BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08250.1
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892752 jgi|Araly1|892752|Al_scaffold_0006_748 2525 0.0
Ahg941840 jgi|Araly1|941840|scaffold_602384.1 1190 0.0
> Ahg892752 jgi|Araly1|892752|Al_scaffold_0006_748
Length=1659
Score = 2525 bits (1367), Expect = 0.0
Identities = 1525/1604 (95%), Gaps = 0/1604 (0%)
Strand=Plus/Plus
Query 1 CTTCTTGTTTCGGAAGCGACGAACTTCTGGTTTCAAGGAGGCTGTTTTCCCTGAGAGATG 60
|||||||||||||||||||||| | ||||||| | ||||||||||||| | |||||||||
Sbjct 56 CTTCTTGTTTCGGAAGCGACGAGCCTCTGGTTCCTAGGAGGCTGTTTTTCTTGAGAGATG 115
Query 61 TTCAGATTCTTGAGCTCTTTATTGCCTTTTTCGTGTTTGCGACAATACATTCCTTGCGCC 120
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct 116 TTCAGATTCTTGAGCTCTTTATTGCCCTTTTAGTGTTTGTGACAATACATTCCTTGCGCC 175
Query 121 AGAAGAAACACCAAGGGATGCCCGTTTGGCCGTTGGTTGGCATGCTTCCTTCGTTGATAT 180
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 176 AGAAGAAACATCAAGGGATGCCCGTTTGGCCGTTTCTTGGCATGCTTCCCTCGTTGATTT 235
Query 181 CCGCGGTACGAAGCAACATATACGAATGGCTGTCTGATGTTCTTATCAGCCAAAACGGGA 240
||||| | ||||||||||||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 236 CCGCGTTCCGAAGCAACATATACGAATGGTTATCTGAGGTTCTCATCAGCCAAAACGGGA 295
Query 241 CATTCCGGTTTAGAGGTCCTTGGTTTAGCACCCTCAACTGCGTTGTTACCTGCGACCCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CATTCCGGTTTAGAGGTCCTTGGTTTAGCACCCTCAACTGCGTTGTTACCTGCGACCCAA 355
Query 301 GAAACGTTGAGCATCTTCTCAAGACCCGTTTCTCTATCTACCCAAAGGGTTCTTACTTCC 360
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 356 GAAACGTTGAGCATCTTCTCAAGACCCGTTTCTCTATCTATCCTAAGGGTTCTTACTTCC 415
Query 361 GTGAGACCATGCAAGATCTACTCGGAGACGGGATTTTCAACACCGATGACGGAACGTGGC 420
|||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 416 GTGAGACCATGCGAGATCTACTCGGAGACGGGATTTTCAATACCGATGAAGAAACGTGGC 475
Query 421 AACGACAAAGGAAAGCAGCAAGTGTCGAATTCCATTCGGCTAAATTCAGACAATTAACCA 480
||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 476 AACAACAAAGGAAAACAGCAAGTGTCGAGTTCCATTCGGCTAAATTCAGACTGTTAACCA 535
Query 481 GTCAATCATTGCACGAACTCGTGCATAATCGACTTTTGCCGGTTCTAGAAACTTCCGGAA 540
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 536 GTCAATCATTGCACGAACTTGTGCATAATCGACTTTTGCCGGTTCTAGAAACTTCCGGCA 595
Query 541 AGATTGATCTTCAGGACATTTTGTTAAGACTAACGTTCGACAATGTATGCATGATTGCTT 600
