BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08270.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487659 jgi|Araly1|487659|fgenesh2_kg.6__793__AT5G08270.1 2019 0.0
> Ahg487659 jgi|Araly1|487659|fgenesh2_kg.6__793__AT5G08270.1
Length=1381
Score = 2019 bits (1093), Expect = 0.0
Identities = 1292/1386 (93%), Gaps = 21/1386 (2%)
Strand=Plus/Plus
Query 1 GAATCAATCACCGAAAGAGATCTTTCAACTGAAGCA----C--C-TGCGATTCATCTTCT 53
|||||||||||| |||||||| |||||||||||||| | | |||||||||||||||
Sbjct 1 GAATCAATCACCCAAAGAGATGTTTCAACTGAAGCAGTTGCTGCGTGCGATTCATCTTCT 60
Query 54 TCTCTGCCCGTCGTTTCAACGTGAGGAGAAAAAAGAATGGCGTTTGCAAAAATGATGTTT 113
||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 61 TCTCTGCCCGTCGATTCAACGTGAGGAGGAAAAAGAATGGCGTTTTCAAAAATGATGTTT 120
Query 114 CTTTTCGGAAAATTTCAGCAGGGTGTTGGTGTTCTAGCAAAGAGTACCACTTTTGCTAAG 173
|||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 121 CTTTTCAGCAAATTTCAGCAGGGTGTTGGTATTCTAGCAAAGAGTACTACTTTTGCTAAG 180
Query 174 AATCCAAGGCAACTGCAATTTGAAGCCGACATTAACAAATTGTTTATGTTTACAAGCTAT 233
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 AGTCCAAGGCAACTGCAATTTGAAGCCGACATTAACAAACTGTTTATGTTTACAAGCTAT 240
Query 234 AATCGTTTGGGACGAGATGCTGAGGAGGCTGATGCTGAAGAGATTATTGAGATGGCTGGT 293
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 241 AATCGTTTGGGACGAGATGCTGAGGAGGCTGATGCAGAAGAGATCATTGAGATTGCTGGT 300
Query 294 AAAGCCACTTTCTCTGAGCAACAGAAGCAAGTTCAGGAGAACATTCACTACCAACTCCAA 353
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 301 AAAGCCACTTTATCTGAGCAACAGAAGCAAGTTCAGGAGAACATTCACTACCAAGTCGAA 360
Query 354 AATTTTTGTTCTTCAATGAACGAGATTCTTCTTACCAATATTGACAAAACAAAGGAT--- 410
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 361 AATTTTTGTTCTTCGATGGACGAGATTCTTCTTACCAATATTAACAAAACAAAGGAAGAA 420
Query 411 CTAAATGAGCCAGGATCAGAATCGAGAAGGGACAACATTGTCCCAGCTGCAGACAAGCCC 470
||| || |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 421 CTATATAAGCCAGGATCAGAATCAAGAAGGGACAACAATGTCCCAGCTGCAGACAAGCCC 480
Query 471 ATTGTTCCTGAGACTAAACCGCTGAAACTCGATGAAGTCTCACATCGATTAAAGGATCGA 530
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 481 ATTGTTCCTGAGACTAAACCGCTGAAACTCGCTGAAGTCTCACATCAATTAAAGGATCGA 540
Query 531 GTTGGGTACACCCTTGAGATCAAACCATCGTTAATACCTCACAAAGACGCGGGTCAAGGT 590
||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 541 ATTGGGTACACCCTCCAGATCAAACCATCCTTAATACCTCACAAAGATGCGGGTCAAGGC 600
Query 591 TGTTTTATAGAAGGTGAAGCAGATGTGGGAGCTGTCCTAGCCTTTTACCCTGGTGTGATT 650
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TGTTTTATAGAAGGTGAAGCAGATGTGGGAGCTGTCGTAGCCTTTTACCCTGGTGTGATT 660
