BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08340.1
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487667 jgi|Araly1|487667|fgenesh2_kg.6__801__AT5G08340.1 1882 0.0
Ahg489194 jgi|Araly1|489194|fgenesh2_kg.6__2328__AT5G23330.1 579 2e-164
> Ahg487667 jgi|Araly1|487667|fgenesh2_kg.6__801__AT5G08340.1
Length=1205
Score = 1882 bits (1019), Expect = 0.0
Identities = 1145/1206 (95%), Gaps = 8/1206 (1%)
Strand=Plus/Plus
Query 7 GCTCCGGCGAAGAGTCT-C---TCCGTGAGAGCGAGCTTGTCCGATTTGTAAGCACGAGA 62
||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 1 GCTCCGGCGAAGAGTCTCCGTGTCCGTGAGAGCGAGCTTGTCCGATTTGTAATCACGAGA 60
Query 63 CGGAACCATGTTGTGCGGAGGCTCACGTGTCTTGCAGCATTTGTCCGACCACAATCATCA 122
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AGGAACCATGTTGTGCGGAGGCTCACGTGTCTTGCAGCATTTGTCGGACCACAATCATCA 120
Query 123 TAATTCGATTGGTTTAGGATTAGGGTTTTGTGGTGCTAAGATTGTGCAGCTCTCTTCATT 182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACTTCGATTGGTTTAGGATTAGGGTTTTGTGGTGCTAAGATTGTGCAGCTCTCTTCATT 180
Query 183 CTTTCTCAGGCCTTCTCAGGCTATGGCGAAGAGTCATCATTTCAGCCGTAAATTGCGTCA 242
|||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| |||
Sbjct 181 CTTTCTCAGGCCTTGTCAGGTTATGGCGAACAGTCATCATTTCAGCCATAAATTGCATCA 240
Query 243 GCGGATGATTTCTTCATTTGGGTCTCATTGCAGAACAT-CCGGAGAAGTCCCAATTCTTC 301
|||||||||||||||||||||| ||||||||||||| | |||||||| |||| |||||||
Sbjct 241 GCGGATGATTTCTTCATTTGGGCCTCATTGCAGAAC-TCCCGGAGAAATCCCTATTCTTC 299
Query 302 ACAATTGTTTCAGCCAACGAGAAGATGATCCTGAGCTTCCAGTTGAAGGGTTATCTCCAG 361
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 300 ACAATTGTTTCAGCCAACGAGAAGATGATACTGAGCTTCCAGTTGAAGGATTATCCCCAG 359
Query 362 TGTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCATCGAGAGC 421
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCATCGAGAGC 419
Query 422 TTACAATTCAAGCTTCAAGAATTGGAGCTCCATATCTATTATCTTTTGTTGGAATGGCCG 481
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 420 TAACAATTCAAGCTTCAAGAATTGGAACTCCATATCTATTATCTTTCGTTGGAATGGCCG 479
Query 482 AGGTACTTGGTTGGGAGCCCAGGGCACCTATAGTGGCCAAATGTGATCGACAAAGGGTGC 541
||||||||||||||||||| ||||| || |||||||| |||||||||||| |||||||||
Sbjct 480 AGGTACTTGGTTGGGAGCCTAGGGCTCCAATAGTGGCTAAATGTGATCGAAAAAGGGTGC 539
Query 542 TTACCTCTTGGGCCTCATATTGTGGAGACAGAGCGCCTGAAGAGTATGAGATAGAATTTG 601
|||||||||||||||||||||||||||||||||| || |||||| | |||||||||||||
Sbjct 540 TTACCTCTTGGGCCTCATATTGTGGAGACAGAGCACCGGAAGAGCACGAGATAGAATTTG 599
Query 602 CCAGCGTGCGACATCTTACCCCACGACAGTTTGTGGAGAAGCTGTCAAAGGAGCTCAGAG 661
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 CCAGCGTGCGACATCTTACCCCACAACAGTTTGTGGAGAAGCTGTCAAAGGAGCTCAGAG 659
Query 662 TCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTCTGGTGATGCCT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTCTGGTGATGCCT 719