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATATCGATCTTCAAGACATTTTGTTAAGACTAACGTTCGACAATGTATGCATGATTGCTT 655
Query 601 TCGGGGTCGATCCAGGCTGTCTTAGTCCAAAACTACCCGAAATTCCTTTTGCAAAAGCCT 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTGGGGTCGATCCAGGCTGTCTTAGTCCAAAACTACCCGAAATTCCTTTTGCAAAAGCCT 715
Query 661 TCGAGGACGCAACAGAAGCAACAGTTGTGAGATTTGTGATGCCTAAATTCGTGTGGAAGC 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCGAGGATGCAACAGAAGCAACAGTTGTGAGATTTGTGATGCCTAAATTCGTGTGGAAGC 775
Query 721 TCATGAGGTCTCTTAATTTAGGAACGGAGAAGAAGCTAAAGGAATCAATAAATGGTGTGG 780
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 776 TCATGAGGTCTCTTAATTTAGGAACGGAGAAGAAGCTAAAGAAATCAATAAAAGGTGTGG 835
Query 781 ATGATTTCGCTGAAGAAGTAATCCGGACGAGGAAGAAAGAGATGTCTCTAGAGACTGAAA 840
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 836 ATGATTTCGCTGAAGAAGTAATCCGGAGGAGGAAGAAAGAGATGTCTCTAGAGGCTGAAA 895
Query 841 TCGCGAAGAGACCTGATCTCTTGACTATTTTTATGGGTCTACGAGACGAAAATGGACAGA 900
|| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 896 TCTCGAAGAGACCTGATCTCTTGACTATCTTTATGGGTCTACGAGACCAAAATGGACAGA 955
Query 901 AATTTTCAGATAAGTTCTTGCGTGATATTTGTGTGAACTTCATACTTGCTGGGAGAGACA 960
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 956 AATTTTCAGATAAGTTTTTGCGCGATATTTGTGTGAACTTCATACTTGCTGGGAGAGACA 1015
Query 961 CTTCCTCTGTGGCTCTAAGCTGGTTTTTCTGGTTAATCGAGAAGAATCCGGAAGTGGAGG 1020
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTTCCTCCGTGGCTTTAAGCTGGTTTTTCTGGTTAATCGAGAAGAATCCGGAAGTGGAGG 1075
Query 1021 AGAAAATTATGATGGGAATTTGCAAGATTCTTGAGCAGAGGGTTGATCATGGAGATACAA 1080
||||||| |||||||||||||||||||||||||||||||| | |||||| |||||| |||
Sbjct 1076 AGAAAATCATGATGGGAATTTGCAAGATTCTTGAGCAGAGAGATGATCAGGGAGATGCAA 1135
Query 1081 AGAAGAACATGGAATATGAGCCCGTCTTCAGACCAGAAGAGATCAAGAAAATGGATTATC 1140
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1136 AGAAGAACATGGAATATGAGCCTGTGTTCAGACCAGAAGAGATCAAGAAAATGGATTATC 1195
Query 1141 TACAAGCTGCTTTGTCTGAGACTCTTAGATTGTATCCCTCTGTTCCAGTCGATCACAAAG 1200
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1196 TACAAGCTGCTTTGTCTGAGACTCTCAGATTGTATCCTTCTGTTCCAGTCGATCACAAAG 1255
Query 1201 AGGTACTTGAAGACGATGTATTTCCAGATGGGACGAAATTaaaaaaaGGAGAAAAGGTTA 1260
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1256 AGGTACTTGAAGACGATATATTTCCAGATGGGACCAAATTAAAAAAAGGAGAAAAAGTTA 1315
Query 1261 TATATGCAATATACGCGATGGGACGTATGGAAACAATTTGGGGGAAAGACTGTCGTGAGT 1320
