BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08330.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940295 jgi|Araly1|940295|scaffold_600839.1 1249 0.0
Ahg489189 jgi|Araly1|489189|fgenesh2_kg.6__2323__AT5G23280.1 152 5e-36
> Ahg940295 jgi|Araly1|940295|scaffold_600839.1
Length=764
Score = 1249 bits (676), Expect = 0.0
Identities = 735/763 (96%), Gaps = 6/763 (1%)
Strand=Plus/Plus
Query 66 ATAACGAAATCCTAATTCCATGGCCGACAACGACGGAGCAGTGAGTAACGGCATCATAGT 125
|||||| || ||||||||||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct 3 ATAACG-AACCCTAATTCCATGGCCAACAACGACGGAGCAGTGACTAACGGCGTCATAAT 61
Query 126 CGAGCAGACGTCAAACAAAGGACCTCTTAACGCCGTTAAGAAACCACCGTCTAAAGATCG 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CGAGCAGACGTCAAACAAAGGACCTCTTAACGCCGTTAAGAAACCACCGTCTAAAGATCG 121
Query 186 ACACAGCAAAGTTGACGGAAGAGGAAGAAGGATTCGTATGCCAATCATTTGCGCAGCTCG 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ACACAGCAAAGTTGACGGAAGAGGAAGAAGGATTCGTATGCCAATCATTTGCGCAGCTCG 181
Query 246 AGTTTTTCAATTGACCAGAGAGTTAGGTCACAAGTCCGATGGTCAAACCATAGAGTGGCT 305
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGTTTTCCAATTGACCAGAGAGTTAGGTCACAAGTCCGATGGTCAAACCATAGAGTGGCT 241
Query 306 TCTCCGTCAAGCTGAGCCTTCTATCATAGCCGCCACTGGAACTGGCACTACTCCGGCGAG 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 242 TCTCCGTCAAGCTGAGCCTTCTATCATAGCCGCCACTGGAACTGGCACTACTCCGGCAAG 301
Query 366 TTTCTCCACTGCTTCTCTCTCCACTTCTTCTCCGTTTACTCTCGGGAAACGTGTCGTCAG 425
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 302 TTTCTCCACTGCTTCTCTTTCCACTTCTTCTCCGTTTACACTCGGAAAACGTGTCTTCAG 361
Query 426 AGCGGAGGAAGGAGAATCCGGCGGCGGAGG---AGGAGGAGGGTTAACAGTGGGACACAC 482
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 362 AGCGGAGGAAGGAGAATCCGGCGGCGGCGGCGGAGGAGGAGGGTTAACAGTGGGACACAC 421
Query 483 AATGGGGACTTCGTTAATGGGTGGTGGTGGTTCTGGTGGGTTTTGGGCTGTTCCGGCGAG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AATGGGGACTTCGTTAATGGGTGGTGGTGGTTCTGGTGGGTTTTGGGCTGTTCCGGCGAG 481
Query 543 GCCGGATTTCGGACAAGTCTGGAGCTTTGCAACCGGAGCTCCACCGGAAATGGTTTTTGC 602
||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 482 GCCTGATTTCGGACAAGTCTGGAGCTTTGCAGCCGGAGCTCCACCGGAGATGGTTTTTGC 541
Query 603 GCAGCAGCAGCAACCAGCTACACTCTTCGTCCGCCACCAGCAGCAACAGCAAGCTTCCGC 662
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 542 TCAGCAGCAGCAACCAGCTACACTCTTTGTCCGCCACCAGCAGCAACAGCAAGCTTCCGC 601
Query 663 CGCCGCAGCAGCTGCAATGGGTGAGGCTTCAGCAGCTAGAGTTGGGAATTATCTTCCGGG 722
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CGCCGCAGCCGCTGCAATGGGTGAGGCTTCAGCAGCTAGAGTTGGGAATTATCTTCCGGG 661
Query 723 TCATCATCTCAATTTGCTTGCTTCTTTGTCTGGTGGAGCTAACGGGTCGGGTCGGAGGGA 782
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CCATCATCTCAATTTGCTTGCTTCTTTGTCTGGTGGAGCTAACGGGTCGGGTCGGAGGGA 721
Query 783 AGACGACCACGAACCACGTTGAGAAAT--GGTATTGTCTTTTT 823
|||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 722 AGACGACCACGACCCACGTTGAGAAAAAAGGTTTTGTCTTTTT 764
> Ahg489189 jgi|Araly1|489189|fgenesh2_kg.6__2323__AT5G23280.1
Length=1250
Score = 152 bits (82), Expect = 5e-36
Identities = 217/277 (78%), Gaps = 30/277 (11%)
Strand=Plus/Plus
Query 519 TGGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTCGGACAAGTCTGGAGCTTTGCAACCGG 578
||||||||||||||||||||||||||||||||| |||||||| ||||| ||| || ||
Sbjct 498 TGGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAG-TTT--TACAGG 554
Query 579 AGCTCCACCGGAAATGGTTTTTGC-GCAGCAGCAGCAACCAGCTACACTCTTCGTCCGCC 637
|||||||| || || |||||| | ||||| || ||| || | || | || || |
Sbjct 555 AGCTCCACAAGAGAT-GTTTTTACAACAGCATCATCAA-CAAC--CATTGTTTGT---TC 607
Query 638 ACCAGCAGCAACAGCAAGCTTCCGCCGCCGCAGCAGCTGCAATGGGTGAGGCTTCAGCAG 697
| ||||||||||| ||| || ||||||||||||||| ||||| || |
Sbjct 608 ATCAGCAGCAACAACAA-------------CA--AGCTGCAATGGGTGAAGCTTCTGCTG 652
Query 698 CTAGAGTTGGGAATTATCTTCCGGGTCATCATCTCAATTTGCTTGCTTCTTTGTCTGGTG 757
|||||||||||||||||||||||||||||| | | ||||||||||||||||| || ||||
Sbjct 653 CTAGAGTTGGGAATTATCTTCCGGGTCATC-T-T-AATTTGCTTGCTTCTTTATCCGGTG 709
Query 758 GAGCTAACGGGTCGGGTCGGAGGGAAGACGA-CCACG 793
|| || |||||||||||| || || || || |||||
Sbjct 710 GATCTCCCGGGTCGGGTCGAAGAGAGGAAGATCCACG 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5