Query 722 CTGAGCTAGTGAGACTGTGCGAGGAATGTGGTATCACTGCTTGCATCATAAACTCTGTGA 781
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 720 CTGAGCTAGTGAGACTGTGCGAGGAATATGGTATCACTGCTTACATCATAAACTCTGTGA 779
Query 782 TGGACATGAAGCAAGGCTCAGCAAAGAGAGACTCAGGGGACTCAAAAGATAGAGGGCAAG 841
|||||| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 780 TGGACAAGAAACAAGGCTCAGGAAAGAGAGACTCAGGGGACTCAAAAGACAGAGGGCAAG 839
Query 842 TCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGATATGAGGTACGTATCAGAGC 901
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 TCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGATATGAAGTACGTATCAGAGC 899
Query 902 TCCTTGGCAGGGCACATCGTCTTATCTTGAGAGTCAGAACCCAAGATATGCCAAGTGAAA 961
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 900 TCCTTGGCAGGGCACATCGGCTTATCTTGAGAGTCAGAACCCAAGATATGCCGAGTGAAA 959
Query 962 GGATGATCTCAGTCCCGAGATCATCAATACTTAATTTGCCACCAGGGATCGGAATTTATA 1021
||||||| || |||||||||||||||||||||||||| || ||||||| ||| |||||||
Sbjct 960 GGATGATTTCTGTCCCGAGATCATCAATACTTAATTTACCGCCAGGGAACGGTATTTATA 1019
Query 1022 AGGCATGTTTGCTTCTAGTTGGTGATGAGTCTTCAGTTCCGTGTACCGTAGTTGTTGATA 1081
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct 1020 AGGCATGTTTGCTTCTAGTCGGTGATGAGTCTTCAATTCCGTGTACCGTAGTTGTTGAGA 1079
Query 1082 CATCAAATATCCATGTAGAAACAGAGGAGGTACGACTCTGTAATTTAGATTGGTCTCAAG 1141
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1080 CATCAAATATCCATGTAGAAACAAAGGAGGTACGACTCTGTAATTTAGATTGGTCTCAAG 1139
Query 1142 AATTTCGACTCGTGAGTGTTGAGTTCGGTTGAGTCAATCTTAGT-T-CGTATAAATTCAT 1199
||||| ||||| |||||||||||||||||||| ||||||||||| | | ||| |||||||
Sbjct 1140 AATTTAGACTCTTGAGTGTTGAGTTCGGTTGATTCAATCTTAGTGTTCCTATGAATTCAT 1199
Query 1200 ATTTCT 1205
||||||
Sbjct 1200 ATTTCT 1205
> Ahg489194 jgi|Araly1|489194|fgenesh2_kg.6__2328__AT5G23330.1
Length=1183
Score = 579 bits (313), Expect = 2e-164
Identities = 713/902 (79%), Gaps = 43/902 (5%)
Strand=Plus/Plus
Query 305 ATTGTTTCAGCCAACGAGAAGATGATCCTGAGCTTCCAGTTGAAGGG-TTATCTCCAG-T 362
||||||||||||| |||| ||| ||| ||||||| ||| ||||||| || || |||| |
Sbjct 245 ATTGTTTCAGCCAGGGAGATGATAATCTTGAGCTTTCAGCTGAAGGGCTT-TCCCCAGTT 303
Query 363 GTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCATCGAGAGCT 422
| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 304 G-CAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATATCGGTCATCGAGAGCT 362
Query 423 TACAATTCAAGCTTCAAGAATTGG-AGCTCCATATCTATTATCTTTTGTTGGAATGGCCG 481
| |||| |||||| |||||| ||| | ||||||||||||| || |||||||||||||| |
Sbjct 363 TGCAATCCAAGCTGCAAGAACTGGTA-CTCCATATCTATTGTCGTTTGTTGGAATGGCTG 421
Query 482 AGGTACTTGGTTGGGAGCCCAGGGCACCTATAGTGGCCAAATGTGATCGACAAA-GGGTG 540
