGTCAAGGTAAAACAGTCAAGTACTTTTCCCAAGCCGTGGAGGAA 300
||||| | |||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 241 AAACTATTAGCAAGATGTCAAGGTAAAACAGCCAAGTACTTTTCACAAGCCGTGGAGGAA 300
Query 301 ATCTCTGCTGCGTTTGAAGAGTCGCAGAAGCAAAAGTCAGATATAGTAGGCAATGAGGCT 360
||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 301 ATCTCTGCTGCATTTGAAGAGTCGCAGAATCACAAGTCAGATATAGTAGGTAATGAGGCT 360
Query 361 CTTTTGAATGCTGTTGAACCTAGTGTGACGAAGCCTAAG-TATTTGAATCAAGCTAGTAG 419
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 361 CTTTTGAATGCTGTTGAACCTAGTGTGACGAAGCCTAAGATATT-GAATCAAGCTAGTAG 419
Query 420 TGATGGAAAATCTGATAAGTTT-AGTTCTAGGGCGGATCCTTGTCTTGGTAAATTAGTTG 478
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 420 TGATGGAAAATCTGATAAGTTTGACT-CTAGGGCGGATCCTTGTCTTGGTAAATTAGTTG 478
Query 479 AGAATAATGGTGCAGAGATAAATCCTGATGTAGGAGAGCAAGATTC-ATCGATATCAAAT 537
|||||||||||||||||| ||| |||||| ||||||| || || || ||||| |||||||
Sbjct 479 AGAATAATGGTGCAGAGAAAAAGCCTGATATAGGAGATCA-GAATCTATCGAAATCAAAT 537
Query 538 AACAGAAACACATCCCCAAGTAGTGAGCCAGTGGAGCATGGATCACCTGACCCTATTTTA 597
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 538 AACAGAACCACATCCCCAAGTAGTGAGCCATTGGAGCATGGATCACCTGACCCTATTTTA 597
Query 598 AAGGTAGCAGTTGATGATAAGATTGACAATGTCACTTGCACTGACCATAGTGATGGTACT 657
| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 598 ATGGTAGCAGTTGTTGATAAAATTGACGGTGTCACTTGCACTGACCATAGTGATGGTACT 657
Query 658 GGAAATAATTTAGTCAATGATCAGAGGATAATCAGGAAGACAACAGATGACTCGAATAAA 717
||||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 658 GGAAAGAATTCGGTCAATGATCAGAGGATAATCAGGAAGATAACAGGTGACTCGAATAAA 717
Query 718 AGATGTAAAGATGAGGTTAGAGCCAAACGTGTGCCTGATAGTCGAGCTGCTACAGACAAT 777
|||| | | | ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 718 -GATG-A--G-T----TTAGAGCCAAAAGTGTACCTGATAGTCGAGCTGCTACAGACAAT 768
Query 778 CATATCCTTGGTCCTAATCAGAAATTAAAGGGCAGTATAAAGGGACAAGATCATGGCAGT 837
||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 769 CATCTCCTTGGTCCTAATCAGAAATTAAAGGGCAGTAAAAAGGGACAAGATCATAGTAGT 828
Query 838 AAAAA 842
| |||
Sbjct 829 AGAAA 833
Score = 1085 bits (587), Expect = 0.0
Identities = 652/683 (95%), Gaps = 6/683 (1%)
Strand=Plus/Plus
Query 3856 GTGCTTTTTAAACAAGAAGCGTCTTCACAGAACCAACAGCTTCGGCCAATCAATACCTCT 3915
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3721 GTGCTTTTTAAACATGAAGCGTCTTCACAGAACCAACAGCTTCGGCCAATCAATACCTCT 3780
Query 3916 TTTCTTCAGAGACCTATGATTAGGAATCTTGCCCCAGCACCATCCAGCCATTTTCCGCTT 3975
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3781 TTTCTTCAGAGACCTATGATTAGGAATCTCGCCCCAGCACCATCCAGCCATTTTCCGCTT 3840
