BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08350.1 Length=917 Score E Sequences producing significant alignments: (Bits) Value Ahg487669 jgi|Araly1|487669|fgenesh2_kg.6__803__AT5G08350.1 1171 0.0 Ahg941862 jgi|Araly1|941862|scaffold_602406.1 571 3e-162 Ahg941861 jgi|Araly1|941861|scaffold_602405.1 425 2e-118 > Ahg487669 jgi|Araly1|487669|fgenesh2_kg.6__803__AT5G08350.1 Length=848 Score = 1171 bits (634), Expect = 0.0 Identities = 770/835 (92%), Gaps = 12/835 (1%) Strand=Plus/Plus Query 59 TTACTCAATCCTCTAAAGATGAACATGAGCAGAGTTGAACAACAAGTCATTAGATATCCG 118 |||||| || |||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 21 TTACTCCATTCTCTAAAGATGAACATGAGCAGAGTTGACCAACAAGTCATTAGATTTCCT 80 Query 119 GCCGCAAAGGCTACTCCCG-TGGGTTACTTACCTGATCCGGCTTCATTTAACAAGTTCCG 177 || | ||| ||||| ||| | |||||||||||||||||||| ||| ||||||||||||| Sbjct 81 GCGGGGAAGACTACT-CCGTTTGGTTACTTACCTGATCCGGCCTCAATTAACAAGTTCCG 139 Query 178 AGTTCCGGCTTCTTCCAAGAAATCTGAACAAAGCAACGTAAAATCGATTCTTAAAAGGAA 237 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 140 AGTTTCGGCTTCTTCCAAGAAATCTGAACAAAGCAACGGAAAATCGATTCTTAAAAGGAA 199 Query 238 GAAAACTGATGGGTTCACCAACGGAGTTAGAGACCAGAGCAAGATAAGACCAAAGCTAAC 297 |||||| ||||| |||||||| |||| |||||||||||||||| ||| |||||||||||| Sbjct 200 GAAAACCGATGGTTTCACCAATGGAGCTAGAGACCAGAGCAAGCTAAAACCAAAGCTAAC 259 Query 298 CGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGAGGTTTAGA 357 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 260 TGAAACAGTGAAGAGAAAGCTATCTTTGGGCGCTAGAATTCTTCAGGTTGGAGGTTTAGA 319 Query 358 GAAGATCTTCAAGCGGCTCTTTAGAGTTAGTGAAGGTGAGAAACTGTTCAAAATGTACCA 417 ||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct 320 GAAGATCTTCAAGCGACTTTTTAGAGTCAGTGAAGGTGAGAAACTGTTCAAAATGTACCA 379 Query 418 GTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATCTCTTCCAAGAA 477 ||||||||||||||||||||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 380 GTGTTACTTGTCGACAACCGCAGGTCCTATCGCCGGCCTTCTATTCATCTCGTCCAAGAA 439 Query 478 AATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGATTCCCCTCAAGGAGACATAATCCG 537 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| Sbjct 440 AATGGCGTTCTGCAGCGAGCGATCGATAAAGGTGGATTCCCCTCAAGGAGACATGATCCG 499 Query 538 GGTTCACTACAAAGTATCAATCCCCTTGTGCAAGATCGACAGAGTGAACCAGAGTCAGAA 597 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 500 GGTTCACTACAAAGTATCACTCCCCTTGTGCAAGATCGACAGAGTGAACCAGAGTCAGAA 559 Query 598 CACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATGGTTTTGACTTCTG 657 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 560 CACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGACGGTTTTGACTTCTG 619 Query 658 GTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAGAAGGCTCTTTCACT 717 ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 620 GTTTATGGGATTCATGAGCTACCAGAAAGCTTTCAATTGCCTTGAGAAGGCTCTTTCTCT 679 Query 718 GAGCTTTGAAGATAACAAAGAGCAATAAAGCCGCGATTTCTGTGGAACTATGGAGTTTAA 777 |||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||| Sbjct 