BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08250.1 Length=1791 Score E Sequences producing significant alignments: (Bits) Value Ahg892752 jgi|Araly1|892752|Al_scaffold_0006_748 2525 0.0 Ahg941840 jgi|Araly1|941840|scaffold_602384.1 1190 0.0 > Ahg892752 jgi|Araly1|892752|Al_scaffold_0006_748 Length=1659 Score = 2525 bits (1367), Expect = 0.0 Identities = 1525/1604 (95%), Gaps = 0/1604 (0%) Strand=Plus/Plus Query 1 CTTCTTGTTTCGGAAGCGACGAACTTCTGGTTTCAAGGAGGCTGTTTTCCCTGAGAGATG 60 |||||||||||||||||||||| | ||||||| | ||||||||||||| | ||||||||| Sbjct 56 CTTCTTGTTTCGGAAGCGACGAGCCTCTGGTTCCTAGGAGGCTGTTTTTCTTGAGAGATG 115 Query 61 TTCAGATTCTTGAGCTCTTTATTGCCTTTTTCGTGTTTGCGACAATACATTCCTTGCGCC 120 |||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| Sbjct 116 TTCAGATTCTTGAGCTCTTTATTGCCCTTTTAGTGTTTGTGACAATACATTCCTTGCGCC 175 Query 121 AGAAGAAACACCAAGGGATGCCCGTTTGGCCGTTGGTTGGCATGCTTCCTTCGTTGATAT 180 |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| | Sbjct 176 AGAAGAAACATCAAGGGATGCCCGTTTGGCCGTTTCTTGGCATGCTTCCCTCGTTGATTT 235 Query 181 CCGCGGTACGAAGCAACATATACGAATGGCTGTCTGATGTTCTTATCAGCCAAAACGGGA 240 ||||| | ||||||||||||||||||||| | ||||| ||||| |||||||||||||||| Sbjct 236 CCGCGTTCCGAAGCAACATATACGAATGGTTATCTGAGGTTCTCATCAGCCAAAACGGGA 295 Query 241 CATTCCGGTTTAGAGGTCCTTGGTTTAGCACCCTCAACTGCGTTGTTACCTGCGACCCAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 CATTCCGGTTTAGAGGTCCTTGGTTTAGCACCCTCAACTGCGTTGTTACCTGCGACCCAA 355 Query 301 GAAACGTTGAGCATCTTCTCAAGACCCGTTTCTCTATCTACCCAAAGGGTTCTTACTTCC 360 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 356 GAAACGTTGAGCATCTTCTCAAGACCCGTTTCTCTATCTATCCTAAGGGTTCTTACTTCC 415 Query 361 GTGAGACCATGCAAGATCTACTCGGAGACGGGATTTTCAACACCGATGACGGAACGTGGC 420 |||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 416 GTGAGACCATGCGAGATCTACTCGGAGACGGGATTTTCAATACCGATGAAGAAACGTGGC 475 Query 421 AACGACAAAGGAAAGCAGCAAGTGTCGAATTCCATTCGGCTAAATTCAGACAATTAACCA 480 ||| |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 476 AACAACAAAGGAAAACAGCAAGTGTCGAGTTCCATTCGGCTAAATTCAGACTGTTAACCA 535 Query 481 GTCAATCATTGCACGAACTCGTGCATAATCGACTTTTGCCGGTTCTAGAAACTTCCGGAA 540 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 536 GTCAATCATTGCACGAACTTGTGCATAATCGACTTTTGCCGGTTCTAGAAACTTCCGGCA 595 Query 541 AGATTGATCTTCAGGACATTTTGTTAAGACTAACGTTCGACAATGTATGCATGATTGCTT 600 | || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 