Query 651 TACTCTCCTGCATTCCACAGATACATTCCCGGGTATCCAAATGTTGATGCACAGAACTCA 710
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 TACTCTCCTGCATTCTACAGATACATTCCCGGGTACCCAAATGTTGATGCACAGAACTCA 720
Query 711 TATCTGATCACTGGGTATGATGGGACGGTAATAAACGCTCAACCTTGGGGTCGTGGAGGA 770
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 721 TATCTGATCACTGGGTATGACGGGACGGTAATAAACGCTCAACCTTGGGGTCTTGGAGGA 780
Query 771 -ATATCTCGGGAAGTATGGAACGGCTCCTTTACAACGCCTGAGATCAGAACAGA-AGCTA 828
| ||| |||||||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct 781 GA-ATCACGGGAAGTATGGAACGGCTCCTTTTCAACGCCTGAGATCAGAACAGACA-CTA 838
Query 829 CAACCA-CGGAAAACAGTTCAGATAAGGTATGGAAGATGCTGAGTAGGCCGCTTGAAGGT 887
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 839 CAAC-AGCGGAAAACAGTTCCTCCAAGGTATGGAAGATGCTGAGTAGGCCGCTTGAAGGT 897
Query 888 TCAGGTGGTGTAGAAGCGGTTATTGAAATGAGAAACCCGTTAGCGTTTGGTCATTTCATC 947
|| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCGGGTAGTGTAGAAGCGGATCTTGAAATGAGAAACCCGTTAGCGTTTGGTCATTTCATC 957
Query 948 AACCACCCTGGTAAAGAAATGGAATCTAATGTCATGATTTGCCCTTACGACTTCC-TGTT 1006
|| |||||||||||||| |||||| ||||||||||||| ||||| |||||||||| | ||
Sbjct 958 AATCACCCTGGTAAAGACATGGAACCTAATGTCATGATGTGCCCCTACGACTTCCCT-TT 1016
Query 1007 GTCAGAGACAGAGATGCGAGCTTACATTCCGAATGTAGCTTTCGGGAACACAGGAGATGT 1066
|||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||
Sbjct 1017 GTCAGAGACAGAGATGCGAGCTTACATTCCGAATGTAGCTTTTGGGAACATAGAAGACGT 1076
Query 1067 AAAGATGGGGAGATTTGAAAGCTTCTTGTCTAGGACAGGAAGTAATAGCAGTTTGGATGC 1126
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AAAGATGGGGAGATTTGGAAGCTTCTTGTCTAGGACAGGAAGTAATAGCAGTTTGGATGC 1136
Query 1127 TCATGTGCTGAAGACAATTGTTCTCGTGGCTACAAAAGCGTTGTGCAATGAGGAACTGAT 1186
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCCTGTGCTGAAGACACTTGTTCTCGTGGCTACAAAAGCGTTGTGCAATGAGGAACTGAT 1196
Query 1187 GCTGAATTACAGGCTGAGCAATTCCGAGAAAAGACTCGAGTGGTATATTCCACTTGATGA 1246
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1197 GCTGAATGACAGGCTGAGCAATTCCGAGAAAAGACTGGAGTGGTATATTCCACTCGATGA 1256
Query 1247 ATAAGAAGATCGGAG-GAAATGAAGCTGAAGTCTCTGGATTTTATTTTGTCTCTCTAATT 1305
| |||||||||| || ||| || ||||||||| ||||| |||||||||||| ||||||||
Sbjct 1257 ACAAGAAGATCGAAGAGAA-TGGAGCTGAAGTATCTGGTTTTTATTTTGTCCCTCTAATT 1315
Query 1306 TCTTGTGTACTAGTTTCATCGTGGGAC-AGaaaaaaaGGGGTACAATTGCAAGATGAATT 1364
||||||| ||||||||||| ||||||| | |||||||||||||||||||||||| |||||
Sbjct 1316 TCTTGTGAACTAGTTTCATAGTGGGACCAAAAAAAAAGGGGTACAATTGCAAGAGGAATT 1375
Query 1365 TAATCT 1370
||||||
Sbjct 1376 TAATCT 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5