BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08380.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487672 jgi|Araly1|487672|fgenesh2_kg.6__806__AT5G08380.1 2034 0.0
Ahg487670 jgi|Araly1|487670|fgenesh2_kg.6__804__AT5G08370.1 213 3e-54
> Ahg487672 jgi|Araly1|487672|fgenesh2_kg.6__806__AT5G08380.1
Length=1482
Score = 2034 bits (1101), Expect = 0.0
Identities = 1367/1487 (92%), Gaps = 51/1487 (3%)
Strand=Plus/Plus
Query 28 TTCTTCTACTACAAAGTACAAAG-CAGTGTTCGTCAACTA-TCTTCTTCTCACTCTGT-- 83
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 1 TTCTTCTACTACAAAGTACAAAGCCAGTGTTCGTCAAC-AGTCTTCTTCTCACTCTGTGA 59
Query 84 TT----TCGTTTAGAGAGATTTTGCAGAGATGTCGAG-AC--GAGCAATGGTGATAAAGA 136
|| | |||||||||| ||||||||||||| |||| || ||||||||||||||||||
Sbjct 60 TTAAGCTTGTTTAGAGAGGTTTTGCAGAGATGGCGAGAACTAGAGCAATGGTGATAAAGA 119
Query 137 TGCCAATACTTATGATACTGATTTCATCAATGGTGATGACGATGGTCGAGTCTTCGAGAT 196
|| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 120 TGTCAACACTTATGATACTGATTTCATTAATGGTGATGAATATGGTCGAGTCTTCGAGAT 179
Query 197 CAGTT---AA---TAATGGTCATGACGATTCTGAGATCTTACGAAGACACTTGCTCACTA 250
||||| || |||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 180 CAGTTAACAAGGTTAATAATGGTGACGATTCTGAGATCTTACGAAGACTCTTGCTCACTA 239
Query 251 ATGGCCTCGGAGTCACTCCTCCCATGGGGTGGAATAGCTGGAACCATTTTAGCTGCAACA 310
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 ATGGCCTCGGCGTCACTCCTCCCATGGGGTGGAATAGCTGGAACCATTTCAGCTGCAACA 299
Query 311 TAGATGAAAAAATGATCAAAGAAACTGCTGATGCTTTGGTTACCACTGGCCTCTCTAAGC 370
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 TAGATGAGAAAATGATCAAAGAAACTGCTGATGCTTTGGTTACTACTGGCCTCTCTAAGC 359
Query 371 TTGGCTACAACTATGTTAACATCGATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAGG 430
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 TTGGTTACAAATACGTTAACATCGATGATTGTTGGGCTGAAATTTCTCGTGACAGCAAGG 419
Query 431 GAAGTCTGGTGCCAAAGAAGTCAACTTTCCCTTCTGGAATTAAAGCGGTTGCGGATTATG 490
||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 420 GAAGTCTGGTGCCAAAGAAGTCAACTTTCCCTTCTGGTATTAAAGCGCTTGCTGATTATG 479
Query 491 TTCACAGTAAAGGCCTTAAGCTTGGGATTTACTCAGATGCCGGGTATTTCACTTGCAGTA 550
|||| || || ||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 480 TTCATAGCAAGGGCCTTAAGCTCGGGATTTACTCAGATGCCGGGTATTTTACCTGCAGCA 539
Query 551 AAACCATGCCAGGTTCTTTAGGCTACGAGGAGCATGATGCCAAGACATTTGCAGAATGGG 610
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 AAACCATGCCAGGTTCTTTAGGCTATGAGGAGCATGATGCCAAGACATTTGCAGAATGGG 599
Query 611 GAATTGATTACTTGAAGTATGACAACTGCAACAGCGATGGCTCTAAACCTACTGTCAGGT 670
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 600 GAATTGATTACTTGAAGTATGACAACTGCAACAACGATGGCTCTAAACCGACTGTCAGGT 659
Query 671 ATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCATTGTGTG 730
|||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 ATCCGGTGATGACCCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCACTGTGTG 719
