BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08260.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940287 jgi|Araly1|940287|scaffold_600831.1 2355 0.0
> Ahg940287 jgi|Araly1|940287|scaffold_600831.1
Length=1482
Score = 2355 bits (1275), Expect = 0.0
Identities = 1419/1489 (95%), Gaps = 8/1489 (1%)
Strand=Plus/Plus
Query 64 GAGACGAGAAAGAGTTTTGGCGATGAAGAAGAACGCACTTTGGCTACTGTGCATTCTGGT 123
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAGAGAAAGCG-TTTGGCGATGAAGAAGAACGCACTTTGGCTACTGTGCATTCTGGT 59
Query 124 GTTACCGGCGATAGCCTGTGGTAGGAAACCGGAGAAGAAGGTAACAATTTCATCCTCTGG 183
||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 60 GTTACCGGCGATAGCCTGTGGTAGGCAACCGGGGAAGAAGGTAACAGTTTCATCCTCTGG 119
Query 184 GAGGAAGGAAGATGACCTTGTAACCGGTTTGCCCGGCCAACCACCGGTTAACTTCAAACA 243
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 GAGGAAAGAAGATGACCTGGTAACCGGTTTGCCCGGCCAACCACCGGTTAACTTTAAACA 179
Query 244 CTACGCCGGTTACGTGAATCTGGGGCCTGAACAGAAGCAAAAGGCACTTTTCTATTGGTT 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CTACGCCGGTTACGTGAATCTGGGGCCTGAACAGAAGCAGAAGGCACTTTTCTATTGGTT 239
Query 304 CTTCGAAGCTCAACAAAACTCTTCTCGTCGTCCTCTCGTCCTTTGGCTCAATGGAGGACC 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTCGAAGCCCAACAAAACTCTTCTCGTCGTCCTCTCGTCCTTTGGCTCAATGGAGGACC 299
Query 364 GGGTTGCTCATCAATAGCCTATGGAGCTGCACAAGAACTAGGCCCTTTTCTTGTTCACGA 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GGGTTGCTCATCAATAGCCTATGGAGCTGCACAAGAACTAGGCCCTTTTCTTGTTCAC-A 358
Query 424 C-AACGGTGGCAAACTTACCTACAATCATTTCTCTTGGAACAAAGAGGCCAATATGTTGT 482
| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 359 CCAACGGTGACAAACTTACCTACAATAATTTCTCCTGGAACAAAGAGGCCAATATGTTGT 418
Query 483 TCTTGGAAGCGCCGGTTGGGGTTGGGTTCTCGTATACCAATAACTCAATGGATCTTCAAA 542
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTTGGAAGCACCGGTTGGGGTTGGGTTCTCGTATACCAATAACTCAATGGATCTTCAAA 478
Query 543 AGCTTGGAGATGAAGTTACTGCATCGGACTCTCTTGCTTTCCTGATCAACTGGTTCATGA 602
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 479 AGCTTGGAGATGAAGTTACCGCAGCGGACTCTCTTGCTTTCTTGATCAACTGGTTCATGA 538
Query 603 AATTCCCCGAGTTCCGATCCAGCGAGTTCTACATCTCTGGCGAGAGTTACGCCGGTCACT 662
||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct 539 AATTCCCCGAGTTCCGATCCAACGAGTTTTACATCTCCGGAGAGAGTTACGCCGGTCACT 598
Query 663 ATGTTCCTCAGCTCGCGGAGGTAATTTACGACAGGAACAAGAAGGTTACGAAAGACTCTA 722
||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 599 ATGTTCCTCAGCTTGCGGAGGTAATTTACGACAGGAACAAGAAG---ACAAAAGACTCTC 655
Query 723 GCATTAATCTCAAGGGATTCATGATAGGGAACGCGGTGATCAATGAGGCAACAGACATGG 782
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 GCATTAATCTCAAGGGTTTCATGATAGGGAATGCGGTGATCAATGAGGCAACAGACATGG 715
