BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G08320.1

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940294 jgi|Araly1|940294|scaffold_600838.1                        761    0.0  


> Ahg940294 jgi|Araly1|940294|scaffold_600838.1
Length=499

 Score =  761 bits (412),  Expect = 0.0
 Identities = 470/498 (94%), Gaps = 3/498 (1%)
 Strand=Plus/Plus

Query  80   GTGAAGATCGAATCTTAAAACCATGGCTTCTCCGACCAATTCACAGAAAACAGTTTCGGA  139
            |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    GTGAAGATCGAACCTTAAAACCATGGCTTCTCCGACTAATTCACAGAAAACAGTTTCGGA  60

Query  140  TGACGAGGAAGTTGATTACTCCATCAAACCGGAGTTCTATGATTCAGATATTGATGATAA  199
            |||||| || |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct  61   TGACGACGAGGTTGATTACTCCATCAAACCAGAATTCTATGATTCAGATCTTGATGATAA  120

Query  200  AGATGAGCTTTGGATGGATAAGAAGAGAGATGGTCGTACTTCTGATGCTCTTCTTAGCTG  259
            ||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct  121  AGATGAGCTATGGATGGTTAAGAAGAGAGATGGTCGTACTTCTGATGCTGTACTTAGCTG  180

Query  260  TCCAGCTTGTTTCACCACTGTCTGCTTAGAGTGTCAGAGGCACGAGCAGTATGTGACACA  319
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  181  TCCAGCTTGTTTCACCACTGTTTGCTTAGAGTGTCAGAGGCACGAGCAGTATGTGACACA  240

Query  320  GTACAGAGCAGTCTTTGTGGTCAATTGCAAAGTAGG-TACAGACACAGTTTTGCAACAGA  378
            |||||| |||||||||||||||||||||||||| || |||||||| |||||||||||| |
Sbjct  241  GTACAGGGCAGTCTTTGTGGTCAATTGCAAAGT-GGATACAGACAGAGTTTTGCAACAAA  299

Query  379  ATACAATGCCCTTAAAGGTTGGTAAAAGAAGGAGAGATTCCGAGATGCAAGAAACTGGTT  438
            || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  ATGCAATGCCCTCAAAGGTTGGTAAAAGAAGGAGAGATTCCGAGATGCAAGAAACTGGTT  359

Query  439  CTGAAGATAGCGAAAAAGTTAACCCGGTCTTTTGCTCAGCTTGTTCCACAGAGATCGGAG  498
            ||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  360  CTGAAGGCAGCGAAAAAGTTAACCCGGTCTTTTGCTCGGCTTGTTCAACAGAGATCGGAG  419

Query  499  TAGTTGACAGTGAAGAGATCTACCATTTCTTTAATGTCATTCCAAGCGAGCCTTAAAACA  558
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct  420  TAGTTGACAGTGAAGAGATCTACCATTTCTTTAATGTCATCCCAAGCGAGCCTTGATACA  479

Query  559  ACC-TGGTTTTATGAGTT  575
            | | ||||||||||||||
Sbjct  480  AACATGGTTTTATGAGTT  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23026241868


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5