Query 731 AATGGGGAGATATGCATCCAGCTCTATGGGGATCTCCAGTAGGCAACAGTTGGAGAACCA 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATGGGGAGATATGCATCCAGCTCTATGGGGATCTCCAGTAGGCAACAGTTGGAGAACCA 779
Query 791 CTAATGACATTAAAGATACTTGGCTTAGTATGATCTCAATAGCAGACATGAATGAAGTCT 850
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTAGTGACATCAAAGATACTTGGCTTAGTATGATCTCAATAGCAGACATGAATGAAGTCT 839
Query 851 ACGCTGAGCATGCAAGACCTGGTGGCTGGAACGACCCGGATATGCTTGAAGTGGGAAATG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACGCTGAGCATGCAAGACCTGGTGGCTGGAACGACCCGGATATGCTTGAAGTGGGAAATG 899
Query 911 GAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGGCTC 970
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGGAATGACGAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGGCTC 959
Query 971 CTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATGGAGATTGTCGCCA 1030
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 960 CTCTTCTACTTGGCTGTGACATAAGAAACATGACCAAGGAAACAGTGGAGATTGTCGCAA 1019
Query 1031 ACAAGGAAGTCATTGCTATTAATCAAGA---------T-C--------C-ACATGGTGTT 1071
||||||||||||| |||||||||||||| | | | ||| |||||
Sbjct 1020 ACAAGGAAGTCATAGCTATTAATCAAGAAAAGGAAAGTTCTTGTAGATCCACACGGTGT- 1078
Query 1072 CAGGCCAAGAAAGTTAGAATGGAAGGCGATCTCGAGGTTTGGGCAGGACCATTGTCAGGT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGGCCAAGAAAGTTAGAATGGAAGGCGATCTCGAGGTTTGGGCAGGACCATTGTCAGGT 1138
Query 1132 TACAGAGTAGCTTTGCTTCTATTGAACCGTGGACCATCGCGAACTTCGATTACTGCTCTT 1191
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1139 TACAGAGTAGCTTTGCTTCTGCTGAACCGTGGACCATCACGAACTTCGATTACTGCTCTC 1198
Query 1192 TGGGAGGATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAGCAC 1251
||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1199 TGGGATGATATTGAGATCCCTGCAAATAGCATTGTTGAAGCCAGAGATCTATGGCAGCAC 1258
Query 1252 CAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGT 1311
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGACATTGAAGCAAAAGTTTGTAGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGT 1318
Query 1312 AAGTTGTATGTTCTCAAAC---C-----TGTTGCCTGAAAATACATGTGTATAGAGAG-- 1361
||||||||| ||||||||| | |||||||| ||||||||| | ||||||
Sbjct 1319 AAGTTGTATATTCTCAAACAGTCAAACCTGTTGCCT-AAAATACATAA--AGAGAGAGTT 1375
Query 1362 AGTTAGTGTGGCTACGTCACGTTGTATTCTCCAGTTATTCTGTAAAAACAATAAGGGTTC 1421
| ||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||
Sbjct 1376 AATTAGTGTGGCTACGTTACGTTGTAATCTCCAATAATTCTGTAAAAACAATAAGGGTTC 1435
Query 1422 GTCTCAAATTAAATCTCCACAGATGTTCTCCAATAAATTGTTCGAAA 1468
|||||||||| |||||||||||| |||||||||||||||||| |||
Sbjct 1436 GTCTCAAATTGGATCTCCACAGATATTCTCCAATAAATTGTTCTAAA 1482
> Ahg487670 jgi|Araly1|487670|fgenesh2_kg.6__804__AT5G08370.1
Length=1438
Score = 213 bits (115), Expect = 3e-54
Identities = 651/897 (73%), Gaps = 88/897 (10%)
Strand=Plus/Plus
Query 266 CTCCTCCCATGGGGTGGAATAGCTGGAACCATTTT-AGCTGCAACAT-AGATGAAAAAAT 323
|||||| ||||| ||||| |||||||| |||||| || || ||||| | |||| | |
Sbjct 197 CTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG-TGTAACATCA-ATGAGACCCT 254