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1316 TATACGCAATATACGCCATGGGACGCATGGAAACAATTTGGGGGAAAGACTGTCGTGAGT 1375
Query 1321 TCAAGCCAGAAAGGTGGTTAAGAGACGGCAGGTACATGAGTGAGTCGGCCTATAAGTTCA 1380
|||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||| |
Sbjct 1376 TCAAACCAGAAAGGTGGTTAAGAGATGGCCGATACATGAGTGAGTCGGCCTATAAGTTTA 1435
Query 1381 CGGCCTTCAATGGTGGTCCTCGGCTATGTCTAGGCAAGGATTTTGCGTATTACCAAATGA 1440
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1436 CGGCCTTCAATGGCGGTCCTCGGCTATGTCTAGGCAAGGATTTTGCGTATTATCAAATGA 1495
Query 1441 GATATGTAGCGGCCGCCATTATTTACCGGTATAAGGTTAGGGTTGATGATAAGGGTGGTC 1500
||||||| |||||||| ||||| ||||| |||| ||| ||||||||||||||||| ||||
Sbjct 1496 GATATGTTGCGGCCGCGATTATCTACCGATATAGGGTCAGGGTTGATGATAAGGGAGGTC 1555
Query 1501 ATAAGGTTGAGCCAAAGATGGCTCTAACTATGTACATGAAGCATGGCTTGAAGGTGAATA 1560
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1556 ATAAGGTTGAGCCAAAGATGGCTCTAACTATGTACATGAAGCATGGATTGAAGGTGAATA 1615
Query 1561 TGGTCAAGAGGAGTGTCTCTGAGATAGACCACTACTACTGCTGA 1604
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TGGTCAAGAGGAGTGTCTCTGAGATAGACCACTACTACTGCTGA 1659
> Ahg941840 jgi|Araly1|941840|scaffold_602384.1
Length=1721
Score = 1190 bits (644), Expect = 0.0
Identities = 1303/1614 (81%), Gaps = 74/1614 (5%)
Strand=Plus/Plus
Query 26 TCTGGTTTCAAGGAGGCTGTTTTC-CCTGAGAGATGTTCAGATTCTTGAGCTCTTTATTG 84
|||||||||| |||||||| |||| | ||| |||||||||| ||||||||||| ||||||
Sbjct 93 TCTGGTTTCATGGAGGCTG-TTTCTCTTGAAAGATGTTCAGGTTCTTGAGCTCCTTATTG 151
Query 85 -CCTTTTTCGTGTTTG-CGACAATACATTCCTTGCGCCAGAAGAAACACCAAGGGATGCC 142
||||||| || |||| | || |||||||||||||| ||||||||| ||||||| | ||
Sbjct 152 CCCTTTTT-GTCTTTGTC-ACTATACATTCCTTGCGTCAGAAGAAATACCAAGGTCTTCC 209
Query 143 CGTTTGGCCGTTGGTTGGCATGCTTCCTTCGT-T-GATATCCGCGGTACGAAGCAACATA 200
|| |||||||| | || ||||||||||| | | | | | || | ||| ||||||||
Sbjct 210 TGTGTGGCCGTTTCTCGGGATGCTTCCTTC-TCTAGCTTTTGGC-CTCCGAGGCAACATA 267
Query 201 TACGAATGGCTGTCTGATGTTCT-TATCAGCCAAAACGGGACATTCCGGTTTAGAGGTCC 259
||||| ||||| || |||||||| | || ||||||||| || |||| || ||||||||
Sbjct 268 TACGAGTGGCTATCCGATGTTCTCTGTC-TCCAAAACGGTACTTTCCAATTCAGAGGTCC 326
Query 260 TTGGTTTAGCACCCTCAACTGCGTTGTTACCTGCGACCCAAGAAACGTTGAGCATCTTCT 319
|||||||||| ||||||| || | ||||||||||||||||||||||||||||||| ||
Sbjct 327 CTGGTTTAGCAGCCTCAACAGCACTATTACCTGCGACCCAAGAAACGTTGAGCATCTCCT 386
