BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08300.1
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487662 jgi|Araly1|487662|fgenesh2_kg.6__796__AT5G08300.1 2388 0.0
Ahg489184 jgi|Araly1|489184|fgenesh2_kg.6__2318__AT5G23250.1 1059 0.0
> Ahg487662 jgi|Araly1|487662|fgenesh2_kg.6__796__AT5G08300.1
Length=1456
Score = 2388 bits (1293), Expect = 0.0
Identities = 1406/1460 (96%), Gaps = 9/1460 (1%)
Strand=Plus/Plus
Query 1 AAAAGTGTAGCCTTTAA-AGGAAGCCTCTTTTGTCGGCTTTTGATCTCAGCTGATTCTTC 59
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAAAGTGTAGCC-TTAAGAGGAAGCCTCTTTTGTCGGCTTTTGATCTCAGCTGATTCCTC 59
Query 60 AAAACCGAGCTCCGCTGAATTTTCTTTGCTCCATTTCCGTCTTCACACAGTTTAGGGTTC 119
||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 60 AAAACTAAGCTCCGCTGAATTTTCTTTGTTCCATTTCCGTCTTCACCCAGTTTAGGGTTC 119
Query 120 ACAACTTGATTCGGATCGA-AAGCACCGAGAAGAAGAAGCCAATCAATCATGTCTAGACA 178
|||| |||||||||||||| || ||||||||||||||||||| |||||||||||||| ||
Sbjct 120 ACAAGTTGATTCGGATCGAGAA-CACCGAGAAGAAGAAGCCAGTCAATCATGTCTAGGCA 178
Query 179 AGTGGCAAGGCTTATCGGATCTCTGTCATCAAAAGCTCGCCGTTGTTCTACCGGCGGCTC 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGTCGCAAGGCTTATCGGATCTCTGTCATCAAAAGCTCGCCGTTGTTCTACCGGCGGCTC 238
Query 239 AGAGGTTTTTCCGTCATGCCAGTCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGAGGTTTTTCCGTCATGCCAGTCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTC 298
Query 299 GGATCCTCATCCTCCTGCGGCGGTTTTCGTTGACAAAAACACACGAGTCCTCTGTCAAGG 358
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 299 GGATCCTCATCCTCCTGCGGCTGTTTTCGTTGACAAAAACACACGAGTCATGTGTCAAGG 358
Query 359 CATCACCGGAAAGAACGGCACTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAAT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TATCACCGGAAAGAACGGCACTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAAT 418
Query 419 GGTGGCAGGAGTGACACCGAAGAAGGGTGGAACAGAACACTTGGGTCTCCCAGTTTTCAA 478
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 419 GGTGGCAGGAGTGACACCGAAGAAGGGTGGAACAGAACACTTAGGTCTCCCTGTTTTCAA 478
Query 479 CTCTGTTGCTGAAGCTAAGGCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTCTGTTGCTGAAGCTAAGGCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGC 538
Query 539 TCCTTTTGCTGCTGCTGCTATTATGGAGGGTATTGAGGCTGAGTTAGATCTTATTGTGTG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACCTTTTGCTGCTGCTGCTATTATGGAGGGTATTGAGGCTGAGTTAGATCTTATTGTGTG 598
Query 599 TATCACCGAAGGAATCCCTCAACATGACATGGTACGTGTAAAGCATGCTCTTAACAGTCA 658
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 599 TATTACCGAAGGAATCCCTCAACATGACATGGTACGTGTTAAGCATGCTCTTAACGGTCA 658
Query 659 ATCGAAAACTAGGCTGATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAA 718
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATCCAAAACTAGGCTGATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAA 718
Query 719 AATTGGAATTATGCCGGGATACATCCACAAGCCTGGGAAGATTGGAATTGTCTCACGATC 778
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 719 GATTGGAATTATGCCGGGATACATCCACAAGCCTGGGAAGATCGGAATTGTCTCGCGATC 778
Query 779 TGGAACCTTGACATATGAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGGAACCTTGACATATGAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTAC 838
Query 839 TTGTGTAGGAATCGGTGGGGATCCTTTTAACGGGACAAACTTTGTCGACTGCTTGGAGAA 898
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TTGTGTAGGAATTGGTGGGGATCCTTTTAACGGGACAAACTTTGTTGACTGCTTGGAGAA 898
Query 899 ATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGAGGCACTGC 958
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 ATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATAGGAGAAATCGGAGGCACTGC 958
Query 959 AGAAGAAGATGCTGCAGCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAAGAAGATGCTGCAGCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTT 1018
Query 1019 TATTGCTGGACTTACTGCACCACCGGGTCGTCGAATGGGTCATGCCGGAGCCATTGTTTC 1078
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1019 TATTGCCGGACTTACTGCACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTC 1078
Query 1079 CGGTGGTAAAGGTACGGCTCAGGACAAAATTAAGAGTTTGAATGATGCTGGAGTGAAGGT 1138
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1079 TGGTGGTAAAGGTACGGCTCAGGACAAAATTAAGAGTTTGAATGATGCCGGGGTGAAGGT 1138
Query 1139 TGTTGAATCTCCGGCTAAGATTGGATCAGCGATGTATGAGCTCTTTCAAGAAAGAGGTCT 1198
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1139 TGTTGAATCTCCGGCTAAGATTGGAGCAGCGATGTATGAGCTCTTTCAAGAAAGAGGTCT 1198
Query 1199 TTTGAAGCAGTGAAGTGAATTTCACTAGCTTT--CGCTTCtttttttCCATCTTGAAACC 1256
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1199 TTTGAAGCAGTGAAGTGAATTTCACGAGCTTTTTCGCTTCTTTTTTTCCATCTTGAAACC 1258
Query 1257 TTCAAGaaaaaa-gaaaagaaaaaaaCCCTAATTCCACGCCATTGATGGCTGCACACTTT 1315
|||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 1259 TTCAAGAAAAAAAGAAAA-AAAAAA-CCCTAATTCCACGCCATTGATGGCTGCACACTCT 1316
Query 1316 TTTGGGGTTTGTTTTGCTATATTGATATGATTTTTCCAATTGAACAGTGATAATTAAAAG 1375
||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct 1317 TTTGGGGTTTGTTTTGCTAAATTGATATGATTTTTCCAATTGAAGAGTGATAATTCAAAG 1376
Query 1376 AGATTCAAATCTTATGGCATTGGATTATTTTTAATGTTATCTTCCAGTACAAGAAATAAG 1435
||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||| |
Sbjct 1377 AGATTCAAATCTTATTGCATTGGATCATTTTTAATGATATCTTCCAGTGCAAGAAATATG 1436
Query 1436 AGTGAAGCAATGTTTCTTTA 1455
|| |||||||||||||||||
Sbjct 1437 AGGGAAGCAATGTTTCTTTA 1456
> Ahg489184 jgi|Araly1|489184|fgenesh2_kg.6__2318__AT5G23250.1
Length=1275
Score = 1059 bits (573), Expect = 0.0
Identities = 831/955 (87%), Gaps = 20/955 (2%)
Strand=Plus/Plus
Query 261 TCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTCGGA-TCCTCATCCTCCTGCGGC 319
||||||||||| ||||| || ||||||||||||| | | | ||||| |||||||||||
Sbjct 160 TCTCTCACTTCATTGACACAGTCTCGCTCCTTCGGGAC-AACTCCTCCGCCTCCTGCGGC 218
Query 320 GGT-TTTCGTTGACAAAAACACACGAGTCCTCTGTCAAGGCATCACCGGAAAGAACGGCA 378
|| ||| || ||||||||||| || ||| |||| ||||| || ||||||||||| || |
Sbjct 219 TGTCTTT-GTCGACAAAAACACCCGCGTCATCTGCCAAGGTATTACCGGAAAGAATGGTA 277
Query 379 CTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAATGGTGGCAGGAGTGACACCGA 438
| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 278 CCTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAA 337
Query 439 AGAAGGGTGGAACAGAACACTTGGGTCTCCCAGTTTTCAACT-CTGTTGCTGAAGCTAAG 497
||||||||||||| ||||| |||||||| || ||||| || | |||||||||||||||||
Sbjct 338 AGAAGGGTGGAACTGAACATTTGGGTCTACCTGTTTTTAA-TACTGTTGCTGAAGCTAAG 396
Query 498 GCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGCTCCTTTTGCTGCTGCTGCT 557
||||| || ||||||||||||||||||||||| || ||||| ||||| ||||||||||||
Sbjct 397 GCTGAGACTAAAGCCAATGCCTCTGTGATTTACGTACCTGCGCCTTTCGCTGCTGCTGCT 456
Query 558 ATTATGGAGGGTATTGAG--GCTGAGTTAGATCTTATTGTGTGTATCACCGAAGGAATCC 615
|| ||||| ||| || || |||||||||||||| ||||| || || || |||||||| |
Sbjct 457 ATCATGGAAGGT-TT-AGCTGCTGAGTTAGATCTCATTGTCTGCATTACTGAAGGAATTC 514
Query 616 CTCAACATGACATGGTACGTGTAAA-GCATGCTCTTAACAGTCAATCGAAAACTAGGCTG 674
|||||||||||||||| || ||||| || |||||||||||||||||| |||||||||||
Sbjct 515 CTCAACATGACATGGTTCGCGTAAAGGC-TGCTCTTAACAGTCAATCAAAAACTAGGCTA 573
Query 675 ATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCG 734
||||| || ||||||||||| |||||||| |||||||||||||| ||||| || ||||||
Sbjct 574 ATTGGCCCTAACTGCCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCG 633
Query 735 GGATACATCCACAAGCCTGGGAAGATTGGAATTGTCTCACGATCTGGAACCTTGACATAT 794
||||||||||||||||| |||||||| || ||||| || ||||||||||| |||||||||
Sbjct 634 GGATACATCCACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATAT 693
Query 795 GAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTACTTGTGTAGGAATCGGT 854
||||||||||||||||| |||||||| ||||| || |||||||| |||||||||||||||
Sbjct 694 GAAGCTGTTTTCCAAACTACTGCAGTAGGTCTGGGGCAATCTACATGTGTAGGAATCGGT 753
Query 855 GGGGATCCTTTTAACGGGACAAACTTTGTCGACTGCTTGGAGAAATTCTTTGTTGATCCT 914
|||||||| ||||| || ||||| ||||| |||||||||||||| ||||||| ||| |||
Sbjct 754 GGGGATCCGTTTAATGGCACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGCTGACCCT 813
Query 915 CAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGAGGCACTGCAGAAGAAGATGCTGCA 974
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 814 CAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGTGGTACTGCAGAAGAAGATGCCGCT 873
Query 975 GCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTTTATTGCTGGACTTACT 1034
|| ||||| |||| ||||||||| || |||||||| |||||||| |||||||||||||||
Sbjct 874 GCTTTGATTAAGGAAAGTGGTACAGACAAGCCTGTAGTTGCTTTCATTGCTGGACTTACT 933
Query 1035 GCACCACC-GGGTCGTCGAATGGGTCATGCCGGAGCCATTGTTTCCGGTGGTAAAGGTAC 1093
|||||||| ||| ||||| ||||||||||| |||||||||||||| |||||||| || ||
Sbjct 934 GCACCACCCGGG-CGTCGTATGGGTCATGCGGGAGCCATTGTTTCTGGTGGTAAGGGCAC 992
Query 1094 GGCTCAGGACAAAATTAAGAGTTTGA-ATGATGCTGGAGTGAAGGTTGTTGAATCTCCGG 1152
||||| ||||| || ||||| | | | || || ||||| ||||| ||||| || || |
Sbjct 993 AGCTCAAGACAAGATAAAGAGCCTAAGA-GACGCAGGAGTTAAGGTGGTTGAGTCACCAG 1051
Query 1153 CTAAGATTGGAT-CAGCGATGTATGAGCTCTTTC-AAGAAAGAGGTCTTTTGAAG 1205
|||||||||| | | ||||||| |||| | |||| ||||||||||||||||||||
Sbjct 1052 CTAAGATTGG-TGCGGCGATGTTTGAGAT-TTTCCAAGAAAGAGGTCTTTTGAAG 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5