BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08315.1
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892759 jgi|Araly1|892759|Al_scaffold_0006_755 311 2e-84
> Ahg892759 jgi|Araly1|892759|Al_scaffold_0006_755
Length=243
Score = 311 bits (168), Expect = 2e-84
Identities = 223/249 (90%), Gaps = 6/249 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGGTTTGAAAGTTTTTTCCTTTGCTTTGCTCCTTATTCTCACTTTCTCACTTATT 60
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||
Sbjct 1 ATGGCTGGTTTGAAAGTTTTTTGTTTTGCTTTGCTCCTTGTTCTCACTTTTTCA---GTT 57
Query 61 GATGTTGAAGGATATAATGTAGAGAATGGTGGTTCCTTGTGTTGTAATAACCACCCGAAA 120
||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 58 GATGTTGAAGGATATGTTGTAGAG-A--GTGGTTCCTTGTGTTGTAATAGCCACCCGAAA 114
Query 121 TTTGGAAAGTGCAACACAAAAAATGACGACCAGAGATGTAACAGTTGGTGTCTCAATGGA 180
|||||||||||||||||||| || ||||| |||||||| ||||||||||||| |||||||
Sbjct 115 TTTGGAAAGTGCAACACAAACAACGACGAGCAGAGATGCAACAGTTGGTGTCACAATGGA 174
Query 181 TGCGACAATGGAAAAGGCGGTTACTGCAAATCTATGTCTCACGGAGGACAATGCCACTGT 240
|||| |||||||| |||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 175 TGCGGCAATGGAAGAGGCGGTTTCTGCAAATCTCTGCCTCACGGAGGACAATGCCACTGT 234
Query 241 TATTGTTAA 249
|||||||
Sbjct 235 CGTTGTTAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8630546986
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5