Query 320 CAAGACCCGTTTCTCTATCTACCC-AAAGGGTTCTTACTTCCGTGAGACCA--TGCAAGA 376
||||| |||||||||| ||| ||| ||| ||||||||||||| ||||| | | | |||
Sbjct 387 CAAGAACCGTTTCTCTGTCTTCCCTAAA-GGTTCTTACTTCC--GAGACAATCTCCGAGA 443
Query 377 TCTACTCGGAGACGGGATTTTCAACACCGATGACGGAACGTGGCA-ACGACAAAGGAAAG 435
|| || || ||||| || ||||| | ||||| | ||| ||||| | |||||||||||
Sbjct 444 CCTCCTAGGCGACGGAATATTCAATGCGGATGATGAAACATGGCAGA-GACAAAGGAAAA 502
Query 436 CAGCAAGTGTCGAATTCCATTCGGCTAAATTCAGACAATTAACCAGTCAATCATTGCACG 495
| || || |||| || || || || ||||||||||||||||||| |||||| ||| |
Sbjct 503 CCGCGAGCATCGAGTTTCACTCAGCCAAATTCAGACAATTAACCACTCAATCTTTGTTTG 562
Query 496 AACTCGTGCATAATCGACTTTTGCCGGTTCTAGAAACTTCCGG--AA-A----G------ 542
| |||||||| || |||| || || ||||| || || | ||| || | |
Sbjct 563 AGCTCGTGCACAAGAGACTCTTACCTGTTCTTGAGACAT-CGGTTAAGAGCTCGTCTCCT 621
Query 543 ATTGATCTTCAGGACATTTTGTTAAGACTAACGTTCGACAATGTATGCATGATTGCTTTC 602
|| ||||| || ||| | ||||| || ||||| ||||| |||||||| |||||||||||
Sbjct 622 ATAGATCTACAAGACGTCTTGTTGAGGCTAACATTCGATAATGTATGTATGATTGCTTTT 681
Query 603 GGGGTCGATCCAGGCTGTCTTAGTCCAAAACTACCCGAAATTCCTTTTGCAAAAGCCTTC 662
|| ||||||||||| |||||| |||| | | ||||| ||||| ||||| ||||||||
Sbjct 682 GGAGTCGATCCAGGATGTCTTGGTCCTGATCAACCCGTGATTCCCTTTGCGAAAGCCTTT 741
Query 663 GAGGACGCAACAGAAGCAACAGTTGTGAGATTTGTGATGCCTAAATT-CGTGTGGAAGCT 721
||||| || || |||||| | ||||||||||| || |||||| | || |||||||||| |
Sbjct 742 GAGGATGCGACTGAAGCAGCGGTTGTGAGATTCGTCATGCCT-ACTTGCGTGTGGAAGTT 800
Query 722 CATGAGGTCTCTTAATTTAGGAACGGAGAAGAAGCTAAAGGAATCAATAAATGGTGTGGA 781
|||||||| ||||||||| ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 801 CATGAGGTATCTTAATTTCGGAACAGAGAAGAAGCTAAAGGAATCTATAAAGGGTGTGGA 860
Query 782 TGATTTCGCTGAAGAAGTAATCCGGACGAGGAAGAAAGAGATGTCTCTAG-AGACTGAAA 840
||||||||| |||||||| ||| ||||||||||||||||| | ||||| | || |||||
Sbjct 861 TGATTTCGCCGAAGAAGTTATCAGGACGAGGAAGAAAGAGCTCTCTCTTGAAG-GTGAAA 919
Query 841 TC-GCGAAGAGACCTGATCTCTTGACTATTTTTATGGGTCT-ACGAGACGA-AAATGGAC 897
| | |||||| | |||||||| ||| | ||||||||||| | |||| || ||| |||
Sbjct 920 -CTACAAAGAGATCGGATCTCTTAACTGTGTTTATGGGTCTGA-GAGATGAGAAA-GGAG 976
Query 898 AGAAATTTTCAGATAAG-TTCTTGCGTGATATTTGTGTGAACTTCATACTTGCTGGGAGA 956
||| |||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 977 AGAGTTTTTCAGACAAGTTTCTT-CGTGATATCTGTGTGAACTTCATACTTGCTGGGAGA 1035
Query 957 GACACTTCCTCTGTGGCTCTAAGCTGGTTTTTCTGGTTAATCGAGAAGAATCCGGAAGTG 1016