| |||||||||||| | || || ||||| ||||| |||||||| ||| || ||| |||||
Sbjct 422 AAGTACTTGGTTGGAAACCTAGAGCACCGATAGTAGCCAAATGCGATAGA-AAACGGGTG 480
Query 541 CTTACCTCTTGGGCCTCATATTGTGG-AGACAGAGCGCCTGAAGAGTATGAGATAGAATT 599
||| |||||||||| || |||||||| | ||| ||| || | ||||| |||||| |||||
Sbjct 481 CTTTCCTCTTGGGCATCGTATTGTGGTA-ACATAGCACCGGTAGAGTTTGAGATTGAATT 539
Query 600 TGCCAGCGTGCGACATCTTACCCCAC-GACAGTTTGTGGAGAAGCTGTCAA-AGGAGCTC 657
||||||||| ||||| |||| ||||| | |||||||| |||||| |||||| || ||||
Sbjct 540 TGCCAGCGTTCGACACCTTAACCCACAG-CAGTTTGTCGAGAAGTTGTCAAGAG-AGCTT 597
Query 658 AGAGTCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTCTGGTGAT 717
||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct 598 AGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGCTTCTGGTGAC 657
Query 718 GCCTCTGAGCTAGTGAGACTGTGCGAGGAATGTGGTATCA-CTGCTTGCATCATAAACTC 776
|||||||| || ||||| | || | || | ||||||| | |||| |||||| |||||
Sbjct 658 GCCTCTGAACTTGTGAGGTTATGTAAAGAGTACGGTATCAGC-GCTTACATCATTAACTC 716
Query 777 TGTGATGGACATGAAGCAAGGCTCAGCAAAGA-GAGACTCAG-GG-G-ACTCAAA---A- 828
|||||||| | ||| |||| ||| | ||| | | ||| ||| || | ||||||| |
Sbjct 717 GGTGATGGATAAGAACCAAGTCTCTGGAAACACG-GACACAGAGGAGGACTCAAAGTCAA 775
Query 829 --GATAGAGGGCAAGTCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGATATGA 886
|| ||||| |||||||| || ||||| || || || |||||||| || |||||| |||
Sbjct 776 AAGAAAGAGGACAAGTCTCGTCCACACGAGTCCGACATGCTCTTGCTGCAGGAGATGTGA 835
Query 887 GGTACGTATCAGAGCTCCTTGGCAGGGCACATC-GTCTTATCTTGAGAGTCAGAACCCAA 945
|||| ||| | |||||||| ||||| |||| | | |||||| || || ||||| |||
Sbjct 836 GGTATGTAACTGAGCTCCTCGGCAGACCACA-CAGGGTTATCTCAAGGGTGAGAACACAA 894
Query 946 GATATGCCAAGTGAAAGGATG-ATC-TCA-G-TCCCGAGATCATCAATACTTAATTTGCC 1001
||| | |||| |||||| | | ||| | | | | ||| || |||| ||||| ||
Sbjct 895 GATTTAACAAGC-AAAGGAAGGAGGGTCACGCTTCATACATCGTCGCTACTGAATTTACC 953
Query 1002 ACCAGGGA-TCGGAATTTATAAGGCATGTTTGCTTCTAGTTGGTGATGAGTCTTC-AGTT 1059
||| || | | ||| |||| || ||||| | |||| ||||||||||| || | || | ||
Sbjct 954 ACCTGGAAAT-GGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAG-CATCCAATT 1011
Query 1060 CCGTGTACCGTAGTTGTTGATACATCAAATATCCATGTAGAAACAGAGGAGGTACGACTC 1119
|||||| ||| ||||| |||||||| ||| || || ||||||||||||| | | | ||
Sbjct 1012 TCGTGTAACGTTGTTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAATGTTTC 1071
Query 1120 TGTAATTTAGATTGGTCTCAAGAA---TTTCGACTCGTGAGTG-TTGAGTTCGGTTGAGT 1175
|| | |||| ||||||||||| |||| |||| | || | |||||||||||||| |
Sbjct 1072 CACAACTCAGATGGGTCTCAAGAAGAGTTTCTACTCTT-AGGGATTGAGTTCGGTTGATT 1130
Query 1176 CA 1177
||
Sbjct 1131 CA 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44985042060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5