BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08350.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487669 jgi|Araly1|487669|fgenesh2_kg.6__803__AT5G08350.1 1171 0.0
Ahg941862 jgi|Araly1|941862|scaffold_602406.1 571 3e-162
Ahg941861 jgi|Araly1|941861|scaffold_602405.1 425 2e-118
> Ahg487669 jgi|Araly1|487669|fgenesh2_kg.6__803__AT5G08350.1
Length=848
Score = 1171 bits (634), Expect = 0.0
Identities = 770/835 (92%), Gaps = 12/835 (1%)
Strand=Plus/Plus
Query 59 TTACTCAATCCTCTAAAGATGAACATGAGCAGAGTTGAACAACAAGTCATTAGATATCCG 118
|||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 21 TTACTCCATTCTCTAAAGATGAACATGAGCAGAGTTGACCAACAAGTCATTAGATTTCCT 80
Query 119 GCCGCAAAGGCTACTCCCG-TGGGTTACTTACCTGATCCGGCTTCATTTAACAAGTTCCG 177
|| | ||| ||||| ||| | |||||||||||||||||||| ||| |||||||||||||
Sbjct 81 GCGGGGAAGACTACT-CCGTTTGGTTACTTACCTGATCCGGCCTCAATTAACAAGTTCCG 139
Query 178 AGTTCCGGCTTCTTCCAAGAAATCTGAACAAAGCAACGTAAAATCGATTCTTAAAAGGAA 237
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 140 AGTTTCGGCTTCTTCCAAGAAATCTGAACAAAGCAACGGAAAATCGATTCTTAAAAGGAA 199
Query 238 GAAAACTGATGGGTTCACCAACGGAGTTAGAGACCAGAGCAAGATAAGACCAAAGCTAAC 297
|||||| ||||| |||||||| |||| |||||||||||||||| ||| ||||||||||||
Sbjct 200 GAAAACCGATGGTTTCACCAATGGAGCTAGAGACCAGAGCAAGCTAAAACCAAAGCTAAC 259
Query 298 CGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGAGGTTTAGA 357
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 260 TGAAACAGTGAAGAGAAAGCTATCTTTGGGCGCTAGAATTCTTCAGGTTGGAGGTTTAGA 319
Query 358 GAAGATCTTCAAGCGGCTCTTTAGAGTTAGTGAAGGTGAGAAACTGTTCAAAATGTACCA 417
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 320 GAAGATCTTCAAGCGACTTTTTAGAGTCAGTGAAGGTGAGAAACTGTTCAAAATGTACCA 379
Query 418 GTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATCTCTTCCAAGAA 477
||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct 380 GTGTTACTTGTCGACAACCGCAGGTCCTATCGCCGGCCTTCTATTCATCTCGTCCAAGAA 439
Query 478 AATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGATTCCCCTCAAGGAGACATAATCCG 537
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 440 AATGGCGTTCTGCAGCGAGCGATCGATAAAGGTGGATTCCCCTCAAGGAGACATGATCCG 499
Query 538 GGTTCACTACAAAGTATCAATCCCCTTGTGCAAGATCGACAGAGTGAACCAGAGTCAGAA 597
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GGTTCACTACAAAGTATCACTCCCCTTGTGCAAGATCGACAGAGTGAACCAGAGTCAGAA 559
Query 598 CACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATGGTTTTGACTTCTG 657
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 560 CACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGACGGTTTTGACTTCTG 619
Query 658 GTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAGAAGGCTCTTTCACT 717
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 620 GTTTATGGGATTCATGAGCTACCAGAAAGCTTTCAATTGCCTTGAGAAGGCTCTTTCTCT 679
Query 718 GAGCTTTGAAGATAACAAAGAGCAATAAAGCCGCGATTTCTGTGGAACTATGGAGTTTAA 777
|||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 680 GAGCTTTGAAGACAACAAAGAGCAATAAAGCCGCGATTTCAGAGGAGTTATGGAGTTTA- 738
Query 778 CAAGAAATATTTCATTTCTTCTTTCCTT----GATTGATCAGAAAATAGTCCTAGAAACA 833
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 739 CAAGAAATATTTCATTTCTTCTTTCCTTTCTTGATTGATCAGAAAATAGTCCTAGAAAGA 798
Query 834 CTCTATTTCTTTACTGTACAAACTCTATTTCTTTTTTCTTTTCCATTGTAGACAA 888
| | | | ||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 799 CAGAAAAT-T--ACTGTACAAACTCAAATTCTTTT--CTTTTCCATTGTAGACAA 848
> Ahg941862 jgi|Araly1|941862|scaffold_602406.1
Length=700
Score = 571 bits (309), Expect = 3e-162
Identities = 564/684 (82%), Gaps = 30/684 (4%)
Strand=Plus/Plus
Query 60 TACTCAATCCTCTAAAGATGAACA-TGAGCAGA-GTTGAACAACAAGTCATTAG-ATATC 116
|||||||||||| |||||| ||| |||||| | ||| | |||||||||||| | || ||
Sbjct 5 TACTCAATCCTC-CAAGATG-ACATTGAGCA-ATGTTCACCAACAAGTCATT-GCATTTC 60
Query 117 CGGCCG-CAAAGGCTACTCCCGTGGGTTACTTACCTGATCCGGCTT-CATTTAACAAGTT 174
| |||| | ||| || |||| ||||||||||| |||||||| |||| || | ||| || |
Sbjct 61 CTGCCGTC-AAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCA-TCAACGAGCT 118
Query 175 CCGAGTTCCGGCTTCTTCCAAGAAATC---T-GAACAAAGCAACGTAAAATCGATTCT-T 229
|| | | || ||||||| ||| || | ||| |||||| | ||||||||| ||
Sbjct 119 CCAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAAC-AAGCAAAGGAAAATCGATGCTGC 177
Query 230 AAAAGGAAGAAAACTGATGGGTTCACCAACGGAGTTAGAGACCAGAGCAAGATAAGACCA 289
||| ||||||||| ||| | ||||| ||||||| |||||| ||||||||| || |||||