Query 783 CAGGACTAGTGGACTACGCATGGAGCCACGCTATAATATCGGACGAGGTCCACACCAGCA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 716 CAGGACTAGTGGACTACGCATGGAGCCACGCTATAATATCGGACGAGGTCCACACCAACA 775
Query 843 TCCATGGCTCGTGCAGTTTTGAGGAAGATACCACCAACAAGACCGAACAATGCTACAACA 902
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TCCATGGCTCGTGCCGTTTTGAGGAAGATACCACCAACAAGACCGAACAATGCTACAACA 835
Query 903 ATTTCAAAGGGTTCATGGATGCTTACAATGATATCGATATATACAGTATCTACACTCCCG 962
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 836 ATTTCAAAGGGTTCATGGATGCTTACAACGATATCGATATATACAGCATCTACACTCCCG 895
Query 963 TTTGCCTCTCCTCTTTGTTGTCATCTTCTCCAAGAAAACCTAAAATCGTCGTGTCTCCTC 1022
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 896 TTTGCCTCTCCTCTTTGTCCTCATCTTCTCCAAGTAAACCTAAAATTGTCGTGTCTCCTC 955
Query 1023 GTCTCCTTACTTTTGACGATTTGTGGGACAAGTTTCCGGCCGGGTACGATCCATGCACTG 1082
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 956 GTCTCCTTACTTTTGACGACATGTGGGTCAAGTTTCCGGCCGGGTACGATCCATGCACTG 1015
Query 1083 AAAGTTATGCCGAGAATTACTTTAACCGGAAAGATGTGCAGGTTGCACTCCATGCGAACG 1142
|| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 AAGGTTATGCCGAAAATTATTTTAACCGGAAAGATGTGCAGGTTGCACTCCATGCGAATG 1075
Query 1143 TCACCAACCTTCCTTATCCGTACTCTCCTTGCAGCGGAGTAATAAAGAGATGGAGTGATG 1202
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1076 TCACAAACCTTCCTTATCCGTACTCTCCTTGCAGCGGAGTAATAAAGAGATGGAATGATG 1135
Query 1203 CTCCATCCACCATGATTCCCATCATACAAAAGCTTTTGACGGGTGGCCTCCGTATCTGGA 1262
||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 1136 CTCCATCCACCATGATTCCCACCATACAAAAGCTTTCAACGGGCGGCCTCCGCATCTGGA 1195
Query 1263 TCTATAGTGGAGATACGGATGGGAGAGTTCCGGTAACATCTACACGTTATAGCATAAAAA 1322
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1196 TCTATAGCGGAGATACGGACGGGAGAGTTCCGGTAACATCTACACGCTATAGCATAAAAA 1255
Query 1323 AGATGGGACTTAAGGTCGAGTCACCGTGGAGGTCATGGTTCCACAAGAGTCAAGTAGCTG 1382
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 AGATGGGACTTAAGGTTGAGTTACCGTGGAGGTCATGGTTCCACAAGAGTCAAGTGGCTG 1315
Query 1383 GATGGGTTGAGACTTATGCCGGTGGACTAAATTTTGTCACGGTGAGAGGAGCCGGTCACC 1442
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1316 GATGGGTTGAGACTTATGCCGGAGGACTAACGTTTGTCACGGTGAGAGGAGCCGGTCACC 1375
Query 1443 AGGTTCCGGCCTTGGCTCCGGCGCAATCTCTCACATTATTCTCTCACTTCATTTCTTCTG 1502
|||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1376 AGGTTCCGTCCTTTGCTCCGGCGCAATCTCTCACATTATTCTCTCACTTCCTTTCTTCAG 1435
Query 1503 TCCCCTTGCCTTCAAAACGGTTCTGATATCAGTACCGTCAAGTCATGAT 1551
| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1436 TGCCCTTGCCTTCAAAACGGTTCTGAT--CAGTACCGTCAAGTCATGAT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5