Query 3976 CCATGTCGAATTGTTCAATCTGAACCCCAGCGGTCCTCCTTTCCACATCCTTACCATTTT 4035
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 3841 CCATGTCGGATTGTTCAATCAGAACCCCAGCGGTCCTCCTTTCCACATCCTTACCCTTTT 3900
Query 4036 CCTTCCCAGCCAGTTGATGGGCGACAACATATGAATGAGG-A--ATGGCGGATGCCTCCA 4092
||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||
Sbjct 3901 CCTTCCCAGCCAGTTGATGGGCGACGACATATGAATGAGGAAGCATGGCGGATGCCTTCA 3960
Query 4093 AATGGATGTAGTGCAGATCCTCAATATGGAGCCTGGATAGGTGTAAGAAACCCATTTCCA 4152
|||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 3961 AATGGATGTAATGCAGATACTCAATATGGAGCCTGGATAAGTGGAAGAAACCCATTTCCA 4020
Query 4153 GGCTCTCGTACAGTTACCGACGGTGTCTTTCAGCCACCTCCAGAAAGACCACCTTCGGGG 4212
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 4021 GGCTCTCTTACAGTTACCGACGGTTTCTTTCAGCCACCTCCAGAAAGACCACCTTCGGGG 4080
Query 4213 AC-AGTGAGGTATCAGCTTGCTGCTAATAACTTACAAGGTGGCTCTACGATTTCAGGTAA 4271
|| | |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 4081 ACTA-TGAGCTATCAGCTTGCTGCTAATAACTTCCAAGGTGGCCCTACGATTTCAGGTAA 4139
Query 4272 TATTGCTTCGCAGATGCTTCTGTCTCGACCAGATGTACCTTCCGCGGCTCAGTACAGGCC 4331
|||||||||||||||||||| |||||| ||||| |||||||||||||||| || |||||
Sbjct 4140 TATTGCTTCGCAGATGCTTCCGTCTCGGCCAGACGTACCTTCCGCGGCTCGGTGGAGGCC 4199
Query 4332 ATCCTGAAGTTAAGTTCGAAATCGAGAACCTGCATTCTCTTCCATGAAGGAC-TTTTTGG 4390
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 4200 ATCCTGAAGTTAAGTTCGAAATAGAGAACCTGCATTCTCTTCCATGAAGGACATTTTTGG 4259
Query 4391 CGGTATATTCACATCCAGAGGCATCAAAAGTTCAAAACTCTGCAGACTATTGTCAGGATA 4450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4260 CGGTATATTCACATCCAGAGGCATCAAAAGTTCAAAACTCTGCAGACTATTGTCAGGATA 4319
Query 4451 TTGCTATATATTGTAATTGTTCCTGACGAATGTATCACCGGATCATGTTCTTCACAGTAT 4510
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4320 TTGCTATATATTGTAATTGTTCCTGACGAATGTATCACCGGATCATATTCTTCACAGTAT 4379
Query 4511 ATGCCCTAGGTTCTAATTTGGTT 4533
||||||||| |||||||||||||
Sbjct 4380 ATGCCCTAGTTTCTAATTTGGTT 4402
> Ahg946628 jgi|Araly1|946628|scaffold_702857.1
Length=329
Score = 167 bits (90), Expect = 8e-40
Identities = 104/111 (94%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGGGCGTAAAAGAGGAGCGAACAAAGCTATGGCGATAGGAGAGATGAGATTG 60
||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||| ||||
Sbjct 72 ATGGCTCTTGGGCGTAAAAGAGGAATGAACAAAGCCATGGCGATAGGAGAGCTGATATTG 131
Query 61 GGTGATCTCGTTCTTGCTAAAGTTAAAGGATTCCCTGCTTGGCCTGCTAAG 111
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 132 GGTGATCTCGTTCTTGCTAAAGTTAAAGGCTTCCCTGCTTGGCCTGCTAAG 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 192381031515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5