Sbjct 178 GAAA-GAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGAGCAAGTTAGGACCA 236
Query 290 AAGCTAACCGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGA 349
|| ||||||||||| || |||||||||||||| ||||| |||||||| ||||| || |||
Sbjct 237 AAACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGA 296
Query 350 GGTTTAGAGAAGATCT-TCAAGCGGCTCTTT-AGAGT-TAGTGAAGGTGAGAAACTGTTC 406
|| ||||||||||||| | ||||| |||||| || || | | || | |||||||| |||
Sbjct 297 GGCTTAGAGAAGATCTAT-AAGCGACTCTTTAAG-GTCT-GCGATGAAGAGAAACTCTTC 353
Query 407 AAAATGTACCAGTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATC 466
|| | |||||| |||||||| || |||||||| |||||||| || ||||| |||||||||
Sbjct 354 AAGACGTACCAATGTTACTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATC 413
Query 467 TCTTCCAAGAAAATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGATTCCCCTCAAGGA 526
|| || ||||| || || ||||||||||||||||| |||||||||| ||| |||||||||
Sbjct 414 TCATCAAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGA 473
Query 527 GA-CAT-AATCCGGGTTCACTACAAAGTATCAATCCCCTTGTGCAAGATCGACAGAGTGA 584
|| | | | | ||||||| |||||||| |||||||| |||||||||||| | ||||||
Sbjct 474 GATC-TCACT-AGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGA 531
Query 585 ACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATG 644
|||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |
Sbjct 532 ACCAGAGTCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACG 591
Query 645 GTTTTGACTTCTGGTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAG- 703
| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct 592 GCTTTGACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGC 651
Query 704 AAGGCTCTTTCACTGAGCTTTGAA 727
||| | ||||| || ||||| |||
Sbjct 652 AAG-CGCTTTCTCTTAGCTTCGAA 674
> Ahg941861 jgi|Araly1|941861|scaffold_602405.1
Length=698
Score = 425 bits (230), Expect = 2e-118
Identities = 524/663 (79%), Gaps = 31/663 (5%)
Strand=Plus/Plus
Query 61 ACTCAATCCTCTAAAGATGAACA-TGAGCAGAGTTGAACAACAAGTCATTAG-ATATCC- 117
|||||| |||| |||||| ||| |||| ||||| | |||||||||||| | || |||
Sbjct 6 ACTCAACCCTC-CAAGATG-ACATTGAGTGGAGTTCACCAACAAGTCATT-GCATTTCCT 62
Query 118 GGCCGCAAAGGCTACTCCCGTGGGTTACTTACCTGATCCGGCTT-CATTTAACAAGTTCC 176
| || | || || |||| | ||||||| |||||||| |||| || | |||||| |||
Sbjct 63 GCCCTC-AATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCA-TCAACAAGCTCC 120
Query 177 GAGTTCCGGCTTCTTCCAAGAAATC-TGA--A-CAAAGCAACGTAAAATCGAT-TCTTAA 231
| | || ||||||| ||| || | | | | | |||| | ||||||||| | |
Sbjct 121 AAATCCCAACTTCTTCAAAGTTTTCTTTATTATC-AGGCAAAGGAAAATCGATGGCGCGA 179
Query 232 AAGGAAGAAAACTGATGGGTTCACCAACGGAGTTAGAGACCA-GAGCAAGATAAGACCAA 290
|| ||||||||||||| | ||||| ||||||| |||||| || || |||| || ||||||
Sbjct 180 AA-GAAGAAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAGTTAGGACCAA 237
Query 291 AGCTAACCGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGAG 350
|| |||| ||||| || |||||||||||||| ||||| |||| ||| ||||| | ||||
Sbjct 238 AGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 297
Query 351 GTTTAGAGAAGATCTT-CAAGCGGCTCTT-TAGAGT-TAGTGAAGGTGAGAAACTGTTCA 407
| |||||||||| || ||||| ||||| || || | | || |||||||| ||||
Sbjct 298 GCCTAGAGAAGAT-TTATAAGCGACTCTTCAAG-GTCT-GCGATCAAGAGAAACTCTTCA 354
Query 408 AAATGTACCAGTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATCT 467
| |||||| |||||| | |||||||||| ||| |||| || ||||| ||||||||||
Sbjct 355 AGGCGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCT 414
Query 468 CTTCCAAGAAAATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGA-TTCCCCTCAAGGA 526
| || ||||| || || ||||||||||| ||||| || ||||| || ||| ||||| |||
Sbjct 415 CATCAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGT-GACTTCTCCTCAGGGA 473
Query 527 GA-CATAATCCGGGTTCACTACAAAGTATCAATCCC-CTTGTGCAAGATCGACAGAGTGA 584
|| | || | |||||||||||||||| |||||||| | ||||||||||| | ||||||
Sbjct 474 GATCTTACT-AGGGTTCACTACAAAGTCTCAATCCCGC-TGTGCAAGATCAATGGAGTGA 531
Query 585 ACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATG 644
|||||||||||||||||||||| | ||| || |||||||| ||||| ||||||||||| |
Sbjct 532 ACCAGAGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACG 591
Query 645 GTTTTGACTTCTGGTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAG- 703
| |||||||||||||||||||| ||| |||||||||| |||||||||||||| || |||
Sbjct 592 GCTTTGACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGC 651
Query 704 AAG 706
|||
Sbjct 652 AAG 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5