680 GAGCTTTGAAGACAACAAAGAGCAATAAAGCCGCGATTTCAGAGGAGTTATGGAGTTTA- 738 Query 778 CAAGAAATATTTCATTTCTTCTTTCCTT----GATTGATCAGAAAATAGTCCTAGAAACA 833 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 739 CAAGAAATATTTCATTTCTTCTTTCCTTTCTTGATTGATCAGAAAATAGTCCTAGAAAGA 798 Query 834 CTCTATTTCTTTACTGTACAAACTCTATTTCTTTTTTCTTTTCCATTGTAGACAA 888 | | | | ||||||||||||| | ||||||| |||||||||||||||||| Sbjct 799 CAGAAAAT-T--ACTGTACAAACTCAAATTCTTTT--CTTTTCCATTGTAGACAA 848 > Ahg941862 jgi|Araly1|941862|scaffold_602406.1 Length=700 Score = 571 bits (309), Expect = 3e-162 Identities = 564/684 (82%), Gaps = 30/684 (4%) Strand=Plus/Plus Query 60 TACTCAATCCTCTAAAGATGAACA-TGAGCAGA-GTTGAACAACAAGTCATTAG-ATATC 116 |||||||||||| |||||| ||| |||||| | ||| | |||||||||||| | || || Sbjct 5 TACTCAATCCTC-CAAGATG-ACATTGAGCA-ATGTTCACCAACAAGTCATT-GCATTTC 60 Query 117 CGGCCG-CAAAGGCTACTCCCGTGGGTTACTTACCTGATCCGGCTT-CATTTAACAAGTT 174 | |||| | ||| || |||| ||||||||||| |||||||| |||| || | ||| || | Sbjct 61 CTGCCGTC-AAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCA-TCAACGAGCT 118 Query 175 CCGAGTTCCGGCTTCTTCCAAGAAATC---T-GAACAAAGCAACGTAAAATCGATTCT-T 229 || | | || ||||||| ||| || | ||| |||||| | ||||||||| || Sbjct 119 CCAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAAC-AAGCAAAGGAAAATCGATGCTGC 177 Query 230 AAAAGGAAGAAAACTGATGGGTTCACCAACGGAGTTAGAGACCAGAGCAAGATAAGACCA 289 ||| ||||||||| ||| | ||||| ||||||| |||||| ||||||||| || ||||| Sbjct 178 GAAA-GAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGAGCAAGTTAGGACCA 236 Query 290 AAGCTAACCGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGA 349 || ||||||||||| || |||||||||||||| ||||| |||||||| ||||| || ||| Sbjct 237 AAACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGA 296 Query 350 GGTTTAGAGAAGATCT-TCAAGCGGCTCTTT-AGAGT-TAGTGAAGGTGAGAAACTGTTC 406 || ||||||||||||| | ||||| |||||| || || | | || | |||||||| ||| Sbjct 297 GGCTTAGAGAAGATCTAT-AAGCGACTCTTTAAG-GTCT-GCGATGAAGAGAAACTCTTC 353 Query 407 AAAATGTACCAGTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATC 466 || | |||||| |||||||| || |||||||| |||||||| || ||||| ||||||||| Sbjct 354 AAGACGTACCAATGTTACTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATC 413 Query 467 TCTTCCAAGAAAATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGATTCCCCTCAAGGA 526 || || ||||| || || ||||||||||||||||| |||||||||| ||| ||||||||| Sbjct 414 TCATCAAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGA 473 Query 527 GA-CAT-AATCCGGGTTCACTACAAAGTATCAATCCCCTTGTGCAAGATCGACAGAGTGA 584 || | | | | ||||||| |||||||| |||||||| |||||||||||| | |||||| Sbjct 474 GATC-TCACT-AGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGA 531 Query 585 ACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATG 644 |||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 532 ACCAGAGTCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACG 591 Query 645 GTTTTGACTTCTGGTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAG- 703 | |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||| Sbjct 592 GCTTTGACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGC 651 Query 704 AAGGCTCTTTCACTGAGCTTTGAA 727 ||| | ||||| || ||||| ||| Sbjct 652 AAG-CGCTTTCTCTTAGCTTCGAA 674 > Ahg941861 jgi|Araly1|941861|scaffold_602405.1 Length=698 Score = 425 bits (230), Expect = 2e-118 Identities = 524/663 (79%), Gaps = 31/663 (5%) Strand=Plus/Plus Query 61 ACTCAATCCTCTAAAGATGAACA-TGAGCAGAGTTGAACAACAAGTCATTAG-ATATCC- 117 |||||| |||| |||||| ||| |||| ||||| | |||||||||||| | || ||| Sbjct 6 ACTCAACCCTC-CAAGATG-ACATTGAGTGGAGTTCACCAACAAGTCATT-GCATTTCCT 62 Query 118 GGCCGCAAAGGCTACTCCCGTGGGTTACTTACCTGATCCGGCTT-CATTTAACAAGTTCC 176 | || | || || |||| | ||||||| |||||||| |||| || | |||||| ||| Sbjct 63 GCCCTC-AATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCA-TCAACAAGCTCC 120 Query 177 GAGTTCCGGCTTCTTCCAAGAAATC-TGA--A-CAAAGCAACGTAAAATCGAT-TCTTAA 231 | | || ||||||| ||| || | | | | | |||| | ||||||||| | | Sbjct 121 AAATCCCAACTTCTTCAAAGTTTTCTTTATTATC-AGGCAAAGGAAAATCGATGGCGCGA 179 Query 232 AAGGAAGAAAACTGATGGGTTCACCAACGGAGTTAGAGACCA-GAGCAAGATAAGACCAA 290 || ||||||||||||| | ||||| ||||||| |||||| || || |||| || |||||| Sbjct 180 AA-GAAGAAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAGTTAGGACCAA 237 Query 291 AGCTAACCGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGAG 350 || |||| ||||| || |||||||||||||| ||||| |||| ||| ||||| | |||| Sbjct 238 AGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 297 Query 351 GTTTAGAGAAGATCTT-CAAGCGGCTCTT-TAGAGT-TAGTGAAGGTGAGAAACTGTTCA 407 | |||||||||| || ||||| ||||| || || | | || |||||||| |||| Sbjct 298 GCCTAGAGAAGAT-TTATAAGCGACTCTTCAAG-GTCT-GCGATCAAGAGAAACTCTTCA 354 Query 408 AAATGTACCAGTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATCT 467 | |||||| |||||| | |||||||||| ||| |||| || ||||| |||||||||| Sbjct 355 AGGCGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCT 414 Query 468 CTTCCAAGAAAATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGA-TTCCCCTCAAGGA 526 | || ||||| || || ||||||||||| ||||| || ||||| || ||| ||||| ||| Sbjct 415 CATCAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGT-GACTTCTCCTCAGGGA 473 Query 527 GA-CATAATCCGGGTTCACTACAAAGTATCAATCCC-CTTGTGCAAGATCGACAGAGTGA 584 || | || | |||||||||||||||| |||||||| | ||||||||||| | |||||| Sbjct 474 GATCTTACT-AGGGTTCACTACAAAGTCTCAATCCCGC-TGTGCAAGATCAATGGAGTGA 531 Query 585 ACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATG 644 |||||||||||||||||||||| | ||| || |||||||| ||||| ||||||||||| | Sbjct 532 ACCAGAGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACG 591 Query 645 GTTTTGACTTCTGGTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAG- 703 | |||||||||||||||||||| ||| |||||||||| |||||||||||||| || ||| Sbjct 592 GCTTTGACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGC 651 Query 704 AAG 706 ||| Sbjct 652 AAG 654 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34005641964 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5