|| ||||| || |||||||| ||||||||||||||||| | ||||||||||| || ||
Sbjct 1036 GATACTTCTTCGGTGGCTCTGAGCTGGTTTTTCTGGTTGCTAGAGAAGAATCCAGAGGTC 1095
Query 1017 GAGGAGAAAATTATGATGG-GAATTTGCAAGATTCTTGAG-CAGAGGGTTGATCATGGAG 1074
|| ||||| || ||| ||| || | || |||||||| ||| ||||| | ||| ||||||
Sbjct 1096 GAAGAGAAGATCATGGTGGAGA-TGTGTAAGATTCT-GAGGCAGAGAGATGACCATGGAA 1153
Query 1075 ATACAAAGAAGAACATGGAATATGAGCCCGTCTTCAGACCAGAAGAGATCAAGAAAATGG 1134
|| || |||||| | | | ||||| || || || ||||||||||||| ||||| ||||
Sbjct 1154 ATGCAGAGAAGAG-A-G-ATTATGAACCTGTGTTTGGACCAGAAGAGATTAAGAAGATGG 1210
Query 1135 ATTATCTACAAGCTGCTTTGTCTGA-GACTCTTAGATTGTATCCCTCTGTTCCAGTCGAT 1193
||||||| ||||||||||||||||| | |||| ||||||||||| || ||||| || ||
Sbjct 1211 ATTATCTTCAAGCTGCTTTGTCTGAAG-CTCTCAGATTGTATCCTTCAGTTCCTGTGGAC 1269
Query 1194 CACAAAGAGGTACTTGAAGACGATGTATTTCCAGATGGGACGAA-ATTaaaaaaaGGAGA 1252
||||||||||| | |||||||| |||||||| ||||| || || ||| || || |||||
Sbjct 1270 CACAAAGAGGTTCAAGAAGACGACGTATTTCCTGATGGAAC-AATATTGAAGAAGGGAGA 1328
Query 1253 -AAAGGTTATATATGCAATATACGCGATGGGACGTATGGAAACAATTTGGGGGAAAGACT 1311
|||| ||||||| | || ||||| ||||| || |||||| | |||||||| |||||||
Sbjct 1329 GAAAG-TTATATACGTGATTTACGCAATGGGTCGGATGGAAGCTATTTGGGGAAAAGACT 1387
Query 1312 GTCGTGAGTTCAAGCCAGAAAGGTGGTTAAGAGACGG-CAGGTACATGAGTGAGTCGGCC 1370
|||||||||| | |||||| |||||| |||||||||| | ||| ||||||||||||||||
Sbjct 1388 GTCGTGAGTTTAGGCCAGAGAGGTGGCTAAGAGACGGAC-GGTTCATGAGTGAGTCGGCC 1446
Query 1371 TATAAGTTCACGGCCTTCAATGGTGGTCCTCGGCTATGTCTAGGCAAGGATTTTGCGTAT 1430
||||| ||||||||||| || || ||||| || || ||||||||||| |||||||| |||
Sbjct 1447 TATAAATTCACGGCCTTTAACGGCGGTCCACGCCTTTGTCTAGGCAAAGATTTTGCCTAT 1506
Query 1431 TACCAAATGAGATATGTA-G-CGGCCGCCATTA-TTTACCGGTATAAGGTTAGGGTTGAT 1487
|| || |||| | || || | ||||||| || | |||||||||| ||||| | ||| | |
Sbjct 1507 TATCAGATGA-A-ATCTACGGCGGCCGCAAT-AGTTTACCGGTACAAGGTGAAGGTGG-T 1562
Query 1488 GATAAGGGTGGTCATAAGGTTGAGCCAAAGATGGCTCTAACTATGTACATGAAGCATGGC 1547
|| | |||||| ||||| ||||| ||| |||| || || ||||||||||| |||||
Sbjct 1563 GA-A----TGGTCACAAGGTGGAGCCGAAGTTGGCACTCACAATGTACATGAAACATGGT 1617
Query 1548 TTGAAGGTGAATATGGTCAAGAGGAGTGTCTCTGAGATAGACCACTACTACTGC 1601
|||| ||||||| || |||| ||||||||||| |||||||| || ||||| |||
Sbjct 1618 TTGATGGTGAATTTGATCAATAGGAGTGTCTCCGAGATAGATCAATACTA-TGC 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5