Query 324 GATCAAAGAAACTGCTGATGCTTTGGTTACCACTGGCCTCTCTAAGC--TTGGCTACAAC 381
|||||| |||| |||||||| ||||| | | ||| || ||| || | || |||||
Sbjct 255 CATCAAACAAACCGCTGATGCAATGGTTTCTAGTGGTCTTTCT--GCAATAGGTTACAAG 312
Query 382 TATGTTAACATCGATGATTGCTGGGCTGAAATTTCTCGTGACA-GC-AAGGGAAGTCTGG 439
||| | ||||| |||||||| |||| || || || | || | | |||| ||| |||
Sbjct 313 TATATCAACATAGATGATTGTTGGGGTG-AA-CTCAAGAGAGATTCTCAGGGGAGTTTGG 370
Query 440 -TGCCAAAGAAGTCAAC-TTTCCCTTCTGGAATTAAAGCGGTT-GCGGATTATGTTCACA 496
||| |||| | || || ||| ||||| ||||| || || || | ||||||||||| |
Sbjct 371 TTGCGAAAGCA-TCGACATTT-CCTTCAGGAATCAAGGC-TTTATCAGATTATGTTCATA 427
Query 497 GTAAAGGCCTTAAGCTTGGGATTTACTCAGATGCCGGGTA-T-TTCACTTGCAGTAAAAC 554
| ||||| || ||||||||||| ||||| ||||||||| | | || || ||||| ||||
Sbjct 428 GCAAAGGGCTAAAGCTTGGGATATACTCTGATGCCGGG-ACTCTT-ACCTGCAGCCAAAC 485
Query 555 CATGCCAGGTTC-TTTAGGCTACGAGGAGCATGATGCCAAGACATTTGCAGAATGGGGAA 613
|||||| || || | ||| | || || || |||||||| |||||||| |||||| |
Sbjct 486 CATGCCGGGCTCACTCGGGC-ATGAAGAACAAGATGCCAAAACATTTGCCTCATGGGGGA 544
Query 614 TTGATTACTTGAAGTATGACAACTGC-AACAGCGA-TGGCTCTAA-ACCTACTGTCAGGT 670
|||||||| |||||||||| |||||| || | | ||| | || || | | || |
Sbjct 545 TTGATTACCTGAAGTATGATAACTGCGAA-A-ATACTGGGAC-AAGTCCAAGAGAAAGAT 601
Query 671 ATCC-AGTGATGACTC-GAGCTCTGATGAAA-TCTGGCCGCCCCATCTTTC-ACTCAT-T 725
| || | ||||| | ||||||| | ||| || || | |||| ||| ||| | |
Sbjct 602 ACCCTA-AGATGA-GCAAAGCTCTGCT-AAATTCAGGAAGATCCAT-ATTCTTCTC-TCT 656
Query 726 GTGTGAATGGGGA-GATATGCATCCAGC-TCTATGGGGATCTCCAG-TA--GGCAACAGT 780
||||||||||||| | | | ||||||| || | ||| | || || |||||||||
Sbjct 657 GTGTGAATGGGGACAAGA-GGATCCAGCAACT-T-GGG--CAGGAGATATTGGCAACAGT 711
Query 781 TGGAGAACCACTA--ATGACATTAAAGAT-ACTTGGCTTAGTATGATCTC-AATAGCAGA 836
|||||||| || | | ||||| ||||| || ||| || |||| | | ||||||||
Sbjct 712 TGGAGAACAAC-AGGA-GACATCCAAGATAAC-TGGAAAAGCATGA-CCCTGATAGCAGA 767
Query 837 -CATGAATGAAGTCTACGCTG-AGC--ATGCAAGACCTGG-TGGCTGGAACGACCCGGAT 891
|| |||| | || | | | | | |||||||||| || | | |||||||| || ||
Sbjct 768 TCA-AAATG-A-TCGATG-GGCATCTTATGCAAGACCAGGATCG-TGGAACGATCCAGAC 822
Query 892 ATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTC-CATTTCAGCAT 950
||||||||||||||||||||||||||||| || || || |||| ||| |||||||||||
Sbjct 823 ATGCTTGAAGTGGGAAATGGAGGGATGACTAAGGAAGAATACAG-GTCGCATTTCAGCAT 881
Query 951 ATGGGCAATCTCAAAGGCTCCTCTTCT-ACTTGGTTGTGA-CATAAGAAAC-ATG-ACCA 1006
|||||| | |||| |||||||| || | | || ||||| | || || | ||| || |
Sbjct 882 CTGGGCATTGGCAAAAGCTCCTCTGCTGA-TAGGGTGTGATCTTA-GAT-CGATGGAC-A 937
Query 1007 AAGAAACAATGGAGATTG-TC-GCCAACAAGGAAGTCATTGCTATTAATCAAGATCCA-C 1063
| | || | ||| ||| | || ||||| || || |||||| |||||||||| | | |
Sbjct 938 ATGTTACCTTCGAG-TTGCTTAGC-AACAAAGAGGTGATTGCTGTTAATCAAGA-CAAAC 994
Query 1064 ATGGTGTTC-AGGCCAAGAAAGTTA-GAATGGAAGGCGATCTCGAGGTTTGGGCAGG 1118
||| | || ||| |||||| | | ||| | | || ||||| ||||| ||||||||
Sbjct 995 TTGG-GATCCAGGGAAAGAAAATCAAGAAAG-ATGGTGATCTTGAGGTATGGGCAGG 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5