BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08335.1
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487666 jgi|Araly1|487666|fgenesh2_kg.6__800__AT5G08335.1 1382 0.0
> Ahg487666 jgi|Araly1|487666|fgenesh2_kg.6__800__AT5G08335.1
Length=922
Score = 1382 bits (748), Expect = 0.0
Identities = 828/867 (96%), Gaps = 3/867 (0%)
Strand=Plus/Plus
Query 105 TTTACAAAAGTAATTCCTTGATTATAGCAAGCAAAGAATAAAGGGTAAAGGTGTAGACTT 164
||| ||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||
Sbjct 58 TTT-CAAAAGTAATTCCGTCACTATAGCAAGCAAAGAATAAAGGGTAAAGGTGTAAACTT 116
Query 165 TGCTTCTCTCCTTCAAAGTCCACGCGATTCTCACTGTCAGCCTCTGCGAAATTTCCAGTC 224
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 117 TGCTTCTCTCCTCCAAAGTCCACGCGATTCTCACTGCCAGCCTCTGTGAAATTTCCAGAC 176
Query 225 TTTCTCGCATTTTCCCTCGTAGCAGCCGTCAATTTCAACTGGGTCTAAGTAATCTTGTGA 284
||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||||
Sbjct 177 TTTCTCGCATTTTCCCTCGTATCAGCCGTCAATTTCAAGTGGGGCTGAGTAATCTTGTGA 236
Query 285 AGACTCAATGACAGAGATATTTAGTGACACCGGGTTCAGACAGTTAACTCAAATGTTCCT 344
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGAATCAATGACAGAGATATTTAGTGACACCGGGTTCAGACAGTTAACTCAAATGTTCCT 296
Query 345 GGCGATAATCTTCTTCCACACATCGGAGTACATTCTCGCCATAGCCATTCACGGAGCATC 404
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 297 GGCGATAATCTTCTTCCACACATCGGAATACATTCTCGCCGTAGCCATTCATGGAGCATC 356
Query 405 GAAAGTAACTTTAAGCTCACTCTTAATCAGCAAACACTATGCTTTAGCAATGCTAATATC 464
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 GAGAGTAACTTTAAGCTCACTCTTAATCAGCAAACACTATGCTTTAGCAATGCTAATCTC 416
Query 465 AGTCCTCGAGTACATAGCCGAGATTGTTTTCTTCCCGGGGCTGAAACAACACTGGTGGAT 524
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGTCCTCGAGTACATAACCGAGATTGTTTTCTTCCCGGGGCTGAAACAACACTGGTGGAT 476
Query 525 CAGCAATTTCGGTCTTACAATGATCATACTTGGAGAAATCCTTCGCAAAACCGCGATAAT 584
||||||||||||||||| |||||||||||||||||||||| | || |||| |||||||||
Sbjct 477 CAGCAATTTCGGTCTTATAATGATCATACTTGGAGAAATCATCCGAAAAATCGCGATAAT 536
Query 585 CACAGCAGGTAGATCGTTCACACACCTTATAAAAATTCGCCGGGAGGAGCATCATAAGCT 644
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 537 CACAGCAGGTAGATCGTTCACACACCTTATAAAGATTCGCCGGGAGGAGCATCATAGGCT 596
Query 645 TGTGACAGAAGGAGTGTATCAAATCATGAGGCATCCGAGTTACTCCGGGTTTCTCATTTG 704
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGTGACGGAAGGAGTGTATCAAATCATGAGGCATCCGAGTTACTCCGGGTTTCTCATTTG 656
Query 705 GTCTGTGGGAACGCAAGTAATGCTCTGTAATCCAATTTCAG-CGATTGCGTTTGCGGTTG 763
|||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct 657 GTCTGTGGGAACCCAAGTAATGCTGTGTAATCCAATTTCAGCCG-TTGCGTTTGCGGTTG 715
Query 764 TGGTGTGGCGGTTCTTTGCAGAGAGAATACCTTATGAGGAGCATTACTTGAAGCAATTTT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGGTGTGGCGGTTCTTTGCAGAGAGAATACCTTATGAGGAGCATTACTTGAAGCAATTTT 775
Query 824 TTGGGAGACAGTATGTGGAGTATGCGCAGAGAGTTCCTTCTGGTGTTCCTTTTGTAAACT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTGGGAGACAGTATGTGGAGTATGCGCAGAGAGTTCCTTCTGGTGTTCCTTTTGTAAACT 835
Query 884 GATCCTTAGATCAATTGTGAACATATACGAGCATTGTTTGATTACCTTTTACATAGAAAA 943
||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||
Sbjct 836 GATCCTTAGATCAATTGTGAACATATACGAGAATGGTTTAATTACTTTTTACATAGAAAG 895
Query 944 TTATGAAAGAGATGTTGTTACTCATGT 970
||||||||||||| |||||||||||||
Sbjct 896 TTATGAAAGAGATATTGTTACTCATGT 922
Score = 100 bits (54), Expect = 2e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 3 TCCTGCAACGTTTCTTCTCATCGATTTTGACCGGAAGCTCCTTGATTCAAACAAGACTTT 62
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1 TCCTGCAACGTTTCTTCTCATCGATTTTGACCGGAAGCTCCATGAATCAAACAAGACTTT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36864860739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5