ATATCGATCTTCAAGACATTTTGTTAAGACTAACGTTCGACAATGTATGCATGATTGCTT 655 Query 601 TCGGGGTCGATCCAGGCTGTCTTAGTCCAAAACTACCCGAAATTCCTTTTGCAAAAGCCT 660 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 TTGGGGTCGATCCAGGCTGTCTTAGTCCAAAACTACCCGAAATTCCTTTTGCAAAAGCCT 715 Query 661 TCGAGGACGCAACAGAAGCAACAGTTGTGAGATTTGTGATGCCTAAATTCGTGTGGAAGC 720 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 TCGAGGATGCAACAGAAGCAACAGTTGTGAGATTTGTGATGCCTAAATTCGTGTGGAAGC 775 Query 721 TCATGAGGTCTCTTAATTTAGGAACGGAGAAGAAGCTAAAGGAATCAATAAATGGTGTGG 780 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 776 TCATGAGGTCTCTTAATTTAGGAACGGAGAAGAAGCTAAAGAAATCAATAAAAGGTGTGG 835 Query 781 ATGATTTCGCTGAAGAAGTAATCCGGACGAGGAAGAAAGAGATGTCTCTAGAGACTGAAA 840 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 836 ATGATTTCGCTGAAGAAGTAATCCGGAGGAGGAAGAAAGAGATGTCTCTAGAGGCTGAAA 895 Query 841 TCGCGAAGAGACCTGATCTCTTGACTATTTTTATGGGTCTACGAGACGAAAATGGACAGA 900 || ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 896 TCTCGAAGAGACCTGATCTCTTGACTATCTTTATGGGTCTACGAGACCAAAATGGACAGA 955 Query 901 AATTTTCAGATAAGTTCTTGCGTGATATTTGTGTGAACTTCATACTTGCTGGGAGAGACA 960 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 956 AATTTTCAGATAAGTTTTTGCGCGATATTTGTGTGAACTTCATACTTGCTGGGAGAGACA 1015 Query 961 CTTCCTCTGTGGCTCTAAGCTGGTTTTTCTGGTTAATCGAGAAGAATCCGGAAGTGGAGG 1020 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 CTTCCTCCGTGGCTTTAAGCTGGTTTTTCTGGTTAATCGAGAAGAATCCGGAAGTGGAGG 1075 Query 1021 AGAAAATTATGATGGGAATTTGCAAGATTCTTGAGCAGAGGGTTGATCATGGAGATACAA 1080 ||||||| |||||||||||||||||||||||||||||||| | |||||| |||||| ||| Sbjct 1076 AGAAAATCATGATGGGAATTTGCAAGATTCTTGAGCAGAGAGATGATCAGGGAGATGCAA 1135 Query 1081 AGAAGAACATGGAATATGAGCCCGTCTTCAGACCAGAAGAGATCAAGAAAATGGATTATC 1140 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1136 AGAAGAACATGGAATATGAGCCTGTGTTCAGACCAGAAGAGATCAAGAAAATGGATTATC 1195 Query 1141 TACAAGCTGCTTTGTCTGAGACTCTTAGATTGTATCCCTCTGTTCCAGTCGATCACAAAG 1200 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1196 TACAAGCTGCTTTGTCTGAGACTCTCAGATTGTATCCTTCTGTTCCAGTCGATCACAAAG 1255 Query 1201 AGGTACTTGAAGACGATGTATTTCCAGATGGGACGAAATTaaaaaaaGGAGAAAAGGTTA 1260 ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| Sbjct 1256 AGGTACTTGAAGACGATATATTTCCAGATGGGACCAAATTAAAAAAAGGAGAAAAAGTTA 1315 Query 1261 TATATGCAATATACGCGATGGGACGTATGGAAACAATTTGGGGGAAAGACTGTCGTGAGT 1320 |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1316 TATACGCAATATACGCCATGGGACGCATGGAAACAATTTGGGGGAAAGACTGTCGTGAGT 1375 Query 1321 TCAAGCCAGAAAGGTGGTTAAGAGACGGCAGGTACATGAGTGAGTCGGCCTATAAGTTCA 1380 |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||| | Sbjct 1376 TCAAACCAGAAAGGTGGTTAAGAGATGGCCGATACATGAGTGAGTCGGCCTATAAGTTTA 1435 Query 1381 CGGCCTTCAATGGTGGTCCTCGGCTATGTCTAGGCAAGGATTTTGCGTATTACCAAATGA 1440 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1436 CGGCCTTCAATGGCGGTCCTCGGCTATGTCTAGGCAAGGATTTTGCGTATTATCAAATGA 1495 Query 1441 GATATGTAGCGGCCGCCATTATTTACCGGTATAAGGTTAGGGTTGATGATAAGGGTGGTC 1500 ||||||| |||||||| ||||| ||||| |||| ||| ||||||||||||||||| |||| Sbjct 1496 GATATGTTGCGGCCGCGATTATCTACCGATATAGGGTCAGGGTTGATGATAAGGGAGGTC 1555 Query 1501 ATAAGGTTGAGCCAAAGATGGCTCTAACTATGTACATGAAGCATGGCTTGAAGGTGAATA 1560 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1556 ATAAGGTTGAGCCAAAGATGGCTCTAACTATGTACATGAAGCATGGATTGAAGGTGAATA 1615 Query 1561 TGGTCAAGAGGAGTGTCTCTGAGATAGACCACTACTACTGCTGA 1604 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1616 TGGTCAAGAGGAGTGTCTCTGAGATAGACCACTACTACTGCTGA 1659 > Ahg941840 jgi|Araly1|941840|scaffold_602384.1 Length=1721 Score = 1190 bits (644), Expect = 0.0 Identities = 1303/1614 (81%), Gaps = 74/1614 (5%) Strand=Plus/Plus Query 26 TCTGGTTTCAAGGAGGCTGTTTTC-CCTGAGAGATGTTCAGATTCTTGAGCTCTTTATTG 84 |||||||||| |||||||| |||| | ||| |||||||||| ||||||||||| |||||| Sbjct 93 TCTGGTTTCATGGAGGCTG-TTTCTCTTGAAAGATGTTCAGGTTCTTGAGCTCCTTATTG 151 Query 85 -CCTTTTTCGTGTTTG-CGACAATACATTCCTTGCGCCAGAAGAAACACCAAGGGATGCC 142 ||||||| || |||| | || |||||||||||||| ||||||||| ||||||| | || Sbjct 152 CCCTTTTT-GTCTTTGTC-ACTATACATTCCTTGCGTCAGAAGAAATACCAAGGTCTTCC 209 Query 143 CGTTTGGCCGTTGGTTGGCATGCTTCCTTCGT-T-GATATCCGCGGTACGAAGCAACATA 200 || |||||||| | || ||||||||||| | | | | | || | ||| |||||||| Sbjct 210 TGTGTGGCCGTTTCTCGGGATGCTTCCTTC-TCTAGCTTTTGGC-CTCCGAGGCAACATA 267 Query 201 TACGAATGGCTGTCTGATGTTCT-TATCAGCCAAAACGGGACATTCCGGTTTAGAGGTCC 259 ||||| ||||| || |||||||| | || ||||||||| || |||| || |||||||| Sbjct 268 TACGAGTGGCTATCCGATGTTCTCTGTC-TCCAAAACGGTACTTTCCAATTCAGAGGTCC 326 Query 260 TTGGTTTAGCACCCTCAACTGCGTTGTTACCTGCGACCCAAGAAACGTTGAGCATCTTCT 319 |||||||||| ||||||| || | ||||||||||||||||||||||||||||||| || Sbjct 327 CTGGTTTAGCAGCCTCAACAGCACTATTACCTGCGACCCAAGAAACGTTGAGCATCTCCT 386 Query 320 