BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08240.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892751 jgi|Araly1|892751|Al_scaffold_0006_747 1026 0.0
> Ahg892751 jgi|Araly1|892751|Al_scaffold_0006_747
Length=759
Score = 1026 bits (555), Expect = 0.0
Identities = 708/779 (91%), Gaps = 22/779 (3%)
Strand=Plus/Plus
Query 63 ATGGCGAAAACAGAGAAGAGAGTCCGAGAAGGACTCGGATCTTCTTCGTATTTCCTCGGC 122
|||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAAAACAGAGAAGCGAGTCCCAGAAAGACTCGGATCTTCTTCGTATTTCCTCGGC 60
Query 123 TGTTTCGGATTCTCCCGGAAAATATACTCCGACAAGCCGATGGTTACGAAGGGAGACGGT 182
||||||||||| |||| |||| ||||||||||||||||||||||||| || | |||||||
Sbjct 61 TGTTTCGGATTTTCCCCGAAAGTATACTCCGACAAGCCGATGGTTACAAAAGAAGACGGT 120
Query 183 GGTGagaagaagaagatgaagaagaagCGAATCCCTCGGTGGTTTTTGTGTTCCAAGTTC 242
| | | | ||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 121 --T--------GTA-A-GAAGAAGAAGCGAATTAGTCGGTGGTTTTTATGTTCGAAGTTC 168
Query 243 CGCCTGAAGAACAGCGAGATCAAACCGTCGCCGATCGAGGAAACAGAGAAACCTACTTCG 302
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 169 CGCCTGAAGAACGGCGAGATCAAACCGTCGCCGATCGAGGAAACAGAGAAACCTACTTGG 228
Query 303 AGAGTAGAAGATGAAACTGATGATAAGCAGAAACCCCTCTCCGTGATACGTCGTATAACT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 AGAGTAGAAGATGAAACTGATGATAAGCAGAAACCCCTCTCCGTGATACGTCGTATAACT 288
Query 363 GATCGTAAAAATATTCCGGTTGATGATAAAGCCATGAATCAGGAAACAAAAGAGACAAAA 422
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GATCGTAAAAGTATTCCAGTTGATGATAAAGCCATGAATCAGGAAACAAAAGAGACAAAA 348
Query 423 CCAAAGGACTTACGAGACATA-ACCCCTGACCGATCAAAACCCATCGAACCGTTAGGTTC 481
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 349 CCTAAGGACTTACGAGAC-TCCACCCCTGACCGATCAAAACCCATCGAACCGTTAGGTTC 407
Query 482 CTTCAAAGAAGACACGTGTACAGAGCGGATATCTTCTATTTCATCCCGTTACGGGAAACC 541
||||||| ||||||||||| |||||||||||||| ||| || |||||||| |||| |
Sbjct 408 CTTCAAAAAAGACACGTGTCCAGAGCGGATATCTA--ATTCCA-CCCGTTACTTGAAATC 464
Query 542 CGACTTGAAACCAACTCGGTCGAGAAACGGGTCAAGGGTCAAACCTTTTGACCCGGTAAT 601
||||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||
Sbjct 465 AGACTTGAAACCAACTCGATCAAGAAATGGGTCACGGGTCAAGCCTTTTGACCCGGTAAT 524
Query 602 TGGGATATCGATCATTATATTGACGTTGATGATTATGTTAGTGTGGGGTCGACTCTGTGC 661
|||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 525 TGGGATTTCGATAATTATATTGACGTTGATGATTATGTTAGTTTGGGGTCGAGTTTGTGC 584
Query 662 GATCCTCTGTACATCCGCTTGGTGTTACGTCCTACCTCGTGTCAGAGACGCAGCCGCGTT 721
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 585 TATTCTGTGTACATCCGCTTGGTGTTACGTCCTACCTCGTGTCAGAGACGCGGCCGCGTT 644
Query 722 GGCCAAACGCAAACGCAACGGTTCTGCTTCTGT-GCCGGATTTGAATTCGGAGTCGTATA 780
|||||||||||||||||||||| || ||| | |||||||||||| ||||| ||||
Sbjct 645 GGCCAAACGCAAACGCAACGGTA--GCGA-TGTAGG-GGATTTGAATTCAGAGTCTTATA 700
Query 781 AAAGAAAAGTCGTTTTGGACGGGTTTCTTGGACGGCAAAATCGCGTTTCGTTGTCATGA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AAAGAAAAGTCGTTTTGGACGGGTTTCTTGGACGGCAAAATCGCGTTTCGTTGTCATGA 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5