BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08280.1
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940289 jgi|Araly1|940289|scaffold_600833.1 1953 0.0
> Ahg940289 jgi|Araly1|940289|scaffold_600833.1
Length=1191
Score = 1953 bits (1057), Expect = 0.0
Identities = 1141/1183 (96%), Gaps = 0/1183 (0%)
Strand=Plus/Plus
Query 183 CTCCACCTGAATCCATGGATATTGCTTCGTCATCTCTCTCACAAGCTCACAAAGTCGTTC 242
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 9 CTCCACCTGAATCCATGGATATCGCTTCATCATCTCTTTCACAAGCTCACAAAGTCGTTC 68
Query 243 TCACGCGTCAACCTTCTTCCCGGGTCAACACCTGCTCCCTTGGCTCGGTCTCCGCTATCG 302
||||||||||||||||||| ||||||||| ||||||||||||| || ||||| |||||||
Sbjct 69 TCACGCGTCAACCTTCTTCTCGGGTCAACTCCTGCTCCCTTGGTTCTGTCTCAGCTATCG 128
Query 303 GATTCTCTCTTCCGCAGATTAGCTCTCCAGCTTTAGGTAAATGTCGCCGGAAACAAAGCT 362
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 129 GATTCTCTCTTCCGCAGATTAGCTCTCCAGCTTTAGCTAAATGTCACCGCAAACAAAGCT 188
Query 363 CTTCTGGGTTCGTGAAAGCTTGTGTTGCTGTTGAACAGAAAACCCGAACTGCTATCATCA 422
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 189 CTTCTGGGTTCGTGAAAGCTTGTGTTGCTGTTGAACAGAAGACCCGAACTGCTATCATCA 248
Query 423 GAATTGGCACAAGGGGAAGTCCTCTAGCACTTGCTCAAGCATACGAGACGCGAGAAAAGC 482
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GAATTGGCACAAGAGGAAGTCCTCTAGCACTTGCTCAAGCATACGAGACGCGAGAAAAGC 308
Query 483 TCAAGAAGAAACACCCTGAACTCGTTGAAGATGGAGCTATTCATATCGAGATCATTAAAA 542
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 309 TCAAGTCGAAACACCCTGAACTTGTTGAAGATGGAGCTATTCATATCGAAATCATCAAAA 368
Query 543 CGACTGGTGATAAGATTCTTTCGCAACCGCTTGCTGATATTGGTGGGAAAGGACTTTTCA 602
| || |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 369 CCACCGGTGATAAGATTCTATCTCAACCGCTTGCTGATATTGGTGGGAAAGGACTTTTCA 428
Query 603 CCAAAGAAATAGACGAGGCCTTGATAAATGGTCATATTGACATAGCTGTGCACTCAATGA 662
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 429 CCAAAGAAATAGACGAGGCCTTGATAAATGGTCATATTGACATAGCTGTTCACTCGATGA 488
Query 663 AAGATGTCCCAACTTACTTACCAGAAAAAACGATTTTACCTTGTAACCTTCCGCGTGAGG 722
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 489 AAGATGTCCCAACTTATTTACCTGAAAAAACGATTTTACCTTGTAACCTTCCACGTGAGG 548
Query 723 ATGTTCGAGATGCGTTTATTTGTCTAACTGCAGCCACGTTAGCTGAGCTTCCAGCTGGAA 782
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 549 ATGTTCGAGATGCGTTTATTTGTCTGACTGCAGCCTCGTTAGCTGAGCTTCCAGCTGGAA 608
Query 783 GCGTTGTGGGAACAGCTTCTCTCAGGAGAAAATCGCAGATTCTCCACAAATATCCTGCAT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GCGTTGTGGGAACAGCTTCTCTCAGGAGAAAATCGCAGATTCTCCACAAATATCCTGCAT 668
Query 843 TACATGTTGAGGAAAACTTCAGGGGTAATGTGCAGACAAGACTATCAAAACTACAAGGAG 902
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 669 TACATGTTGAGGAAAACTTTAGGGGTAATGTGCAGACAAGACTATCAAAACTTCAAGGAG 728
Query 903 GAAAGGTCCAAGCAACTCTATTAGCACTAGCTGGTCTTAAGAGATTGAGTATGACAGAGA 962
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 729 GAAAGGTCCAAGCCACTCTATTAGCACTAGCTGGTCTCAAGAGATTGAGTATGACAGAGA 788
Query 963 ATGTCGCATCTATCTTATCTCTCGATGAAATGCTTCCAGCTGTTGCTCAAGGAGCTATTG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ATGTCGCATCTATCTTATCTCTCGATGAAATGCTTCCAGCTGTTGCTCAAGGAGCTATTG 848
Query 1023 GAATTGCCTGTAGAACTGATGATGATAAAATGGCAACTTACTTAGCCTCACTGAACCACG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAATTGCCTGTAGAACTGATGATGATAAAATGGCAACTTACTTAGCCTCACTGAACCACG 908
Query 1083 AGGAAACAAGACTAGCGATTTCATGCGAGAGAGCTTTTCTTGAAACGCTAGATGGCTCAT 1142
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 909 AGGAAACAAGACTAGCGATTTCATGCGAGAGAGCATTTCTTGAAACGCTAGATGGCTCAT 968
Query 1143 GCCGTACTCCTATTGCTGGATACGCATCCAAGGACGAAGAAGGCAACTGCATTTTCAGAG 1202
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 969 GCCGTACTCCTATTGCTGGATACGCAGCCAAGGACGAAGAAGGCAACTGCATTTTCAGAG 1028
Query 1203 GATTGGTTGCTTCCCCTGACGGTACTAAAGTTCTTGAGACCTCAAGAAAAGGTCCATACG 1262
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1029 GATTGGTTGCCTCCCCTGACGGTACTAAAGTGCTTGAGACCTCAAGAAAAGGTCCATACG 1088
Query 1263 TGTATGAAGACATGGTGAAGATGGGAAAAGACGCGGGGCAAGAATTGCTATCTCGTGCTG 1322
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1089 TGTATAAAGACATGGTGAAGATGGGAAAAGATGCGGGGCAAGAATTGCTTTCTCGTGCTG 1148
Query 1323 GTCCTGGCTTCTTCGGCAACTGAGCCATTCGAAGAAGAGGAGG 1365
||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1149 GTCCTGGCTTCTTCGGCAACTAAGCCATTCGAAGAAGAAGAGG 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60296857835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5