CAAGACCCGTTTCTCTATCTACCC-AAAGGGTTCTTACTTCCGTGAGACCA--TGCAAGA 376 ||||| |||||||||| ||| ||| ||| ||||||||||||| ||||| | | | ||| Sbjct 387 CAAGAACCGTTTCTCTGTCTTCCCTAAA-GGTTCTTACTTCC--GAGACAATCTCCGAGA 443 Query 377 TCTACTCGGAGACGGGATTTTCAACACCGATGACGGAACGTGGCA-ACGACAAAGGAAAG 435 || || || ||||| || ||||| | ||||| | ||| ||||| | ||||||||||| Sbjct 444 CCTCCTAGGCGACGGAATATTCAATGCGGATGATGAAACATGGCAGA-GACAAAGGAAAA 502 Query 436 CAGCAAGTGTCGAATTCCATTCGGCTAAATTCAGACAATTAACCAGTCAATCATTGCACG 495 | || || |||| || || || || ||||||||||||||||||| |||||| ||| | Sbjct 503 CCGCGAGCATCGAGTTTCACTCAGCCAAATTCAGACAATTAACCACTCAATCTTTGTTTG 562 Query 496 AACTCGTGCATAATCGACTTTTGCCGGTTCTAGAAACTTCCGG--AA-A----G------ 542 | |||||||| || |||| || || ||||| || || | ||| || | | Sbjct 563 AGCTCGTGCACAAGAGACTCTTACCTGTTCTTGAGACAT-CGGTTAAGAGCTCGTCTCCT 621 Query 543 ATTGATCTTCAGGACATTTTGTTAAGACTAACGTTCGACAATGTATGCATGATTGCTTTC 602 || ||||| || ||| | ||||| || ||||| ||||| |||||||| ||||||||||| Sbjct 622 ATAGATCTACAAGACGTCTTGTTGAGGCTAACATTCGATAATGTATGTATGATTGCTTTT 681 Query 603 GGGGTCGATCCAGGCTGTCTTAGTCCAAAACTACCCGAAATTCCTTTTGCAAAAGCCTTC 662 || ||||||||||| |||||| |||| | | ||||| ||||| ||||| |||||||| Sbjct 682 GGAGTCGATCCAGGATGTCTTGGTCCTGATCAACCCGTGATTCCCTTTGCGAAAGCCTTT 741 Query 663 GAGGACGCAACAGAAGCAACAGTTGTGAGATTTGTGATGCCTAAATT-CGTGTGGAAGCT 721 ||||| || || |||||| | ||||||||||| || |||||| | || |||||||||| | Sbjct 742 GAGGATGCGACTGAAGCAGCGGTTGTGAGATTCGTCATGCCT-ACTTGCGTGTGGAAGTT 800 Query 722 CATGAGGTCTCTTAATTTAGGAACGGAGAAGAAGCTAAAGGAATCAATAAATGGTGTGGA 781 |||||||| ||||||||| ||||| |||||||||||||||||||| ||||| |||||||| Sbjct 801 CATGAGGTATCTTAATTTCGGAACAGAGAAGAAGCTAAAGGAATCTATAAAGGGTGTGGA 860 Query 782 TGATTTCGCTGAAGAAGTAATCCGGACGAGGAAGAAAGAGATGTCTCTAG-AGACTGAAA 840 ||||||||| |||||||| ||| ||||||||||||||||| | ||||| | || ||||| Sbjct 861 TGATTTCGCCGAAGAAGTTATCAGGACGAGGAAGAAAGAGCTCTCTCTTGAAG-GTGAAA 919 Query 841 TC-GCGAAGAGACCTGATCTCTTGACTATTTTTATGGGTCT-ACGAGACGA-AAATGGAC 897 | | |||||| | |||||||| ||| | ||||||||||| | |||| || ||| ||| Sbjct 920 -CTACAAAGAGATCGGATCTCTTAACTGTGTTTATGGGTCTGA-GAGATGAGAAA-GGAG 976 Query 898 AGAAATTTTCAGATAAG-TTCTTGCGTGATATTTGTGTGAACTTCATACTTGCTGGGAGA 956 ||| |||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||| Sbjct 977 AGAGTTTTTCAGACAAGTTTCTT-CGTGATATCTGTGTGAACTTCATACTTGCTGGGAGA 1035 Query 957 GACACTTCCTCTGTGGCTCTAAGCTGGTTTTTCTGGTTAATCGAGAAGAATCCGGAAGTG 1016 || ||||| || |||||||| ||||||||||||||||| | ||||||||||| || || Sbjct 1036 GATACTTCTTCGGTGGCTCTGAGCTGGTTTTTCTGGTTGCTAGAGAAGAATCCAGAGGTC 1095 Query 1017 GAGGAGAAAATTATGATGG-GAATTTGCAAGATTCTTGAG-CAGAGGGTTGATCATGGAG 1074 || ||||| || ||| ||| || | || |||||||| ||| ||||| | ||| |||||| Sbjct 1096 GAAGAGAAGATCATGGTGGAGA-TGTGTAAGATTCT-GAGGCAGAGAGATGACCATGGAA 1153 Query 1075 ATACAAAGAAGAACATGGAATATGAGCCCGTCTTCAGACCAGAAGAGATCAAGAAAATGG 1134 || || |||||| | | | ||||| || || || ||||||||||||| ||||| |||| Sbjct 1154 ATGCAGAGAAGAG-A-G-ATTATGAACCTGTGTTTGGACCAGAAGAGATTAAGAAGATGG 1210 Query 1135 ATTATCTACAAGCTGCTTTGTCTGA-GACTCTTAGATTGTATCCCTCTGTTCCAGTCGAT 1193 ||||||| ||||||||||||||||| | |||| ||||||||||| || ||||| || || Sbjct 1211 ATTATCTTCAAGCTGCTTTGTCTGAAG-CTCTCAGATTGTATCCTTCAGTTCCTGTGGAC 1269 Query 1194 CACAAAGAGGTACTTGAAGACGATGTATTTCCAGATGGGACGAA-ATTaaaaaaaGGAGA 1252 ||||||||||| | |||||||| |||||||| ||||| || || ||| || || ||||| Sbjct 1270 CACAAAGAGGTTCAAGAAGACGACGTATTTCCTGATGGAAC-AATATTGAAGAAGGGAGA 1328 Query 1253 -AAAGGTTATATATGCAATATACGCGATGGGACGTATGGAAACAATTTGGGGGAAAGACT 1311 |||| ||||||| | || ||||| ||||| || |||||| | |||||||| ||||||| Sbjct 1329 GAAAG-TTATATACGTGATTTACGCAATGGGTCGGATGGAAGCTATTTGGGGAAAAGACT 1387 Query 1312 GTCGTGAGTTCAAGCCAGAAAGGTGGTTAAGAGACGG-CAGGTACATGAGTGAGTCGGCC 1370 |||||||||| | |||||| |||||| |||||||||| | ||| |||||||||||||||| Sbjct 1388 GTCGTGAGTTTAGGCCAGAGAGGTGGCTAAGAGACGGAC-GGTTCATGAGTGAGTCGGCC 1446 Query 1371 TATAAGTTCACGGCCTTCAATGGTGGTCCTCGGCTATGTCTAGGCAAGGATTTTGCGTAT 1430 ||||| ||||||||||| || || ||||| || || ||||||||||| |||||||| ||| Sbjct 1447 TATAAATTCACGGCCTTTAACGGCGGTCCACGCCTTTGTCTAGGCAAAGATTTTGCCTAT 1506 Query 1431 TACCAAATGAGATATGTA-G-CGGCCGCCATTA-TTTACCGGTATAAGGTTAGGGTTGAT 1487 || || |||| | || || | ||||||| || | |||||||||| ||||| | ||| | | Sbjct 1507 TATCAGATGA-A-ATCTACGGCGGCCGCAAT-AGTTTACCGGTACAAGGTGAAGGTGG-T 1562 Query 1488 GATAAGGGTGGTCATAAGGTTGAGCCAAAGATGGCTCTAACTATGTACATGAAGCATGGC 1547 || | |||||| ||||| ||||| ||| |||| || || ||||||||||| ||||| Sbjct 1563 GA-A----TGGTCACAAGGTGGAGCCGAAGTTGGCACTCACAATGTACATGAAACATGGT 1617 Query 1548 TTGAAGGTGAATATGGTCAAGAGGAGTGTCTCTGAGATAGACCACTACTACTGC 1601 |||| ||||||| || |||| ||||||||||| |||||||| || ||||| ||| Sbjct 1618 TTGATGGTGAATTTGATCAATAGGAGTGTCTCCGAGATAGATCAATACTA-TGC 1670 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67229282425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5