BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08370.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487670 jgi|Araly1|487670|fgenesh2_kg.6__804__AT5G08370.1 1973 0.0
> Ahg487670 jgi|Araly1|487670|fgenesh2_kg.6__804__AT5G08370.1
Length=1438
Score = 1973 bits (1068), Expect = 0.0
Identities = 1239/1320 (94%), Gaps = 17/1320 (1%)
Strand=Plus/Plus
Query 18 TTTTGATTTTTCTTGAA-C-ctctctctctctc--AATCTGTTTATAGCCATTGAAGG-A 72
||||||||||||||||| | ||||||||||||| | || || ||||||||||||||| |
Sbjct 1 TTTTGATTTTTCTTGAATCTCTCTCTCTCTCTCTGAGTCAGTGTATAGCCATTGAAGGAA 60
Query 73 A--ACAAGAAAAAAGCTTGATCAAGCAATGGTTCTTCTTAGTTTCTCCTTAAGATTCATT 130
| | || |||||||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 61 ATTAAAAAAAAAAAGCTTGATCAAGCAATGGTTCTTATTGGTTTCTTCTTAAGATTCATT 120
Query 131 GCGTTCACTCTGACTATAACTCTGACTCAGATTGCTGATGGGTTTCAGAGTCGAATGTTG 190
| |||||||||||| | ||||||| || | | |||||||||||||||||||||||||
Sbjct 121 ACCTTCACTCTGACTCTGACTCTGA-TC-G--T--TGATGGGTTTCAGAGTCGAATGTTG 174
Query 191 ATGAACAATGGACTTGCTCTCTCTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG 250
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATGCACAATGGACTTGCTCTCTCTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG 234
Query 251 TGTAATATCAATGAAACCCTTATCAAACAAACCGCTGATGCAATGGTTTCAAGTGGTCTT 310
||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 235 TGTAACATCAATGAGACCCTCATCAAACAAACCGCTGATGCAATGGTTTCTAGTGGTCTT 294
Query 311 TCTGCAATAGGTTACAAGTATATCAACATAGATGATTGTTGGGGTGAACTCAAGAGAGAT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTGCAATAGGTTACAAGTATATCAACATAGATGATTGTTGGGGTGAACTCAAGAGAGAT 354
Query 371 TCTCAGGGGAGTTTGGTTGCAAAAGCATCAACATTTCCTTCAGGAATCAAAGCTTTATCA 430
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 355 TCTCAGGGGAGTTTGGTTGCGAAAGCATCGACATTTCCTTCAGGAATCAAGGCTTTATCA 414
Query 431 GATTATGTTCATAGCAAAGGGCTAAAACTTGGGATATACTCTGATGCCGGGACTCTTACC 490
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 415 GATTATGTTCATAGCAAAGGGCTAAAGCTTGGGATATACTCTGATGCCGGGACTCTTACC 474
Query 491 TGCAGCCAAACCATGCCGGGATCACTCGGGCATGAAGAACAAGATGCCAAGACATTTGCC 550
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 475 TGCAGCCAAACCATGCCGGGCTCACTCGGGCATGAAGAACAAGATGCCAAAACATTTGCC 534
Query 551 TCATGGGGGATTGATTACCTCAAGTATGATAACTGCGAAAATACAGGGACAAGTCCAAGA 610
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 535 TCATGGGGGATTGATTACCTGAAGTATGATAACTGCGAAAATACTGGGACAAGTCCAAGA 594
Query 611 GAAAGATACCCTAAGATGAGTAAAGCGCTGTTAAATTCAGGAAGATCCATATTCTTCTCT 670
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 595 GAAAGATACCCTAAGATGAGCAAAGCTCTGCTAAATTCAGGAAGATCCATATTCTTCTCT 654
Query 671 CTGTGCGAATGGGGACAAGAGGATCCAGCAACTTGGGCAGGAGATATTGGCAACAGTTGG 730
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTGTGTGAATGGGGACAAGAGGATCCAGCAACTTGGGCAGGAGATATTGGCAACAGTTGG 714
Query 731 AGAACAACAGGAGATATCCAAGATAATTGGAAAAGCATGACATTGATAGCGGATCAGAAT 790
|||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |||
Sbjct 715 AGAACAACAGGAGACATCCAAGATAACTGGAAAAGCATGACCCTGATAGCAGATCAAAAT 774
Query 791 GATCGATGGGCATCTTATGCAAGACCAGGATCGTGGAACGATCCAGACATGCTTGAAGTG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GATCGATGGGCATCTTATGCAAGACCAGGATCGTGGAACGATCCAGACATGCTTGAAGTG 834
Query 851 GGAAATGGAGGCATGACTAAGGAAGAATACATGTCGCATTTCAGCATCTGGGCATTGGCA 910
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 835 GGAAATGGAGGGATGACTAAGGAAGAATACAGGTCGCATTTCAGCATCTGGGCATTGGCA 894
Query 911 AAAGCTCCTCTGCTGATCGGCTGCGATCTTAGATCGATGGACAAAGTTACATTTGAATTG 970
||||||||||||||||| || || |||||||||||||||||||| ||||| || || |||
Sbjct 895 AAAGCTCCTCTGCTGATAGGGTGTGATCTTAGATCGATGGACAATGTTACCTTCGAGTTG 954
Query 971 CTTAGCAACAAAGAGGTGATTGCTGTTAATCAAGACAAACTTGGGATCCAGGGAAAGAAA 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CTTAGCAACAAAGAGGTGATTGCTGTTAATCAAGACAAACTTGGGATCCAGGGAAAGAAA 1014
Query 1031 GTAAAGAAAGAAGGTGATCTTGAGGTATGGGCAGGTCCACTAAGCAAGAAACGAGTAGCG 1090
| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 ATCAAGAAAGATGGTGATCTTGAGGTATGGGCAGGTCCGCTAAGCAAGAAACGAGTAGCG 1074
Query 1091 GTCATCCTATGGAACAGAGGATCAGCATCTGC-AAACATCACAGCTCGATGGGCTGAGAT 1149
||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||
Sbjct 1075 GTCATCCTATGGAACAGAGGATCAGTATCTGCCAAA-ATCACAGCTCGATGGGCTGACAT 1133
Query 1150 TGGCCTCAATTCATCAGATATTGTTAATGCTCGTGACTTATGGGAGCATTCGACATATTC 1209
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1134 TGGCCTTAGTTCATCAGATATTGTTAATGCTCGTGACTTATGGGAGCATTCGACACATTC 1193
Query 1210 ATGTGTTAAAAAGCAGCTATCTGCCCTAGTGGAGCCTCATGCCTGCAAAATGTATACTCT 1269
| |||||||||| || || |||||| |||||||||||||||||||||||||||| |||||
Sbjct 1194 ACGTGTTAAAAATCAACTCTCTGCCTTAGTGGAGCCTCATGCCTGCAAAATGTACACTCT 1253
Query 1270 TACAAGACGCAAGGCATAAGATGCCAA-TCTGGTGCAGATAAAGTTATGGAAGTAAAACT 1328
|||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||
Sbjct 1254 TACAAGACGCAAGGCATAAGAT-CCTGCTCTAATGCAGCTAAAGTTATGGAAGTAAAACT 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5