BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08360.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350085 jgi|Araly1|350085|fgenesh1_pg.C_scaffold_6000678 712 0.0
> Ahg350085 jgi|Araly1|350085|fgenesh1_pg.C_scaffold_6000678
Length=879
Score = 712 bits (385), Expect = 0.0
Identities = 514/573 (90%), Gaps = 21/573 (4%)
Strand=Plus/Plus
Query 3 TCAGTATTATGCTCCCACCCTCTCCGCCATGCAAATCTTCACCAAGAAACCCTTCCTCGA 62
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 291 TCAGTATTATGCTCCCACCCTCTCCGCCATCCAAATCTTCACCAAGAAACCCTTCGTTGA 350
Query 63 CGATGGA------------TCTTCTTCTTCATCAAGGAGCTTTGGTGAGGACTGCCATCT 110
|||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 351 TGATGGATCTTCTTCTTCTTCTTCTTCTTCTTCAAGGAGCTTTGGTGAGGACTGTCATCT 410
Query 111 CTATTTTGAATACAATGAGACAGTGAG-TGTAGATG-GGCTTAGGCTTCCTCTTACTATG 168
||||||||||||||||||||| |||| | |||| | ||| ||||| |||||||||||||
Sbjct 411 TTATTTTGAATACAATGAGACAATGAGCT-TAGAGGCGGC-TAGGCCTCCTCTTACTATG 468
Query 169 ATGGTTGAGGAACTAGCTAAGAAGCACCATGGATTGAATACTCTTAGAACCTCTGATCTG 228
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ATGTTTGAGGAACTGGCTAAGAAGCACCATGGATTGAATACTCTTAGAACCTCTGATCTG 528
Query 229 TCTGAAAACAGCTGGTTTTCTATAACTTGGTCTCCGGCAACTCAAATTCCATCGAG-GCA 287
||||||||||| |||||||||||||||||||||| || || |||||||||| || | | |
Sbjct 529 TCTGAAAACAGTTGGTTTTCTATAACTTGGTCTCGGGGAATTCAAATTCCAGCG-GTGAA 587
Query 288 AACACTGAATCAGTATTTCCTAACATATCATTCATTGACACCCGTTATTCCAGAAACAAT 347
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 588 AACCCTGAATCAGTATTTCCTAACATATCATTCATTGACACCCGTTATTCCAGAAACTAT 647
Query 348 TCCTAAAGGGACAGAAGTTGAGCTTCCTGCTTTTGGAGTTCTGACTACCAAGCTCTCTGG 407
||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 648 TCCTAAAAAGACAAAAGTTGAGCTTCCTGCTTTTGGAGTTCTGACTACCAAGCTA---GA 704
Query 408 CGAAGTTTGGAACATGCCAGGGACCTCAGATCAAGAGATCATAAACAGGCATGAGGAGGC 467
| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 705 CAAAGTTTGGATCATGCCTGGGACCTCAGATCAAGAGATCATAAACAGGCTTGAAGAGTC 764
Query 468 TGCTGCCTCCTGGCTGGGAAAACTCATGTTCAGCCACAATGATTTCGACTTGTTTATGGC 527
||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 765 TGCTGCCTCCTGGATGGGAAAACGCATGTTCAGCCACAGCGATTTCGACATGTTTATGGC 824
Query 528 TGAGAAACCTAAGGACCTGCCATTTTCAAGTGG 560
||||||| ||||||||||||||||||| |||||
Sbjct 825 TGAGAAATCTAAGGACCTGCCATTTTCTAGTGG 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5